Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G647.22 Capsicum annuum HOM05D012045 ORTHO05D012344 5.1e-45 184.5 127 100.0
CAN.G189.68 Capsicum annuum HOM05D000021 ORTHO05D000010 6.3e-19 97.8 82 61.0
CAN.G783.16 Capsicum annuum HOM05D000021 ORTHO05D000010 1.7e-16 89.7 95 54.7
Peaxi162Scf00538g00130 Petunia axillaris HOM05D012045 ORTHO05D012344 5.0e-16 88.2 86 60.5
CAN.G647.32 Capsicum annuum HOM05D000021 ORTHO05D000010 7.2e-15 84.3 52 75.0
CAN.G189.5 Capsicum annuum HOM05D000021 ORTHO05D000010 2.7e-14 82.4 52 75.0
CAN.G404.23 Capsicum annuum HOM05D000021 ORTHO05D000010 7.9e-14 80.9 52 75.0
CAN.G189.25 Capsicum annuum HOM05D000021 ORTHO05D000010 1.4e-13 80.1 52 75.0
CAN.G783.27 Capsicum annuum HOM05D000021 ORTHO05D000010 6.7e-13 77.8 52 73.1
CAN.G801.22 Capsicum annuum HOM05D000021 ORTHO05D000010 1.9e-12 76.3 74 55.4
CAN.G404.29 Capsicum annuum HOM05D000021 ORTHO05D000010 5.7e-12 74.7 83 56.6
CAN.G866.8 Capsicum annuum HOM05D000002 ORTHO05D000010 7.4e-12 74.3 89 47.2
CAN.G189.3 Capsicum annuum HOM05D000021 ORTHO05D000010 1.7e-11 73.2 79 50.6
CAN.G1286.21 Capsicum annuum HOM05D000021 ORTHO05D012344 3.7e-11 72.0 46 71.7
CAN.G647.12 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-10 70.5 80 47.5
Peaxi162Scf00734g00034 Petunia axillaris HOM05D000021 ORTHO05D000010 1.1e-10 70.5 95 42.1
CAN.G866.20 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-10 69.7 86 46.5
CAN.G647.17 Capsicum annuum HOM05D000021 ORTHO05D000010 2.4e-10 69.3 80 47.5
Nitab4.5_0004221g0060 Nicotiana tabacum HOM05D000021 ORTHO05D012344 2.4e-10 69.3 83 47.0
RcHm_v2.0_Chr5g0011691 Rosa chinensis HOM05D000021 ORTHO05D000010 4.1e-10 68.6 76 48.7
CAN.G647.34 Capsicum annuum HOM05D000021 ORTHO05D000010 5.3e-10 68.2 46 69.6
Hund11275 Selenicereus undatus HOM05D000021 ORTHO05D000010 5.3e-10 68.2 61 55.7
CAN.G404.22 Capsicum annuum HOM05D000021 ORTHO05D000010 1.2e-09 67.0 83 44.6
MD07G1236500 Malus domestica HOM05D000021 ORTHO05D000010 1.2e-09 67.0 77 45.5
Cc11_g02170 Coffea canephora HOM05D000021 ORTHO05D000010 2.6e-09 65.9 63 54.0
PGSC0003DMG400026749 Solanum tuberosum HOM05D000021 ORTHO05D000010 4.5e-09 65.1 46 67.4
MD07G1236800 Malus domestica HOM05D000021 ORTHO05D000010 5.9e-09 64.7 77 44.2
Cpa.g.sc29.186 Carica papaya HOM05D020225 ORTHO05D011302 7.7e-09 64.3 82 47.6
Cc11_g02200 Coffea canephora HOM05D000021 ORTHO05D000010 7.7e-09 64.3 95 43.2
Solyc03g006080.4 Solanum lycopersicum HOM05D000021 ORTHO05D000010 7.7e-09 64.3 46 65.2
CAN.G866.13 Capsicum annuum HOM05D000021 ORTHO05D000010 1.0e-08 63.9 36 77.8
CAN.G866.22 Capsicum annuum HOM05D000021 ORTHO05D000010 1.0e-08 63.9 36 77.8
Cc10_g10450 Coffea canephora HOM05D000021 ORTHO05D000010 1.7e-08 63.2 90 40.0
Cc11_g07850 Coffea canephora HOM05D000021 ORTHO05D000010 1.7e-08 63.2 60 50.0
RcHm_v2.0_Chr2g0113671 Rosa chinensis HOM05D000021 ORTHO05D000010 2.2e-08 62.8 92 40.2
Cpa.g.sc7.107 Carica papaya HOM05D000021 ORTHO05D000010 2.9e-08 62.4 69 49.3
RcHm_v2.0_Chr2g0113871 Rosa chinensis HOM05D000021 ORTHO05D000010 2.9e-08 62.4 81 42.0
SalBow7G1704 Salvia bowleyana HOM05D000021 ORTHO05D000010 2.9e-08 62.4 69 47.8
CAN.G189.1 Capsicum annuum HOM05D000021 ORTHO05D000010 3.8e-08 62.0 140 30.7
Cc11_g02130 Coffea canephora HOM05D000021 ORTHO05D000010 6.5e-08 61.2 47 57.4
Hund20882 Selenicereus undatus HOM05D000021 ORTHO05D000010 6.5e-08 61.2 56 53.6
CAN.G638.12 Capsicum annuum HOM05D000021 ORTHO05D000010 8.5e-08 60.8 36 77.8
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.1e-07 60.5 82 47.6
MD05G1298300 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-07 60.5 77 42.9
RcHm_v2.0_Chr2g0113631 Rosa chinensis HOM05D000021 ORTHO05D000010 1.1e-07 60.5 77 42.9
