Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G647.18 Capsicum annuum HOM05D000055 ORTHO05D016183 1.5e-40 169.1 84 100.0
CAN.G1286.9 Capsicum annuum HOM05D000055 ORTHO05D000057 5.0e-33 144.1 83 84.3
CAN.G801.35 Capsicum annuum HOM05D000055 ORTHO05D016183 2.8e-31 138.3 83 81.9
CAN.G785.13 Capsicum annuum HOM05D000055 ORTHO05D000057 2.0e-29 132.1 79 81.0
Peaxi162Scf00734g00210 Petunia axillaris HOM05D000055 ORTHO05D000057 8.6e-25 116.7 83 72.3
PGSC0003DMG400026743 Solanum tuberosum HOM05D000055 ORTHO05D000057 1.1e-24 116.3 85 75.3
Solyc03g006110.3 Solanum lycopersicum HOM05D000055 ORTHO05D000057 1.2e-23 112.8 85 72.9
Sopen03g002120 Solanum pennellii HOM05D000055 ORTHO05D000057 3.6e-23 111.3 85 71.8
Nitab4.5_0002177g0120 Nicotiana tabacum HOM05D000055 ORTHO05D016183 2.6e-21 105.1 83 67.5
Nitab4.5_0003843g0040 Nicotiana tabacum HOM05D000055 ORTHO05D016183 2.6e-21 105.1 80 68.8
CAN.G801.26 Capsicum annuum HOM05D000055 ORTHO05D016183 3.7e-20 101.3 66 80.3
PGSC0003DMG400028479 Solanum tuberosum HOM05D000055 ORTHO05D000057 1.1e-16 89.7 85 58.8
Peaxi162Scf00162g00092 Petunia axillaris HOM05D000055 ORTHO05D000057 1.5e-16 89.4 89 58.4
Solyc02g072540.3 Solanum lycopersicum HOM05D000055 ORTHO05D000057 5.6e-16 87.4 85 56.5
Sopen02g021510 Solanum pennellii HOM05D000055 ORTHO05D000057 5.6e-16 87.4 85 57.6
Nitab4.5_0000462g0210 Nicotiana tabacum HOM05D000055 ORTHO05D000057 2.1e-15 85.5 63 73.0
CAN.G1286.24 Capsicum annuum HOM05D000055 ORTHO05D016183 6.2e-15 84.0 49 85.7
Nitab4.5_0005171g0010 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.1e-14 83.2 82 58.5
Nitab4.5_0013015g0010 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.1e-14 83.2 82 58.5
MSTRG.14738 Avicennia marina HOM05D000055 ORTHO05D000057 5.2e-14 80.9 82 57.3
Rhsim13G0189300 Rhododendron simsii HOM05D000055 ORTHO05D000057 3.4e-13 78.2 89 48.3
CAN.G411.92 Capsicum annuum HOM05D000055 ORTHO05D000057 5.8e-13 77.4 87 54.0
Migut.H01439 Erythranthe guttata HOM05D000055 ORTHO05D000057 5.8e-13 77.4 82 54.9
Cc02_g15160 Coffea canephora HOM05D000055 ORTHO05D000057 2.2e-12 75.5 90 53.3
Actinidia16787 Actinidia chinensis HOM05D000055 ORTHO05D000057 3.8e-12 74.7 87 49.4
CSS0023683 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 1.6e-10 69.3 86 46.5
MD10G1278400 Malus domestica HOM05D000055 ORTHO05D000057 2.1e-10 68.9 84 46.4
TAR626G0233 Trochodendron aralioides HOM05D000055 ORTHO05D000057 2.1e-10 68.9 77 48.1
Oeu039905.1 Olea europaea HOM05D000055 ORTHO05D000057 2.7e-10 68.6 79 49.4
COL.COLO4_31271 Corchorus olitorius HOM05D000055 ORTHO05D000057 4.6e-10 67.8 84 48.8
Dinv16790 Davidia involucrata HOM05D000055 ORTHO05D000057 6.0e-10 67.4 91 48.4
Sc05g0007050 Simmondsia chinensis HOM05D000055 ORTHO05D000057 6.0e-10 67.4 85 43.5
AUR62027696 Chenopodium quinoa HOM05D000055 ORTHO05D000057 1.0e-09 66.6 91 45.1
