Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 4.6e-129 464.5 231 100.0
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 2.2e-115 419.1 237 86.5
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 6.5e-115 417.5 237 86.1
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 6.5e-115 417.5 237 86.5
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.2e-104 381.3 231 80.1
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 5.7e-103 377.9 231 79.7
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 3.5e-100 368.6 219 83.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 1.4e-93 346.7 227 70.5
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 4.5e-92 341.7 225 70.7
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 1.7e-91 339.7 225 71.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 1.7e-91 339.7 225 71.1
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 5.0e-91 338.2 225 68.4
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.5e-91 337.8 225 71.6
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 8.5e-91 337.4 225 70.7
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 1.1e-90 337.0 231 69.7
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 1.1e-90 337.0 224 71.0
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 4.2e-90 335.1 231 67.5
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.7e-89 332.4 226 69.0
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 3.6e-89 332.0 231 65.8
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 68.4
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 68.0
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.0e-88 328.9 225 68.4
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 5.2e-88 328.2 219 69.4
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 5.2e-88 328.2 231 66.7
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 6.8e-88 327.8 223 67.3
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 6.8e-88 327.8 225 68.0
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.8e-88 327.4 225 68.4
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.8e-88 327.4 225 68.4
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.0e-87 326.2 225 67.6
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 2.0e-87 326.2 226 68.1
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 2.6e-87 325.9 231 64.9
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.6e-87 325.9 225 68.4
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.6e-87 325.9 225 67.1
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 3.4e-87 325.5 231 67.5
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 4.4e-87 325.1 225 70.7
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 5.7e-87 324.7 225 68.9
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 9.8e-87 323.9 224 68.8
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 9.8e-87 323.9 225 69.3
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 1.3e-86 323.6 223 69.5
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 1.7e-86 323.2 231 65.4
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 2.2e-86 322.8 226 66.4
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.2e-86 322.8 225 68.9
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 2.2e-86 322.8 225 67.1
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 2.8e-86 322.4 231 65.4
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 3.7e-86 322.0 230 66.1
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 8.3e-86 320.9 225 68.9
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 1.1e-85 320.5 231 66.7
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 1.4e-85 320.1 231 66.7
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 1.8e-85 319.7 224 69.2
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 1.8e-85 319.7 231 66.2
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 1.8e-85 319.7 225 67.1
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.8e-85 319.7 219 68.5
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 2.4e-85 319.3 231 64.1
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 3.1e-85 318.9 225 67.6
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 3.1e-85 318.9 225 68.0
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 4.1e-85 318.5 231 63.6
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 4.1e-85 318.5 225 66.7
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 5.4e-85 318.2 225 67.1
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 5.4e-85 318.2 230 64.8
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 7.0e-85 317.8 214 69.6
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.2e-84 317.0 218 70.6
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.2e-84 317.0 234 65.8
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.6e-84 316.6 224 67.4
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 2.0e-84 316.2 225 65.8
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.7e-84 315.8 223 65.0
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 2.7e-84 315.8 227 66.5
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 3.5e-84 315.5 230 63.9
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 3.5e-84 315.5 227 67.4
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 4.5e-84 315.1 224 66.1
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 4.5e-84 315.1 225 65.3
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 4.5e-84 315.1 249 61.8
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 2.9e-83 312.4 229 65.5
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 5.0e-83 311.6 231 64.9
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 8.6e-83 310.8 224 66.5
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 8.6e-83 310.8 224 63.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 1.1e-82 310.5 224 67.0
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.5e-82 310.1 223 66.4
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 1.9e-82 309.7 230 63.0
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 4.2e-82 308.5 228 65.8
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 7.2e-82 307.8 230 63.9
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 7.2e-82 307.8 230 63.9
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.2e-81 307.0 225 63.6
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 8.0e-81 304.3 225 64.9
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 8.0e-81 304.3 225 64.9
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.0e-80 303.9 225 66.2
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.0e-80 303.9 224 62.9
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 1.4e-80 303.5 226 65.0
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.3e-80 302.8 225 66.2
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 3.0e-80 302.4 229 64.2
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 8.9e-80 300.8 230 62.6
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 3.4e-79 298.9 220 65.5
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 7.5e-79 297.7 224 62.9
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.3e-78 297.0 228 62.7
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 1.3e-78 297.0 222 60.8
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 2.2e-78 296.2 224 63.4
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 2.2e-78 296.2 220 64.5
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 3.7e-78 295.4 222 64.4
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.1e-77 293.9 225 60.0
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 1.4e-77 293.5 225 64.4
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 7.0e-77 291.2 223 60.5
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.0e-76 289.7 231 61.0
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.7e-76 289.3 231 61.0
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 3.5e-76 288.9 226 63.3
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 3.5e-76 288.9 223 60.1
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 4.5e-76 288.5 226 62.8
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 3.8e-75 285.4 230 59.1
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.5e-74 283.5 229 58.5
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 2.5e-74 282.7 229 58.1
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.3e-74 282.3 229 58.5
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 5.6e-74 281.6 326 47.9
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 7.3e-74 281.2 231 60.2
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 4.7e-73 278.5 316 47.2
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 6.1e-73 278.1 229 58.1
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 3.4e-71 272.3 231 58.9
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 7.5e-71 271.2 228 55.3
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 3.7e-70 268.9 220 58.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 8.3e-70 267.7 224 55.4
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 1.1e-69 267.3 229 56.3
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 3.5e-68 262.3 357 42.0
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 4.6e-68 261.9 226 54.0
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 1.7e-67 260.0 224 54.0
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.4e-63 245.7 184 64.1
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 4.4e-63 245.4 153 73.9
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.1e-61 240.7 228 52.6
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 1.3e-59 233.8 153 70.6
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 3.6e-57 225.7 152 69.7
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 1.4e-53 213.8 179 57.0
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 2.4e-53 213.0 152 66.4
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 1.6e-52 210.3 148 69.6
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 2.3e-51 206.5 171 58.5
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 3.9e-51 205.7 130 76.2
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.4e-47 192.6 125 70.4
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 1.7e-46 190.3 193 53.4
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 7.1e-45 184.9 224 45.5
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 2.3e-43 179.9 107 75.7
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 3.3e-42 176.0 111 74.8
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 3.3e-42 176.0 111 74.8
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 4.7e-41 172.2 101 76.2
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 6.4e-38 161.8 118 64.4
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 5.4e-37 158.7 95 74.7
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 7.8e-36 154.8 125 56.8
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 7.3e-34 148.3 118 58.5
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 7.3e-34 148.3 191 37.7
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.8e-32 143.7 119 62.2
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 9.0e-32 141.4 117 58.1
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.3e-27 126.7 81 69.1
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 2.8e-25 119.8 106 55.7
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 1.6e-20 104.0 81 60.5
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 4.6e-20 102.4 128 45.3
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 3.8e-14 82.8 57 66.7
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.9e-13 80.5 86 50.0
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 4.3e-10 69.3 61 50.8


User provided reference genes

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