COL.COLO4_27016 Corchorus olitorius HOM05D000021 ORTHO05D000010 1.4e-07 60.1 79 43.0
Gohir.A01G049266 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.4e-07 60.1 82 46.3
Peaxi162Scf00302g00017 Petunia axillaris HOM05D000021 ORTHO05D012344 1.4e-07 60.1 49 59.2
TWI38G0320 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.4e-07 60.1 65 53.8
Nitab4.5_0001265g0100 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.9e-07 59.7 82 46.3
RcHm_v2.0_Chr5g0040411 Rosa chinensis HOM05D012045 ORTHO05D012344 1.9e-07 59.7 76 42.1
Cc00_g24410 Coffea canephora HOM05D000021 ORTHO05D000010 2.5e-07 59.3 61 54.1
Cc00_g26720 Coffea canephora HOM05D000021 ORTHO05D000010 2.5e-07 59.3 89 41.6
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 3.2e-07 58.9 82 46.3
RcHm_v2.0_Chr7g0213311 Rosa chinensis HOM05D018904 ORTHO05D016947 3.2e-07 58.9 76 42.1
Hund20897 Selenicereus undatus HOM05D000021 ORTHO05D000010 3.2e-07 58.9 56 55.4
Hund25073 Selenicereus undatus HOM05D000021 ORTHO05D000010 3.2e-07 58.9 56 55.4
CiPaw.10G105000 Carya illinoinensis HOM05D000021 ORTHO05D000010 4.2e-07 58.5 91 38.5
MD07G1035900 Malus domestica HOM05D000021 ORTHO05D000010 4.2e-07 58.5 78 41.0
Oeu057329.1 Olea europaea HOM05D000021 ORTHO05D000010 4.2e-07 58.5 77 42.9
Aa31LG4G14500 Aethionema arabicum HOM05D000021 ORTHO05D000010 5.5e-07 58.2 77 44.2
Lj4C562G4 Lonicera japonica HOM05D000021 ORTHO05D000010 5.5e-07 58.2 79 43.0
SalBow7G3226 Salvia bowleyana HOM05D000021 ORTHO05D000010 5.5e-07 58.2 67 46.3
Duzib114G0384 Durio zibethinus HOM05D000021 ORTHO05D000010 7.2e-07 57.8 81 46.9
Lj7C151G1 Lonicera japonica HOM05D000021 ORTHO05D016971 7.2e-07 57.8 79 43.0
QL09p011978 Quercus lobata HOM05D000071 ORTHO05D000029 7.2e-07 57.8 83 41.0
Haze_19486 Corylus avellana HOM05D000021 ORTHO05D012344 9.4e-07 57.4 69 47.8
Duzib106G1130 Durio zibethinus HOM05D000021 ORTHO05D000010 9.4e-07 57.4 56 48.2
Lj4P526T16 Lonicera japonica HOM05D012045 ORTHO05D012344 9.4e-07 57.4 82 46.3
RcHm_v2.0_Chr2g0114381 Rosa chinensis HOM05D000021 ORTHO05D000010 9.4e-07 57.4 77 40.3
Cc09_g05670 Coffea canephora HOM05D000021 ORTHO05D000010 1.2e-06 57.0 78 42.3
Hund20846 Selenicereus undatus HOM05D000021 ORTHO05D000010 1.6e-06 56.6 50 52.0
CAN.G647.6 Capsicum annuum HOM05D000021 ORTHO05D000010 2.1e-06 56.2 30 76.7
MD07G1236200 Malus domestica HOM05D000021 ORTHO05D000010 2.1e-06 56.2 77 44.2
TWI14G1242 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 2.1e-06 56.2 89 40.4
MD07G1235700 Malus domestica HOM05D000021 ORTHO05D000010 2.7e-06 55.8 77 42.9
HanXRQChr15g0480491 Helianthus annuus HOM05D000021 ORTHO05D000010 3.6e-06 55.5 93 40.9
Lj4A539T58 Lonicera japonica HOM05D012045 ORTHO05D012344 3.6e-06 55.5 77 48.1
Oeu038752.1 Olea europaea HOM05D000021 ORTHO05D000010 3.6e-06 55.5 63 46.0
RcHm_v2.0_Chr2g0113771 Rosa chinensis HOM05D000021 ORTHO05D000010 3.6e-06 55.5 77 40.3
RcHm_v2.0_Chr5g0011141 Rosa chinensis HOM05D000021 ORTHO05D000010 3.6e-06 55.5 81 39.5
CAN.G638.9 Capsicum annuum HOM05D000021 ORTHO05D000010 4.7e-06 55.1 58 48.3
Manes.03G071700 Manihot esculenta HOM05D000071 ORTHO05D000029 4.7e-06 55.1 82 39.0
RcHm_v2.0_Chr5g0011351 Rosa chinensis HOM05D000021 ORTHO05D000010 4.7e-06 55.1 63 49.2
TAR633G0185 Trochodendron aralioides HOM05D000029 ORTHO05D008567 4.7e-06 55.1 80 41.2
RcHm_v2.0_Chr5g0059161 Rosa chinensis HOM05D000021 ORTHO05D000010 6.1e-06 54.7 58 50.0
MD11G1180300 Malus domestica HOM05D000021 ORTHO05D000010 7.9e-06 54.3 77 40.3
Nitab4.5_0002177g0170 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.9e-06 54.3 52 55.8


User provided reference genes

Program Settings