Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 6.4e-32 140.2 74 100.0
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.8e-27 124.8 74 87.8
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 3.6e-27 124.4 74 86.5
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 3.1e-26 121.3 74 82.4
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.5e-25 119.0 74 85.1
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.3e-24 115.9 74 83.8
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 2.4e-23 111.7 75 78.7
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 7.1e-23 110.2 76 76.3
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 1.2e-22 109.4 74 78.4
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 2.1e-22 108.6 74 75.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 3.5e-22 107.8 73 75.3
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 4.6e-22 107.5 72 76.4
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 1.0e-21 106.3 74 75.7
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.0e-21 104.8 74 75.7
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 3.9e-21 104.4 72 75.0
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 5.1e-21 104.0 74 75.7
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 6.6e-21 103.6 74 71.6
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 8.7e-21 103.2 74 73.0
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.1e-20 102.8 74 71.6
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.1e-20 102.8 74 70.3
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 1.1e-20 102.8 71 76.1
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.5e-20 102.4 77 74.0
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 74 70.3
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 1.5e-20 102.4 73 75.3
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 1.5e-20 102.4 74 75.7
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 73.0
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 70.3
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 1.9e-20 102.1 74 70.3
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 1.9e-20 102.1 69 73.9
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.9e-20 102.1 73 75.3
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 2.5e-20 101.7 72 76.4
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 2.5e-20 101.7 70 77.1
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 2.5e-20 101.7 77 68.8
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 4.3e-20 100.9 72 73.6
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 4.3e-20 100.9 71 71.8
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.3e-20 100.9 60 81.7
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 4.3e-20 100.9 71 71.8
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 4.3e-20 100.9 70 71.4
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 4.3e-20 100.9 75 72.0
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 5.6e-20 100.5 72 72.2
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 5.6e-20 100.5 74 71.6
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 5.6e-20 100.5 72 72.2
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 5.6e-20 100.5 63 79.4
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 73.2
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 7.3e-20 100.1 71 71.8
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 9.6e-20 99.8 72 73.6
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.6e-20 99.8 74 70.3
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.3e-19 99.4 73 69.9
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 1.3e-19 99.4 70 70.0
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 1.6e-19 99.0 71 71.8
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 2.1e-19 98.6 73 72.6
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 2.1e-19 98.6 74 68.9
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 2.8e-19 98.2 66 74.2
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 2.8e-19 98.2 73 68.5
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 2.8e-19 98.2 65 73.8
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 2.8e-19 98.2 63 77.8
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 2.8e-19 98.2 72 69.4
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 3.6e-19 97.8 71 70.4
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.6e-19 97.8 74 67.6
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 3.6e-19 97.8 80 67.5
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 3.6e-19 97.8 72 69.4
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.6e-19 97.8 72 72.2
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 4.8e-19 97.4 65 73.8
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 4.8e-19 97.4 71 74.6
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 4.8e-19 97.4 74 70.3
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 6.2e-19 97.1 71 69.0
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 6.2e-19 97.1 60 78.3
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 6.2e-19 97.1 73 71.2
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 8.1e-19 96.7 70 68.6
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.1e-18 96.3 72 70.8
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.1e-18 96.3 69 72.5
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 1.1e-18 96.3 74 67.6
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 72.2
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 1.4e-18 95.9 72 70.8
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.8e-18 95.5 70 70.0
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 66.2
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.4e-18 95.1 71 67.6
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.4e-18 95.1 63 76.2
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 2.4e-18 95.1 73 71.2
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 3.1e-18 94.7 71 73.2
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 3.1e-18 94.7 60 78.3
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 3.1e-18 94.7 72 68.1
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.0e-18 94.4 68 73.5
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 4.0e-18 94.4 71 67.6
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 5.3e-18 94.0 73 67.1
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 6.9e-18 93.6 64 75.0
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 6.9e-18 93.6 64 75.0
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 9.0e-18 93.2 70 71.4
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 9.0e-18 93.2 69 71.0
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.2e-17 92.8 63 76.2
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.5e-17 92.4 73 68.5
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 2.0e-17 92.0 57 78.9
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 2.6e-17 91.7 71 71.8
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 2.6e-17 91.7 71 71.8
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 2.6e-17 91.7 59 76.3
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.6e-17 91.7 73 65.8
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 2.6e-17 91.7 57 78.9
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 2.6e-17 91.7 54 81.5
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 3.4e-17 91.3 57 80.7
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 3.4e-17 91.3 57 80.7
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 3.4e-17 91.3 71 70.4
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 5.8e-17 90.5 56 82.1
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.8e-17 90.5 71 70.4
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 7.6e-17 90.1 68 69.1
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 7.6e-17 90.1 57 80.7
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 7.6e-17 90.1 74 67.6
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 7.6e-17 90.1 56 83.9
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 9.9e-17 89.7 57 78.9
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 9.9e-17 89.7 57 78.9
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 9.9e-17 89.7 57 78.9
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 9.9e-17 89.7 57 78.9
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 9.9e-17 89.7 57 78.9
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 9.9e-17 89.7 56 78.6
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 9.9e-17 89.7 71 70.4
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 1.3e-16 89.4 69 71.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 1.3e-16 89.4 55 80.0
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 1.7e-16 89.0 69 69.6
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 2.2e-16 88.6 57 80.7
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 2.2e-16 88.6 61 70.5
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 2.2e-16 88.6 69 69.6
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 2.9e-16 88.2 56 78.6
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 3.8e-16 87.8 57 77.2
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 4.9e-16 87.4 57 75.4
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 6.4e-16 87.0 67 70.1
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 8.4e-16 86.7 64 68.8
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 8.4e-16 86.7 70 67.1
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 1.1e-15 86.3 75 65.3
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-15 86.3 75 65.3
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 1.1e-15 86.3 75 65.3
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 1.1e-15 86.3 67 71.6
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.9e-15 85.5 64 68.8
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 5.4e-15 84.0 65 66.2
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 5.4e-15 84.0 75 64.0
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 9.3e-15 83.2 75 64.0
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 7.9e-14 80.1 68 58.8
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 7.9e-14 80.1 67 65.7
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.3e-13 78.6 68 61.8
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 2.3e-13 78.6 68 61.8
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 5.1e-13 77.4 69 60.9
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 3.3e-12 74.7 60 61.7
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 5.6e-12 73.9 57 63.2
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 5.6e-12 73.9 61 65.6
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 5.6e-12 73.9 51 74.5
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 9.6e-12 73.2 71 52.1
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 9.6e-12 73.2 67 56.7
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 1.6e-11 72.4 56 67.9
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 2.8e-11 71.6 55 65.5
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 1.1e-10 69.7 39 87.2
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 1.4e-10 69.3 59 62.7
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.4e-10 68.6 56 62.5
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.4e-10 68.6 56 62.5
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 9.0e-10 66.6 70 45.7
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 1.2e-09 66.2 68 51.5
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 1.2e-09 66.2 61 55.7
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 9.3e-07 56.6 56 50.0
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 6.0e-06 53.9 34 79.4


User provided reference genes

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