Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G644.6 Capsicum annuum HOM05D005297 ORTHO05D006545 3.7e-94 348.2 176 100.0
PGSC0003DMG400007409 Solanum tuberosum HOM05D005297 ORTHO05D006545 3.7e-86 321.6 177 93.2
CAN.G1177.8 Capsicum annuum HOM05D005297 ORTHO05D006545 8.2e-86 320.5 169 97.0
Solyc11g067150.2 Solanum lycopersicum HOM05D005297 ORTHO05D006545 1.1e-85 320.1 176 92.6
Sopen11g026830 Solanum pennellii HOM05D005297 ORTHO05D006545 1.1e-85 320.1 176 92.6
Nitab4.5_0003532g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.2e-83 312.4 177 89.8
Peaxi162Scf00544g00918 Petunia axillaris HOM05D005297 ORTHO05D006545 1.2e-81 306.6 169 92.3
unitig_736.g22397 Utricularia gibba HOM05D005297 ORTHO05D006545 2.0e-79 299.3 177 84.7
Nitab4.5_0021448g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 2.6e-79 298.9 169 89.9
Thecc.09G287800 Theobroma cacao HOM05D005297 ORTHO05D006545 4.4e-79 298.1 176 83.5
CANSAT64G2769 Cannabis sativa HOM05D005297 ORTHO05D006545 5.7e-79 297.7 177 83.6
MSTRG.18743 Avicennia marina HOM05D005297 ORTHO05D006545 1.3e-78 296.6 177 85.9
Migut.N00940 Erythranthe guttata HOM05D005297 ORTHO05D006545 1.4e-77 293.1 177 83.1
QL02p014091 Quercus lobata HOM05D005297 ORTHO05D006545 1.8e-77 292.7 176 84.1
Atru.chr3.3335 Acer truncatum HOM05D005297 ORTHO05D006545 2.4e-77 292.4 176 81.8
Gorai.001G120900 Gossypium raimondii HOM05D005297 ORTHO05D006545 3.1e-77 292.0 176 83.0
Nn2g14072 Nelumbo nucifera HOM05D005297 ORTHO05D006545 3.1e-77 292.0 176 81.8
MELO3C003122.2 Cucumis melo HOM05D005297 ORTHO05D006545 5.3e-77 291.2 174 83.9
CsaV3_4G024870 Cucumis sativus L. HOM05D005297 ORTHO05D006545 5.3e-77 291.2 174 83.9
CSS0010276 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.0e-77 290.8 180 82.2
SalBow6G5239 Salvia bowleyana HOM05D005297 ORTHO05D006545 1.6e-76 289.7 176 85.8
Gohir.D07G112500 Gossypium hirsutum HOM05D005297 ORTHO05D006545 2.0e-76 289.3 176 81.8
Gohir.A07G108700 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 176 81.8
Gohir.A07G108780 Gossypium hirsutum HOM05D005297 ORTHO05D006545 3.5e-76 288.5 176 81.8
Eucgr.J00466 Eucalyptus grandis HOM05D005297 ORTHO05D006545 5.9e-76 287.7 177 81.9
SGA_v2.0_scaffold147G36360 Striga asiatica HOM05D005297 ORTHO05D006545 1.0e-75 287.0 178 81.5
Duzib150G0109 Durio zibethinus HOM05D005297 ORTHO05D006545 1.3e-75 286.6 176 80.7
Sabra09G0113000 Salix brachista HOM05D005297 ORTHO05D006545 1.3e-75 286.6 181 81.2
Sabra09G0115400 Salix brachista HOM05D005297 ORTHO05D006545 1.3e-75 286.6 181 81.2
BcaC04g21280 Brassica carinata HOM05D005297 ORTHO05D006545 1.7e-75 286.2 180 82.2