Thecc.06G168600 Theobroma cacao HOM05D000055 ORTHO05D000057 1.0e-09 66.6 86 46.5
FAN21G2975 Fragaria x ananassa HOM05D000055 ORTHO05D000057 1.3e-09 66.2 87 47.1
Potri.011G067500 Populus trichocarpa HOM05D000055 ORTHO05D000057 1.3e-09 66.2 84 44.0
TWI38G0267 Tripterygium wilfordii HOM05D000055 ORTHO05D000057 1.3e-09 66.2 85 40.0
Aqoxy4G00299 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 2.3e-09 65.5 83 48.2
Eucgr.E02758 Eucalyptus grandis HOM05D000055 ORTHO05D000057 3.9e-09 64.7 87 43.7
FvH4_3g07630 Fragaria vesca HOM05D000055 ORTHO05D000057 3.9e-09 64.7 87 46.0
FAN11G0353 Fragaria x ananassa HOM05D000055 ORTHO05D000057 3.9e-09 64.7 89 48.3
FAN25G1654 Fragaria x ananassa HOM05D000055 ORTHO05D000057 3.9e-09 64.7 87 46.0
AUR62031224 Chenopodium quinoa HOM05D000055 ORTHO05D000057 5.1e-09 64.3 91 39.6
Sabra11G0048800 Salix brachista HOM05D000055 ORTHO05D000057 5.1e-09 64.3 86 44.2
Sabra11G0050600 Salix brachista HOM05D000055 ORTHO05D000057 5.1e-09 64.3 86 44.2
MD05G1298900 Malus domestica HOM05D000055 ORTHO05D000057 6.6e-09 63.9 87 46.0
Gohir.A09G074500 Gossypium hirsutum HOM05D000055 ORTHO05D000057 8.7e-09 63.5 90 42.2
FAN16G0540 Fragaria x ananassa HOM05D000055 ORTHO05D000057 1.5e-08 62.8 87 44.8
Prupe.4G062900 Prunus persica HOM05D000055 ORTHO05D000057 1.9e-08 62.4 89 44.9
Gohir.D09G074300 Gossypium hirsutum HOM05D000055 ORTHO05D000057 2.5e-08 62.0 90 41.1
Gorai.006G089200 Gossypium raimondii HOM05D000055 ORTHO05D000057 2.5e-08 62.0 90 41.1
Gohir.D06G207300 Gossypium hirsutum HOM05D000055 ORTHO05D000057 3.3e-08 61.6 97 39.2
Gorai.010G159800 Gossypium raimondii HOM05D000055 ORTHO05D000057 3.3e-08 61.6 83 43.4
Gorai.010G241700 Gossypium raimondii HOM05D000055 ORTHO05D000057 3.3e-08 61.6 97 39.2
SEGI_07185 Sequoiadendron giganteum HOM05D000055 ORTHO05D000057 3.3e-08 61.6 83 42.2
GSVIVG01021231001 Vitis vinifera HOM05D000055 ORTHO05D000057 3.3e-08 61.6 83 43.4
TAR624G0373 Trochodendron aralioides HOM05D000055 ORTHO05D000057 4.3e-08 61.2 83 42.2
Ca_00448_v3 Cicer arietinum L. HOM05D000055 ORTHO05D000057 5.6e-08 60.8 91 39.6
RcHm_v2.0_Chr5g0011061 Rosa chinensis HOM05D000055 ORTHO05D000057 5.6e-08 60.8 85 44.7
CiPaw.10G060300 Carya illinoinensis HOM05D000055 ORTHO05D000057 9.6e-08 60.1 81 44.4
Gohir.A06G200000 Gossypium hirsutum HOM05D000055 ORTHO05D000057 9.6e-08 60.1 97 39.2
Atru.chr10.1646 Acer truncatum HOM05D000055 ORTHO05D000057 1.6e-07 59.3 91 39.6
BcaC06g31513 Brassica carinata HOM05D000055 ORTHO05D000057 1.6e-07 59.3 88 40.9
Nitab4.5_0002177g0130 Nicotiana tabacum HOM05D000055 ORTHO05D016183 1.6e-07 59.3 44 72.7
Duzib160G0306 Durio zibethinus HOM05D000055 ORTHO05D000057 2.1e-07 58.9 83 39.8
Potri.004G058300 Populus trichocarpa HOM05D000055 ORTHO05D000057 2.1e-07 58.9 84 44.0
Sabra04G0037900 Salix brachista HOM05D000055 ORTHO05D000057 2.1e-07 58.9 84 44.0
