Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 5.4e-259 897.1 444 100.0
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 5.0e-180 634.8 331 93.7
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 1.8e-177 626.3 331 92.4
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 1.2e-173 613.6 331 90.9
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 8.8e-169 597.4 331 86.7
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.5e-163 580.1 350 81.7
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.4e-150 536.2 332 77.4
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 8.9e-145 517.7 330 74.2
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.4e-144 515.8 329 74.2
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 5.7e-144 515.0 329 74.2
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 7.5e-144 514.6 331 73.7
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.3e-143 513.8 330 73.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 1.0e-140 504.2 328 72.3
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 3.9e-140 502.3 331 73.1
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.1e-139 500.7 331 71.6
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.5e-139 500.4 329 72.9
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.9e-139 500.0 331 72.2
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.5e-139 499.6 356 68.3
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.8e-138 496.1 332 71.4
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.0e-137 494.2 332 72.0
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 3.1e-137 492.7 332 72.3
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 6.8e-137 491.5 340 68.5
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.5e-136 490.3 330 69.7
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 9.8e-136 487.6 332 71.1
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 9.8e-136 487.6 330 69.1
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 1.7e-135 486.9 330 71.2
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 1.1e-134 484.2 331 70.7
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 3.2e-134 482.6 327 70.0
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.0e-133 479.9 333 70.6
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 6.0e-133 478.4 329 68.4
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 7.8e-133 478.0 335 69.0
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 1.3e-132 477.2 331 70.4
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.3e-132 477.2 329 69.3
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.9e-132 475.7 326 70.9
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 5.0e-132 475.3 331 69.5
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 5.0e-132 475.3 333 69.1
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 5.0e-132 475.3 333 69.1
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.0e-132 475.3 329 69.0
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 8.6e-132 474.6 332 68.4
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.1e-131 474.2 331 69.2
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 5.6e-131 471.9 332 68.1
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 1.2e-130 470.7 332 68.1
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.6e-130 470.3 345 67.0
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.6e-130 470.3 330 66.4
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 2.1e-130 469.9 330 68.2
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.8e-130 469.5 333 68.8
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 4.7e-130 468.8 326 68.7
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 4.7e-130 468.8 259 87.6
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.1e-129 467.6 332 66.6
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 1.4e-129 467.2 334 68.6
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 6.8e-129 464.9 328 68.6
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 8.9e-129 464.5 330 66.4
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.2e-128 464.2 351 63.2
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.5e-128 463.8 330 66.7
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.0e-128 463.4 328 70.1
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 2.6e-128 463.0 378 62.4
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 3.4e-128 462.6 327 66.7
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 7.5e-128 461.5 333 65.5
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 7.5e-128 461.5 328 69.8
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 8.3e-127 458.0 334 66.8
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.4e-126 457.2 332 66.3
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.9e-126 456.8 330 65.8
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 3.2e-126 456.1 328 67.7
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 5.4e-126 455.3 362 62.2
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.0e-126 454.9 334 65.9
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.6e-125 453.8 330 65.8
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 1.6e-125 453.8 330 67.0
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 7.8e-125 451.4 330 64.8
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 2.3e-124 449.9 330 66.4
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 3.0e-124 449.5 332 65.4
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.6e-124 448.0 332 65.4
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.9e-123 446.8 332 65.4
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 5.6e-123 445.3 336 64.6
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.6e-122 443.7 331 65.3
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.8e-122 443.0 332 65.4
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 3.6e-122 442.6 330 63.6
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 8.1e-122 441.4 350 62.6
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.1e-121 441.0 331 65.3
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 6.8e-121 438.3 331 64.7
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 2.6e-120 436.4 330 64.5
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 3.4e-120 436.0 332 64.5
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 4.4e-120 435.6 331 65.0
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 4.4e-120 435.6 331 65.0
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 2.2e-119 433.3 332 63.6
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 6.4e-119 431.8 332 62.0
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.7e-117 426.4 296 66.9
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.3e-116 424.1 309 66.3
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 1.5e-112 410.6 351 64.1
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 4.4e-112 409.1 282 69.9
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 5.8e-112 408.7 303 65.3
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 2.1e-109 400.2 294 65.3
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 2.4e-102 376.7 288 61.5
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 3.0e-100 369.8 329 53.2
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 6.6e-100 368.6 327 56.9
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 5.6e-99 365.5 301 62.1
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 2.8e-98 363.2 288 63.5
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 9.9e-96 354.8 240 71.2
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 6.4e-95 352.1 294 60.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 2.4e-94 350.1 249 68.7
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 2.7e-93 346.7 250 66.4
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.3e-91 339.3 241 68.9
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.3e-90 337.8 242 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.8e-89 334.0 329 50.8
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 1.5e-88 330.9 322 55.0
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.9e-86 323.9 347 49.0
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.2e-85 321.2 213 69.0
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.6e-85 319.3 241 64.7
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.1e-81 308.1 237 64.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.9e-79 300.1 295 49.2
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.2e-77 294.7 241 61.4
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 4.2e-70 269.6 190 67.9
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.0e-68 265.0 145 87.6
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 3.7e-66 256.5 383 39.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 2.6e-48 197.2 248 42.7
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.8e-42 177.2 340 35.0
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 9.4e-38 162.2 91 86.8
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 9.1e-33 145.6 95 73.7
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 2.7e-32 144.1 106 66.0
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 3.8e-31 140.2 81 85.2
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 2.9e-26 124.0 95 61.1
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 4.9e-26 123.2 113 50.4
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 3.2e-25 120.6 95 60.0
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 2.0e-24 117.9 94 58.5
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 7.8e-24 115.9 361 28.0
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.3e-23 115.2 77 71.4
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 5.0e-23 113.2 361 27.1
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.5e-22 110.9 356 27.2
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 4.3e-22 110.2 73 68.5
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.6e-21 108.2 364 27.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 3.6e-21 107.1 53 94.3
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.6e-19 100.9 361 27.1
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-17 95.5 84 58.3
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 5.6e-06 56.6 37 75.7


User provided reference genes

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