ECA236G0310 Erigeron canadensis HOM05D005297 ORTHO05D006545 1.7e-75 286.2 180 78.9
Aqoxy4G02831 Aquilegia oxysepala HOM05D005297 ORTHO05D006545 2.2e-75 285.8 179 79.3
Manes.11G159700 Manihot esculenta HOM05D005297 ORTHO05D006545 2.2e-75 285.8 181 78.5
Potri.009G146100 Populus trichocarpa HOM05D005297 ORTHO05D006545 8.5e-75 283.9 181 80.1
Haze_23424 Corylus avellana HOM05D005297 ORTHO05D006545 1.9e-74 282.7 163 86.5
PGR119G1280 Punica granatum HOM05D005297 ORTHO05D006545 1.9e-74 282.7 178 79.8
BcaB01g01797 Brassica carinata HOM05D005297 ORTHO05D006545 3.2e-74 282.0 179 81.0
THA.LOC104799541 Tarenaya hassleriana HOM05D005297 ORTHO05D006545 5.5e-74 281.2 179 77.7
GSVIVG01036187001 Vitis vinifera HOM05D005297 ORTHO05D006545 7.2e-74 280.8 169 84.6
Cc01_g09520 Coffea canephora HOM05D005297 ORTHO05D006545 9.4e-74 280.4 169 83.4
Dinv29444 Davidia involucrata HOM05D005297 ORTHO05D006545 9.4e-74 280.4 163 87.1
Manes.14G159600 Manihot esculenta HOM05D005297 ORTHO05D006545 9.4e-74 280.4 181 77.9
Thhalv10029010m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 1.6e-73 279.6 180 80.0
HanXRQChr13g0408991 Helianthus annuus HOM05D005297 ORTHO05D006545 1.6e-73 279.6 182 76.4
Carub.0006s3210 Capsella rubella HOM05D005297 ORTHO05D006545 2.1e-73 279.3 179 79.3
Ciclev10029400m.g Citrus clementina HOM05D005297 ORTHO05D006545 2.1e-73 279.3 177 80.2
Lsat_1_v5_gn_8_117180 Lactuca sativa HOM05D005297 ORTHO05D006545 2.7e-73 278.9 183 77.0
RcHm_v2.0_Chr5g0054901 Rosa chinensis HOM05D005297 ORTHO05D006545 2.7e-73 278.9 161 84.5
Hund18738 Selenicereus undatus HOM05D005297 ORTHO05D006545 2.7e-73 278.9 176 79.0
TAR623G0730 Trochodendron aralioides HOM05D005297 ORTHO05D006545 2.7e-73 278.9 177 79.7
Aa31LG6G1540 Aethionema arabicum HOM05D005297 ORTHO05D006545 3.6e-73 278.5 179 78.2
A09p26430 Brassica napus HOM05D005297 ORTHO05D006545 3.6e-73 278.5 175 82.3
C09p33610 Brassica napus HOM05D002056 ORTHO05D002289 3.6e-73 278.5 175 82.3
Rhsim13G0108000 Rhododendron simsii HOM05D005297 ORTHO05D006545 3.6e-73 278.5 177 79.1
CARHR253330 Cardamine hirsuta HOM05D005297 ORTHO05D006545 6.1e-73 277.7 184 77.2
RcHm_v2.0_Chr5g0054661 Rosa chinensis HOM05D005297 ORTHO05D006545 1.0e-72 276.9 161 83.9
Sp6g04610 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.0e-72 276.9 179 79.3
EL10Ac7g15793 Beta vulgaris HOM05D005297 ORTHO05D006545 3.0e-72 275.4 175 76.6
CiPaw.13G138500 Carya illinoinensis HOM05D005297 ORTHO05D006545 3.0e-72 275.4 199 71.9
AUR62009792 Chenopodium quinoa HOM05D005297 ORTHO05D006545 3.0e-72 275.4 176 77.8
