Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G642.1 Capsicum annuum HOM05D000735 ORTHO05D004669 4.3e-95 351.3 175 100.0
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 7.5e-55 217.6 179 71.5
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 3.1e-53 212.2 183 66.7
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 2.1e-49 199.5 160 70.0
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 1.4e-48 196.8 175 65.7
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 4.0e-48 195.3 170 65.9
TAR365G0853 Trochodendron aralioides HOM05D000735 ORTHO05D004669 5.2e-48 194.9 184 63.6
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 2.0e-47 193.0 182 63.2
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 2.0e-47 193.0 157 66.9
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 2.6e-47 192.6 154 72.7
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 2.6e-47 192.6 175 64.0
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 3.4e-47 192.2 179 64.8
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 3.4e-47 192.2 184 64.1
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 1.7e-46 189.9 169 66.3
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 1.7e-46 189.9 172 64.5
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 2.8e-46 189.1 174 66.1
Cc09_g00030 Coffea canephora HOM05D000735 ORTHO05D004669 2.8e-46 189.1 177 62.7
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 2.8e-46 189.1 176 65.3
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 3.7e-46 188.7 154 70.8
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 3.7e-46 188.7 179 64.2
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 4.9e-46 188.3 174 63.8
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 4.9e-46 188.3 179 62.0
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 6.3e-46 188.0 179 63.1
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 6.3e-46 188.0 179 62.0
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 1.1e-45 187.2 176 64.2
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 1.1e-45 187.2 182 63.2
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 1.4e-45 186.8 179 61.5
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 1.8e-45 186.4 168 63.1
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.8e-45 186.4 175 62.9
Cpa.g.sc31.41 Carica papaya HOM05D000735 ORTHO05D004669 2.4e-45 186.0 170 64.7
MELO3C026096.2 Cucumis melo HOM05D000735 ORTHO05D004669 3.1e-45 185.7 182 63.2
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 3.1e-45 185.7 182 63.2
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 3.1e-45 185.7 174 64.4
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 4.1e-45 185.3 171 64.3
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 4.1e-45 185.3 172 64.0
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 4.1e-45 185.3 174 62.1
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 5.4e-45 184.9 175 64.0
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 5.4e-45 184.9 167 66.5
RcHm_v2.0_Chr5g0000051 Rosa chinensis HOM05D000735 ORTHO05D004669 7.0e-45 184.5 192 59.9
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 9.1e-45 184.1 169 63.9
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 9.1e-45 184.1 176 63.6
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.2e-44 183.7 173 63.0
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.2e-44 183.7 169 63.9
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-44 183.7 167 65.3
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.2e-44 183.7 167 65.3
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.2e-44 183.7 167 65.3
ATR0568G172 Amborella trichopoda HOM05D000735 ORTHO05D004669 2.7e-44 182.6 150 70.0
Eucgr.E04241 Eucalyptus grandis HOM05D000735 ORTHO05D004669 2.7e-44 182.6 173 64.2
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 2.7e-44 182.6 187 59.4
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 2.7e-44 182.6 187 59.4
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 4.5e-44 181.8 173 64.7
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 4.5e-44 181.8 174 62.6
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 5.9e-44 181.4 151 64.9
GSVIVG01019363001 Vitis vinifera HOM05D000735 ORTHO05D004669 5.9e-44 181.4 191 58.1
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 1.3e-43 180.3 184 59.8
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 1.3e-43 180.3 166 65.1
QL05p065753 Quercus lobata HOM05D000735 ORTHO05D004669 1.3e-43 180.3 212 55.2
SGA_v2.0_scaffold186G40162 Striga asiatica HOM05D000735 ORTHO05D004669 1.3e-43 180.3 184 58.7
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.7e-43 179.9 173 64.7
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 1.7e-43 179.9 173 64.7
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 2.9e-43 179.1 154 68.8
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 5.0e-43 178.3 175 62.3
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 5.0e-43 178.3 166 64.5
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 8.6e-43 177.6 180 60.6
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 8.6e-43 177.6 150 68.0
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 1.1e-42 177.2 160 66.2
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 1.1e-42 177.2 173 64.2
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.1e-42 177.2 209 53.6
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 1.5e-42 176.8 180 60.0
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.5e-42 176.8 176 63.1
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 1.9e-42 176.4 180 60.0
VMungo1215G1296 Vigna mungo HOM05D000735 ORTHO05D004669 1.9e-42 176.4 141 68.1
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 5.6e-42 174.9 174 61.5
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 9.5e-42 174.1 173 61.3
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 9.5e-42 174.1 176 60.8