ATR0012G010 Amborella trichopoda HOM05D000055 ORTHO05D000057 2.8e-07 58.5 84 42.9
Aqoxy1G02024 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 2.8e-07 58.5 83 39.8
Cpa.g.sc7.84 Carica papaya HOM05D000055 ORTHO05D000057 2.8e-07 58.5 86 44.2
TPR.G27342 Trifolium pratense HOM05D000055 ORTHO05D000057 2.8e-07 58.5 89 39.3
Lj6g0013591 Lotus japonicus HOM05D000055 ORTHO05D000057 3.6e-07 58.2 85 44.7
Gohir.A05G154300 Gossypium hirsutum HOM05D000055 ORTHO05D000057 4.7e-07 57.8 85 45.9
ATR0012G067 Amborella trichopoda HOM05D000055 ORTHO05D000057 6.2e-07 57.4 84 42.9
ATR0681G098 Amborella trichopoda HOM05D000055 ORTHO05D000057 8.1e-07 57.0 85 37.6
CARHR176160 Cardamine hirsuta HOM05D000055 ORTHO05D000057 8.1e-07 57.0 90 43.3
DCAR_027990 Daucus carota HOM05D000055 ORTHO05D000057 8.1e-07 57.0 85 41.2
Sabra11G0050700 Salix brachista HOM05D000055 ORTHO05D000057 8.1e-07 57.0 84 42.9
EL10Ac8g20584 Beta vulgaris HOM05D000055 ORTHO05D000057 1.1e-06 56.6 91 39.6
CsaV3_1G033260 Cucumis sativus L. HOM05D000055 ORTHO05D000057 1.1e-06 56.6 94 39.4
Dinv40695 Davidia involucrata HOM05D000055 ORTHO05D000057 1.1e-06 56.6 78 42.3
Nitab4.5_0000206g0070 Nicotiana tabacum HOM05D000055 ORTHO05D000057 1.1e-06 56.6 83 41.0
TAR627G0571 Trochodendron aralioides HOM05D000055 ORTHO05D000057 1.1e-06 56.6 82 43.9
A06p46340 Brassica napus HOM05D000055 ORTHO05D000057 1.4e-06 56.2 88 39.8
Sed0019255 Sechium edule HOM05D000055 ORTHO05D000057 1.4e-06 56.2 85 41.2
BraA06t27497Z Brassica rapa HOM05D000055 ORTHO05D000057 1.8e-06 55.8 88 39.8
Lalb_Chr07g0186411 Lupinus albus HOM05D000055 ORTHO05D000057 1.8e-06 55.8 85 41.2
Sabra11G0048900 Salix brachista HOM05D000055 ORTHO05D000057 1.8e-06 55.8 84 41.7
THA.LOC104806158 Tarenaya hassleriana HOM05D000055 ORTHO05D000057 1.8e-06 55.8 98 38.8
AL8G12770 Arabidopsis lyrata HOM05D000055 ORTHO05D000057 2.4e-06 55.5 91 39.6
BcaC06g34396 Brassica carinata HOM05D000055 ORTHO05D000057 2.4e-06 55.5 88 39.8
C07p29100 Brassica napus HOM05D000055 ORTHO05D000057 2.4e-06 55.5 88 39.8
BolC7t43449H Brassica oleracea HOM05D000055 ORTHO05D000057 2.4e-06 55.5 88 39.8
Cfa000622 Carpinus fangiana HOM05D000055 ORTHO05D000057 2.4e-06 55.5 84 45.2
CiPaw.10G060400 Carya illinoinensis HOM05D000055 ORTHO05D000057 2.4e-06 55.5 88 42.0
MELO3C007208.2 Cucumis melo HOM05D000055 ORTHO05D000057 2.4e-06 55.5 86 41.9
CsaV3_6G050960 Cucumis sativus L. HOM05D000055 ORTHO05D000057 2.4e-06 55.5 86 41.9
Gohir.A06G131600 Gossypium hirsutum HOM05D000055 ORTHO05D000057 2.4e-06 55.5 83 44.6
Manes.17G057100 Manihot esculenta HOM05D000055 ORTHO05D000057 2.4e-06 55.5 85 41.2
Medtr2g016340 Medicago truncatula HOM05D000055 ORTHO05D000057 2.4e-06 55.5 79 43.0
Nitab4.5_0006108g0010 Nicotiana tabacum HOM05D000055 ORTHO05D000057 2.4e-06 55.5 83 39.8