Medtr0227s0030 Medicago truncatula HOM05D005297 ORTHO05D006545 4.0e-72 275.0 159 85.5
PSO384G0067 Papaver somniferum HOM05D005297 ORTHO05D006545 8.8e-72 273.9 176 76.7
vmacro03296 Vaccinium macrocarpon HOM05D005297 ORTHO05D006545 8.8e-72 273.9 183 76.0
BolC9t56195H Brassica oleracea HOM05D002056 ORTHO05D002289 1.2e-71 273.5 169 83.4
BraA09t38217Z Brassica rapa HOM05D005297 ORTHO05D006545 1.2e-71 273.5 169 83.4
FAN16G3468 Fragaria x ananassa HOM05D005297 ORTHO05D006545 1.2e-71 273.5 161 83.2
MBI17_g16878_MAGBIO Magnolia biondii HOM05D005297 ORTHO05D006545 2.6e-71 272.3 175 74.3
Prupe.6G124400 Prunus persica HOM05D005297 ORTHO05D006545 2.6e-71 272.3 161 82.0
HPP92_006421 Vanilla planifolia HOM05D005297 ORTHO05D006545 2.6e-71 272.3 179 76.5
FAN21G1663 Fragaria x ananassa HOM05D005297 ORTHO05D006545 3.4e-71 271.9 159 83.6
Hma1.2p1_0305F.1_g119460 Hydrangea macrophylla HOM05D005297 ORTHO05D006545 4.4e-71 271.6 153 88.2
Lalb_Chr24g0395231 Lupinus albus HOM05D005297 ORTHO05D006545 4.4e-71 271.6 158 84.2
AL6G47810 Arabidopsis lyrata HOM05D005297 ORTHO05D006545 7.5e-71 270.8 189 74.1
AT4G04190 Arabidopsis thaliana HOM05D005297 ORTHO05D006545 7.5e-71 270.8 185 74.6
Medtr4g088775 Medicago truncatula HOM05D005297 ORTHO05D006545 7.5e-71 270.8 159 84.3
arahy.Tifrunner.gnm1.ann1.CT6H1M Arachis hypogaea HOM05D005297 ORTHO05D006545 9.8e-71 270.4 159 82.4
PSO425G0036 Papaver somniferum HOM05D005297 ORTHO05D006545 9.8e-71 270.4 176 76.1
Sp7g17550 Schrenkiella parvula HOM05D005297 ORTHO05D006545 1.3e-70 270.0 180 77.2
Psat2g130440 Pisum sativum HOM05D005297 ORTHO05D006545 2.2e-70 269.2 159 84.9
TWI79G0927 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 2.2e-70 269.2 176 73.3
MD11G1160800 Malus domestica HOM05D005297 ORTHO05D006545 2.8e-70 268.9 161 80.1
Lj2g0006626 Lotus japonicus HOM05D005297 ORTHO05D006545 3.7e-70 268.5 158 83.5
Sc15g0007560 Simmondsia chinensis HOM05D005297 ORTHO05D006545 4.8e-70 268.1 173 75.7
TWI79G0105 Tripterygium wilfordii HOM05D005297 ORTHO05D006545 4.8e-70 268.1 176 73.3
Cpa.g.sc32.130 Carica papaya HOM05D005297 ORTHO05D006545 6.3e-70 267.7 168 78.6
Zm00001eb084080 Zea mays HOM05D005297 ORTHO05D006545 6.3e-70 267.7 180 75.0
Sc21g0007210 Simmondsia chinensis HOM05D005297 ORTHO05D006545 1.4e-69 266.5 160 81.9
Glyma.12G183000 Glycine max HOM05D005297 ORTHO05D006545 2.4e-69 265.8 159 82.4
Lsat_1_v5_gn_8_90380 Lactuca sativa HOM05D005297 ORTHO05D006545 2.4e-69 265.8 173 77.5
Os04g0410300 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 2.4e-69 265.8 180 73.3