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 1.2e-41 173.7 162 64.8
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 2.1e-41 172.9 190 56.3
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 2.1e-41 172.9 178 60.7
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 2.8e-41 172.6 159 64.2
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 4.7e-41 171.8 218 52.8
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 4.7e-41 171.8 181 58.6
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 4.7e-41 171.8 181 58.6
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 4.7e-41 171.8 180 58.3
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 4.7e-41 171.8 178 59.6
Sabra16G0008100 Salix brachista HOM05D000735 ORTHO05D004669 6.1e-41 171.4 185 59.5
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 6.1e-41 171.4 206 49.5
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 8.0e-41 171.0 189 56.1
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 1.4e-40 170.2 176 59.1
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 1.8e-40 169.9 172 59.9
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 2.3e-40 169.5 191 55.0
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 2.3e-40 169.5 193 56.5
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 5.2e-40 168.3 162 62.3
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 5.2e-40 168.3 162 62.3
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 6.8e-40 167.9 160 61.9
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 6.8e-40 167.9 162 61.7
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 8.9e-40 167.5 160 63.1
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 2.6e-39 166.0 212 51.4
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 4.4e-39 165.2 178 56.7
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 1.7e-38 163.3 165 60.6
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 2.9e-38 162.5 157 62.4
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 2.9e-38 162.5 157 62.4
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 4.9e-38 161.8 157 61.1
Os09g0482620 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 4.9e-38 161.8 156 60.9
HanXRQChr14g0455081 Helianthus annuus HOM05D000735 ORTHO05D004669 7.8e-36 154.5 232 47.4
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 5.6e-34 148.3 182 52.7
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 5.6e-34 148.3 159 59.7
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 2.8e-33 146.0 168 54.8
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 2.0e-31 139.8 157 52.9
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 3.3e-26 122.5 67 91.0
Lalb_Chr18g0057601 Lupinus albus HOM05D000735 ORTHO05D004669 1.6e-25 120.2 69 84.1
Lalb_Chr20g0119791 Lupinus albus HOM05D000735 ORTHO05D004669 2.8e-25 119.4 67 86.6
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 4.7e-25 118.6 69 82.6
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 4.7e-25 118.6 67 86.6
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 6.2e-25 118.2 67 86.6
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 5.2e-24 115.2 67 83.6
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 7.5e-23 111.3 160 46.9
SEGI_21103 Sequoiadendron giganteum HOM05D000735 ORTHO05D004669 3.7e-22 109.0 66 83.3
Mapoly0058s0105 Marchantia polymorpha HOM05D000735 ORTHO05D004669 4.1e-21 105.5 152 43.4
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 2.7e-20 102.8 159 41.5
Pp3c3_15950 Physcomitrium patens HOM05D000735 ORTHO05D004669 2.5e-18 96.3 133 46.6
SalBow8G2387 Salvia bowleyana HOM05D000735 ORTHO05D004669 2.1e-17 93.2 59 78.0
Ah.01g012200 Amaranthus hybridus HOM05D000735 ORTHO05D004669 2.8e-17 92.8 61 78.7
HanXRQChr14g0455051 Helianthus annuus HOM05D000735 ORTHO05D004669 2.8e-17 92.8 60 80.0
Pp3c7_5310 Physcomitrium patens HOM05D000735 ORTHO05D004669 8.1e-17 91.3 140 43.6
Sc25g0001890 Simmondsia chinensis HOM05D000735 ORTHO05D004669 1.4e-16 90.5 63 77.8
Ciclev10013365m.g Citrus clementina HOM05D000735 ORTHO05D004669 2.3e-16 89.7 134 47.0
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 2.3e-16 89.7 167 37.7
Dinv04373 Davidia involucrata HOM05D000735 ORTHO05D004669 1.5e-15 87.0 56 78.6
TPR.G10511 Trifolium pratense HOM05D000735 ORTHO05D004669 3.4e-15 85.9 57 80.7
PRCOL_00002497 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 9.9e-15 84.3 171 34.5
Ciclev10024040m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.3e-14 84.0 113 50.4
Lalb_Chr20g0119801 Lupinus albus HOM05D000735 ORTHO05D004669 2.2e-14 83.2 60 75.0
Lalb_Chr18g0057611 Lupinus albus HOM05D000735 ORTHO05D004669 3.7e-14 82.4 60 75.0
Ciclev10026680m.g Citrus clementina HOM05D000735 ORTHO05D004669 4.9e-14 82.0 127 46.5
BcaB02g07228 Brassica carinata HOM05D000735 ORTHO05D004669 2.4e-13 79.7 61 72.1
MCO07G302 Micromonas commoda HOM05D000735 ORTHO05D004669 3.2e-13 79.3 147 37.4
Pp3c9_15590 Physcomitrium patens HOM05D000735 ORTHO05D004669 7.1e-13 78.2 148 37.8
Ciclev10033106m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.6e-12 77.0 58 69.0
Cre13.g589800 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 3.0e-11 72.8 169 32.5
Cre16.g671250 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 2.5e-10 69.7 170 32.9
PRCOL_00005087 Prasinoderma coloniale HOM05D000735 ORTHO05D004669 4.7e-09 65.5 167 31.1
CBR_g31696 Chara braunii HOM05D000735 ORTHO05D000838 1.1e-08 64.3 142 31.0
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 4.0e-08 62.4 31 93.5
MCO01G278 Micromonas commoda HOM05D000735 ORTHO05D004669 5.2e-08 62.0 166 28.3
Cfa024656 Carpinus fangiana HOM05D000735 ORTHO05D004669 3.4e-07 59.3 68 48.5
SMO134G0160 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 7.6e-07 58.2 72 44.4
Cre02.g144550 Chlamydomonas reinhardtii HOM05D000735 ORTHO05D004669 2.2e-06 56.6 66 47.0


User provided reference genes

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