Os01g0206700 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D000057 2.4e-06 55.5 80 38.8
Potri.011G067600 Populus trichocarpa HOM05D000055 ORTHO05D000057 2.4e-06 55.5 84 42.9
Cpa.g.sc7.83 Carica papaya HOM05D000055 ORTHO05D000057 3.1e-06 55.1 82 42.7
FvH4_3g07620 Fragaria vesca HOM05D000055 ORTHO05D000057 3.1e-06 55.1 87 41.4
FAN11G2572 Fragaria x ananassa HOM05D000055 ORTHO05D000057 3.1e-06 55.1 87 41.4
Gohir.D05G157200 Gossypium hirsutum HOM05D000055 ORTHO05D000057 3.1e-06 55.1 85 44.7
Gorai.009G161600 Gossypium raimondii HOM05D000055 ORTHO05D000057 3.1e-06 55.1 85 44.7
Lj6g0023350 Lotus japonicus HOM05D000055 ORTHO05D000057 3.1e-06 55.1 97 41.2
RcHm_v2.0_Chr5g0011071 Rosa chinensis HOM05D000055 ORTHO05D000057 3.1e-06 55.1 88 42.0
Duzib160G0078 Durio zibethinus HOM05D000055 ORTHO05D000057 4.0e-06 54.7 88 38.6
Duzib192G0698 Durio zibethinus HOM05D000055 ORTHO05D000057 4.0e-06 54.7 83 41.0
Lalb_Chr15g0086151 Lupinus albus HOM05D000055 ORTHO05D000057 4.0e-06 54.7 89 40.4
Manes.17G057200 Manihot esculenta HOM05D000055 ORTHO05D000057 4.0e-06 54.7 87 40.2
PSO541G0960 Papaver somniferum HOM05D000055 ORTHO05D000057 4.0e-06 54.7 83 41.0
SalBow7G2946 Salvia bowleyana HOM05D000055 ORTHO05D000057 4.0e-06 54.7 82 42.7
Ah.09g233450 Amaranthus hybridus HOM05D000055 ORTHO05D000057 5.2e-06 54.3 83 45.8
MSTRG.5515 Avicennia marina HOM05D000055 ORTHO05D000057 5.2e-06 54.3 77 40.3
Lalb_Chr15g0086141 Lupinus albus HOM05D000055 ORTHO05D000057 5.2e-06 54.3 81 39.5
Lalb_Chr18g0054611 Lupinus albus HOM05D000055 ORTHO05D000057 5.2e-06 54.3 89 38.2
Lalb_Chr20g0117511 Lupinus albus HOM05D000055 ORTHO05D000057 5.2e-06 54.3 89 40.4
MD10G1278300 Malus domestica HOM05D000055 ORTHO05D000057 5.2e-06 54.3 89 42.7
Manes.16G041200 Manihot esculenta HOM05D000055 ORTHO05D000057 5.2e-06 54.3 84 39.3
Nitab4.5_0013015g0020 Nicotiana tabacum HOM05D000055 ORTHO05D000057 5.2e-06 54.3 82 39.0
MSTRG.13227 Avicennia marina HOM05D000055 ORTHO05D000057 6.9e-06 53.9 88 43.2
MSTRG.16157 Avicennia marina HOM05D000055 ORTHO05D000057 6.9e-06 53.9 85 42.4
ClCG01G023800 Citrullus lanatus HOM05D000055 ORTHO05D000057 6.9e-06 53.9 86 41.9
ECA234G1225 Erigeron canadensis HOM05D000055 ORTHO05D000057 6.9e-06 53.9 87 41.4
ECA248G2706 Erigeron canadensis HOM05D000055 ORTHO05D000057 6.9e-06 53.9 105 36.2
Eucgr.D00481 Eucalyptus grandis HOM05D000055 ORTHO05D000057 6.9e-06 53.9 85 42.4
Glyma.05G158700 Glycine max HOM05D000055 ORTHO05D000057 6.9e-06 53.9 81 44.4
Glyma.15G084100 Glycine max HOM05D000055 ORTHO05D000057 6.9e-06 53.9 95 37.9
PSO675G2160 Papaver somniferum HOM05D000055 ORTHO05D000057 6.9e-06 53.9 83 39.8
BcaB03g12148 Brassica carinata HOM05D000055 ORTHO05D000057 9.0e-06 53.5 86 44.2
CAN.G411.90 Capsicum annuum HOM05D000055 ORTHO05D000057 9.0e-06 53.5 84 39.3


User provided reference genes

Program Settings