FvH4_3g29610 Fragaria vesca HOM05D005297 ORTHO05D006545 4.1e-69 265.0 159 81.8
FAN11G1678 Fragaria x ananassa HOM05D005297 ORTHO05D006545 4.1e-69 265.0 159 81.8
Glyma.13G318100 Glycine max HOM05D005297 ORTHO05D006545 4.1e-69 265.0 159 82.4
PSO170G0247 Papaver somniferum HOM05D005297 ORTHO05D006545 5.4e-69 264.6 172 75.6
PSO801G0702 Papaver somniferum HOM05D005297 ORTHO05D006545 1.2e-68 263.5 175 74.3
ATR0820G241 Amborella trichopoda HOM05D005297 ORTHO05D006545 1.6e-68 263.1 165 77.0
Phvul.005G125900 Phaseolus vulgaris HOM05D005297 ORTHO05D006545 1.6e-68 263.1 159 81.1
arahy.Tifrunner.gnm1.ann1.Q11QUE Arachis hypogaea HOM05D005297 ORTHO05D006545 2.7e-68 262.3 171 78.4
PSO339G0592 Papaver somniferum HOM05D005297 ORTHO05D006545 1.7e-67 259.6 176 73.3
Sed0022012 Sechium edule HOM05D005297 ORTHO05D006545 2.3e-67 259.2 145 89.0
CSS0048581 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 6.5e-67 257.7 145 87.6
SEGI_17822 Sequoiadendron giganteum HOM05D005297 ORTHO05D006545 1.1e-66 256.9 176 71.6
VMungo1080G0855 Vigna mungo HOM05D005392 ORTHO05D006709 1.6e-65 253.1 145 84.8
COL.COLO4_19936 Corchorus olitorius HOM05D005297 ORTHO05D006545 4.7e-65 251.5 137 92.0
Ca_09074_v3 Cicer arietinum L. HOM05D005297 ORTHO05D006545 8.0e-65 250.8 146 85.6
TAR369G0691 Trochodendron aralioides HOM05D005297 ORTHO05D006545 1.4e-64 250.0 148 84.5
Rhsim05G0032500 Rhododendron simsii HOM05D005297 ORTHO05D006545 5.2e-64 248.1 144 84.0
Nitab4.5_0024933g0010 Nicotiana tabacum HOM05D005297 ORTHO05D006545 1.2e-63 246.9 137 91.2
Rhsim13G0108200 Rhododendron simsii HOM05D005297 ORTHO05D006545 1.2e-63 246.9 142 84.5
arahy.Tifrunner.gnm1.ann1.K2P72U Arachis hypogaea HOM05D005780 ORTHO05D006545 1.5e-63 246.5 139 86.3
Thhalv10005498m.g Eutrema salsugineum HOM05D005297 ORTHO05D006545 5.7e-63 244.6 159 78.0
PSO782G5408 Papaver somniferum HOM05D005297 ORTHO05D006545 2.8e-62 242.3 172 70.9
PSO339G2689 Papaver somniferum HOM05D005297 ORTHO05D006545 4.9e-62 241.5 158 75.3
AUR62039239 Chenopodium quinoa HOM05D005297 ORTHO05D006545 4.1e-61 238.4 173 72.3
Os01g0191000 Oryza sativa ssp. japonica HOM05D005297 ORTHO05D006545 3.8e-59 231.9 162 69.8
Rhsim13G0107700 Rhododendron simsii HOM05D005297 ORTHO05D006545 6.1e-57 224.6 176 67.0
Medtr4g073910 Medicago truncatula HOM05D005297 ORTHO05D006545 2.9e-54 215.7 135 82.2
CSS0004713 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 7.0e-53 211.1 155 71.6
Pp3c27_2700 Physcomitrium patens HOM05D005297 ORTHO05D006545 3.0e-51 205.7 167 58.1
Actinidia24196 Actinidia chinensis HOM05D005392 ORTHO05D006709 5.0e-51 204.9 161 64.0
