Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 4.5e-228 794.3 405 100.0
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 2.8e-206 721.8 403 89.8
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 2.6e-204 715.3 403 89.6
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 1.4e-202 709.5 403 89.1
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 3.3e-191 671.8 412 83.7
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 3.7e-190 668.3 406 82.5
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 7.0e-189 664.1 406 82.3
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.6e-153 545.4 394 71.8
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 9.2e-149 530.8 397 69.8
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 2.1e-148 529.6 394 70.8
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 4.3e-146 521.9 413 66.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 5.6e-146 521.5 398 68.6
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 6.2e-145 518.1 396 69.2
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 2.4e-141 506.1 392 67.6
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 1.7e-139 500.0 407 64.4
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 1.5e-138 496.9 400 65.8
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 1.2e-137 493.8 407 63.9
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 5.8e-135 485.0 393 64.4
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 1.3e-134 483.8 406 63.3
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 1.4e-133 480.3 402 63.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 7.8e-132 474.6 399 64.7
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 1.3e-131 473.8 399 61.9
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 2.3e-131 473.0 399 63.9
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 1.5e-130 470.3 401 62.8
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.5e-130 469.5 400 62.0
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.5e-130 469.5 387 63.6
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 7.3e-130 468.0 410 61.0
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.1e-128 462.6 398 61.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 1.2e-127 460.7 395 62.5
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 2.0e-127 459.9 389 61.4
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 2.9e-126 456.1 406 60.3
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 4.9e-126 455.3 400 59.2
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 1.1e-125 454.1 396 61.4
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 1.1e-125 454.1 390 61.0
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.4e-125 453.8 392 61.5
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.9e-125 453.4 392 61.5
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.2e-125 452.2 392 60.5
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 9.3e-125 451.1 394 61.2
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 1.2e-124 450.7 420 57.1
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 2.1e-124 449.9 380 64.7
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.7e-124 449.5 399 58.6
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 2.7e-124 449.5 398 59.5
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 3.5e-124 449.1 468 55.1
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 4.6e-124 448.7 391 61.4
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 1.3e-123 447.2 393 61.1
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 3.0e-123 446.0 396 58.8
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 5.1e-123 445.3 405 60.7
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 5.6e-122 441.8 396 60.9
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 7.4e-122 441.4 391 60.4
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 1.4e-120 437.2 393 58.5
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 1.8e-120 436.8 398 57.5
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 2.4e-120 436.4 443 56.4
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 5.3e-120 435.3 399 58.9
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 6.9e-120 434.9 402 59.2
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 9.0e-120 434.5 392 57.7
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 1.2e-119 434.1 396 59.3
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 1.2e-119 434.1 394 57.6
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 2.0e-119 433.3 393 58.5
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 3.4e-119 432.6 415 57.8
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.5e-119 432.2 404 58.7
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 7.6e-119 431.4 394 58.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 1.3e-118 430.6 390 57.9
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.2e-117 426.0 400 58.2
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 4.2e-117 425.6 394 58.9
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 5.5e-117 425.2 411 57.9
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.1e-117 424.9 411 57.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.7e-116 422.9 415 56.4
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.0e-115 421.0 409 57.7
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 1.3e-115 420.6 398 58.0
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 1.8e-115 420.2 391 57.8
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.3e-115 419.9 432 53.5
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 2.3e-115 419.9 392 57.7
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 3.9e-115 419.1 394 60.2
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 6.7e-115 418.3 409 57.5
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 8.7e-115 417.9 392 57.9
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.5e-114 416.4 399 57.9
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.4e-114 414.8 411 57.2
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.4e-114 414.8 411 57.2
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 1.6e-113 413.7 390 56.9
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 4.8e-113 412.1 418 55.3
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 8.2e-113 411.4 393 57.8
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.6e-111 404.8 398 57.3
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 1.7e-110 403.7 367 60.5
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 1.9e-109 400.2 391 57.8
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.1e-108 396.7 404 55.7
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.6e-108 395.6 395 55.9
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 4.6e-108 395.6 393 56.0
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 7.9e-108 394.8 397 56.2
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.0e-107 394.4 382 56.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 6.7e-107 391.7 392 56.1
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 1.9e-106 390.2 393 55.5
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 4.3e-106 389.0 395 55.7
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 3.1e-104 382.9 295 67.1
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 1.0e-102 377.9 414 51.0
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 2.9e-102 376.3 381 55.9
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 3.8e-102 375.9 381 55.1
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 6.5e-102 375.2 394 54.1
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 8.5e-102 374.8 381 54.6
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.2e-101 372.9 395 53.9
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 3.9e-99 365.9 414 51.9
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 3.9e-99 365.9 414 48.8
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.1e-96 356.3 312 62.2
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 6.9e-96 355.1 393 52.2
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 1.2e-95 354.4 470 47.4
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 3.7e-89 332.8 274 60.2
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 7.7e-87 325.1 268 61.2
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.6e-84 317.4 462 43.3
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 2.1e-84 317.0 390 48.7
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 3.6e-84 316.2 242 69.0
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 3.3e-82 309.7 302 57.6
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 2.8e-81 306.6 381 47.0
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 1.8e-80 303.9 400 43.8
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 1.7e-78 297.4 400 48.5
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-74 283.5 408 45.1
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 4.4e-74 282.7 415 41.2
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 3.7e-73 279.6 404 44.3
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 6.8e-67 258.8 364 43.4
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.0e-63 247.3 447 36.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 1.0e-62 245.0 410 38.8
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.8e-62 243.0 213 61.0
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 9.5e-61 238.4 465 35.9
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 1.8e-56 224.2 183 62.3
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 4.1e-56 223.0 260 46.2
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 4.3e-53 213.0 191 56.0
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 2.8e-52 210.3 294 45.9
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 2.9e-49 200.3 189 59.8
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.0e-38 165.2 178 50.6
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.9e-37 161.0 177 49.2
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 5.6e-37 159.5 157 54.1
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 2.6e-34 150.6 118 64.4
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.4e-32 144.1 175 52.0
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 1.1e-29 135.2 265 35.1
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 1.2e-26 125.2 89 65.2
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-24 118.6 182 46.7
Zm00001eb338840 Zea mays HOM05D004986 ORTHO05D005898 1.3e-17 95.1 65 69.2
Zm00001eb355160 Zea mays HOM05D004986 ORTHO05D005898 1.7e-17 94.7 89 55.1
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 2.2e-17 94.4 161 34.8
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 8.4e-17 92.4 108 49.1
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 9.6e-13 79.0 90 46.7
CARHR281800 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.3e-12 78.6 50 74.0
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 2.4e-11 74.3 111 44.1
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 2.4e-11 74.3 111 44.1
arahy.Tifrunner.gnm1.ann1.06FJIN Arachis hypogaea HOM05D004986 ORTHO05D005898 4.0e-11 73.6 63 65.1
arahy.Tifrunner.gnm1.ann1.757MF4 Arachis hypogaea HOM05D004986 ORTHO05D005898 4.0e-11 73.6 63 65.1
CDE04G2304 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 2.6e-10 70.9 157 38.9


User provided reference genes

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