Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.5e-214 749.2 371 100.0
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 1.1e-191 673.3 370 89.2
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 3.1e-191 671.8 370 89.5
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 7.6e-190 667.2 372 90.9
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 2.2e-189 665.6 372 90.3
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.1e-188 663.3 372 90.1
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-180 636.3 398 81.7
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 3.1e-175 618.6 383 83.3
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 3.8e-173 611.7 399 78.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.5e-169 599.0 371 83.0
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 4.5e-158 561.6 373 72.7
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 3.2e-156 555.4 369 73.2
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-155 553.5 356 78.9
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.6e-155 553.1 369 73.4
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 1.3e-154 550.1 369 71.8
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 1.8e-154 549.7 369 72.6
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 2.3e-154 549.3 369 72.6
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 3.9e-154 548.5 369 72.4
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 6.9e-151 537.7 369 70.2
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 9.0e-151 537.3 369 72.4
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-150 535.8 369 70.7
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.4e-150 535.4 369 70.7
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 4.5e-150 535.0 370 70.8
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.2e-149 532.7 372 71.8
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 2.9e-149 532.3 369 69.4
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 5.0e-149 531.6 369 69.1
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 6.5e-149 531.2 369 71.5
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.1e-148 530.4 369 71.3
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 4.2e-148 528.5 369 70.7
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 9.3e-148 527.3 369 69.4
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.2e-147 526.9 379 68.1
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.2e-147 526.9 369 69.1
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 3.5e-147 525.4 425 64.2
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 4.6e-147 525.0 369 69.1
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 7.9e-147 524.2 369 70.2
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 3.9e-146 521.9 363 71.3
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.7e-146 521.2 386 67.1
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 8.7e-146 520.8 371 69.3
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 1.1e-145 520.4 366 69.4
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.5e-145 520.0 369 69.1
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 1.9e-145 519.6 369 69.6
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 2.5e-145 519.2 363 69.7
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 3.3e-145 518.8 386 66.8
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 4.3e-145 518.5 370 69.7
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 5.7e-145 518.1 369 68.6
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 5.7e-145 518.1 369 69.1
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 5.7e-145 518.1 370 68.1
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 7.4e-145 517.7 369 69.4
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 9.7e-145 517.3 393 66.4
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 9.7e-145 517.3 371 69.3
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-144 516.5 386 66.6
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.1e-143 513.8 369 67.5
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 2.4e-143 512.7 370 69.2
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.1e-143 511.9 360 70.6
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 4.1e-143 511.9 360 70.6
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 5.3e-143 511.5 365 67.7
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 9.0e-143 510.8 368 67.4
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 9.0e-143 510.8 371 67.9
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.2e-142 510.4 368 67.4
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.2e-142 510.4 369 66.9
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 1.5e-142 510.0 369 66.4
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 2.0e-142 509.6 369 66.4
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 7.7e-142 507.7 368 66.8
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 7.7e-142 507.7 366 68.3
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 1.0e-141 507.3 368 66.8
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 1.3e-141 506.9 369 65.9
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 5.0e-141 505.0 367 66.8
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 6.5e-141 504.6 368 66.6
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 6.5e-141 504.6 368 66.6
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 8.5e-141 504.2 368 66.8
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 8.5e-141 504.2 369 67.2
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 1.1e-140 503.8 367 67.6
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 1.4e-140 503.4 368 66.8
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 2.5e-140 502.7 368 66.6
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 3.2e-140 502.3 368 66.8
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 2.7e-139 499.2 327 74.9
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 3.6e-139 498.8 357 69.5
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 4.6e-139 498.4 368 66.3
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 4.6e-139 498.4 366 67.2
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 6.1e-139 498.0 357 69.5
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 6.7e-138 494.6 357 68.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 1.5e-137 493.4 370 67.0
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 5.7e-137 491.5 374 67.4
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 1.1e-135 487.3 367 66.2
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 2.0e-134 483.0 368 63.9
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.9e-132 476.5 366 65.6
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 6.1e-131 471.5 369 64.5
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 1.0e-130 470.7 368 64.4
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.1e-129 467.2 326 70.2
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 3.3e-129 465.7 368 63.9
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.4e-129 465.3 373 64.1
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.4e-129 465.3 373 64.1
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 2.2e-128 463.0 369 62.3
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 2.2e-128 463.0 369 62.1
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 2.8e-128 462.6 369 63.4
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.2e-126 457.2 371 60.6
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 2.0e-126 456.4 327 69.1
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.7e-125 453.4 379 62.8
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 5.5e-124 448.4 298 75.5
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 6.1e-123 444.9 365 61.1
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 2.3e-122 443.0 363 61.2
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.1e-121 440.7 369 61.2
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.1e-121 440.7 386 60.1
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.4e-121 438.7 292 72.6
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 2.8e-120 436.0 296 72.3
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.3e-119 431.8 338 63.6
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 8.5e-117 424.5 301 68.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 5.5e-116 421.8 305 66.2
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 1.4e-114 417.2 298 70.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.0e-106 389.0 287 67.2
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 8.3e-104 381.3 369 54.7
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 1.9e-100 370.2 369 53.4
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.9e-100 370.2 369 54.2
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.1e-95 354.4 294 57.1
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 2.4e-95 353.2 369 48.0
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 1.9e-92 343.6 368 48.6
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 2.1e-91 340.1 325 52.9
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 1.4e-90 337.4 344 47.7
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.0e-90 335.9 369 50.4
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 5.8e-89 332.0 350 48.6
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.2e-86 324.3 373 49.6
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 2.0e-86 323.6 363 50.7
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 3.9e-85 319.3 306 56.5
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 4.8e-59 232.6 160 68.8
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.4e-58 231.1 336 39.0
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 4.6e-46 189.5 143 63.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 3.7e-43 179.9 378 31.2
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.4e-42 177.9 213 50.7
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 6.7e-37 159.1 126 63.5
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.0e-33 147.5 344 31.1
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.0e-32 145.2 148 53.4
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 1.0e-29 135.2 103 64.1
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 8.2e-27 125.6 116 56.0
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.9e-26 122.5 87 67.8
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 9.1e-26 122.1 143 46.9
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.6e-25 120.6 83 69.9
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.7e-25 119.0 85 64.7
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.7e-24 117.9 85 63.5
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-23 114.4 110 52.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 4.2e-23 113.2 90 64.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.8e-21 107.8 362 24.3
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.8e-21 107.8 110 50.9
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.3e-21 107.5 79 65.8
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.8e-21 105.5 78 65.4
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-20 105.1 78 65.4
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 78 65.4
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.1e-20 105.1 79 64.6
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.3e-20 103.6 78 64.1
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.3e-20 103.6 78 64.1
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.2e-19 100.9 79 63.3
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 1.8e-18 97.8 78 60.3
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.4e-18 97.4 70 67.1
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-18 97.1 79 60.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 4.1e-18 96.7 104 54.8
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 2.2e-16 90.9 101 49.5
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.6e-14 84.7 56 73.2
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.7e-14 84.0 60 66.7
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 1.8e-13 81.3 73 56.2
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 1.1e-12 78.6 45 80.0
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 1.3e-11 75.1 67 59.7
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 5.9e-09 66.2 52 59.6
Aa31LG5G23020 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.0e-08 63.2 48 66.7
Gohir.D09G037800 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.5e-08 62.8 43 72.1
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.9e-07 61.2 73 47.9
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 5.5e-07 59.7 43 67.4
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 1.2e-06 58.5 42 66.7
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 6.1e-06 56.2 42 61.9


User provided reference genes

Program Settings