Mapoly0068s0054 Marchantia polymorpha HOM05D005297 ORTHO05D006545 1.5e-50 203.4 175 54.9
Lj2A987T34 Lonicera japonica HOM05D005297 ORTHO05D006545 5.6e-50 201.4 110 91.8
CDE11G0319 Ceratophyllum demersum HOM05D005297 ORTHO05D006545 1.5e-47 193.4 117 79.5
Duzib168G0206 Durio zibethinus HOM05D005297 ORTHO05D006545 1.5e-47 193.4 117 86.3
arahy.Tifrunner.gnm1.ann1.S3X3J8 Arachis hypogaea HOM05D005297 ORTHO05D006545 5.8e-47 191.4 109 85.3
MD03G1139300 Malus domestica HOM05D005297 ORTHO05D006545 1.4e-45 186.8 141 67.4
PSO782G3247 Papaver somniferum HOM05D005297 ORTHO05D006545 7.0e-45 184.5 127 72.4
TPR.G2691 Trifolium pratense HOM05D005297 ORTHO05D006545 3.9e-43 178.7 113 79.6
CBR_g82609 Chara braunii HOM05D005297 ORTHO05D006545 3.4e-39 165.6 151 53.6
Ca_05140_v3 Cicer arietinum L. HOM05D005297 ORTHO05D012218 4.1e-37 158.7 100 78.0
SHI11151 Sapria himalayana HOM05D005297 ORTHO05D000023 5.4e-37 158.3 137 61.3
DCAR_001100 Daucus carota HOM05D005297 ORTHO05D006545 2.3e-35 152.9 126 62.7
Gorai.006G055300 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.1e-33 146.4 77 90.9
Gorai.003G055900 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.0e-31 139.8 116 66.4
Gorai.003G076100 Gossypium raimondii HOM05D005297 ORTHO05D006545 2.6e-31 139.4 115 65.2
Oeu050204.1 Olea europaea HOM05D005297 ORTHO05D006545 2.9e-30 136.0 185 46.5
Gorai.005G178100 Gossypium raimondii HOM05D005297 ORTHO05D006545 4.1e-29 132.1 77 81.8
arahy.Tifrunner.gnm1.ann1.LDL4WN Arachis hypogaea HOM05D005297 ORTHO05D006545 9.2e-29 131.0 93 72.0
CSS0043339 Camellia sinensis var. sinensis HOM05D005297 ORTHO05D006545 2.1e-28 129.8 145 50.3
Gohir.D09G053026 Gossypium hirsutum HOM05D005297 ORTHO05D006545 4.6e-28 128.6 77 83.1
Gohir.D06G133032 Gossypium hirsutum HOM05D005297 ORTHO05D006545 6.0e-28 128.3 68 89.7
Oeu046141.1 Olea europaea HOM05D005297 ORTHO05D006545 1.5e-26 123.6 82 75.6
QL02p014117 Quercus lobata HOM05D005297 ORTHO05D006545 1.4e-24 117.1 65 89.2
RcHm_v2.0_Chr5g0054771 Rosa chinensis HOM05D005297 ORTHO05D006545 3.1e-24 115.9 120 58.3
C02p40370 Brassica napus HOM05D000848 ORTHO05D000007 3.9e-19 99.0 66 74.2
Gohir.D02G158550 Gossypium hirsutum HOM05D005297 ORTHO05D006545 1.5e-18 97.1 77 66.2
TPR.G32973 Trifolium pratense HOM05D005297 ORTHO05D006545 1.8e-16 90.1 52 82.7
BolC2t10071H Brassica oleracea HOM05D005297 ORTHO05D000007 2.4e-16 89.7 58 77.6
Psat2g121320 Pisum sativum HOM05D005297 ORTHO05D006545 3.1e-16 89.4 58 72.4


User provided reference genes

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