Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G641.37 Capsicum annuum HOM05D004531 ORTHO05D005484 3.7e-118 428.3 230 100.0
PGSC0003DMG400008162 Solanum tuberosum HOM05D004531 ORTHO05D005484 5.1e-112 407.9 230 94.8
Solyc10g079430.2 Solanum lycopersicum HOM05D004531 ORTHO05D005484 1.1e-111 406.8 230 93.9
Nitab4.5_0000646g0260 Nicotiana tabacum HOM05D004531 ORTHO05D005484 5.7e-111 404.4 230 93.9
Nitab4.5_0000082g0350 Nicotiana tabacum HOM05D004531 ORTHO05D005484 3.7e-110 401.7 230 93.5
Nitab4.5_0010736g0010 Nicotiana tabacum HOM05D004531 ORTHO05D005484 1.0e-107 393.7 230 91.7
Peaxi162Scf00002g10416 Petunia axillaris HOM05D004531 ORTHO05D005484 3.8e-99 365.2 263 76.4
PGR042G0151 Punica granatum HOM05D004531 ORTHO05D005484 7.4e-95 350.9 230 80.9
Dinv37065 Davidia involucrata HOM05D004531 ORTHO05D005484 2.8e-94 349.0 230 80.4
GSVIVG01029836001 Vitis vinifera HOM05D004531 ORTHO05D005484 4.8e-94 348.2 230 79.1
TWI77G0822 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 3.1e-93 345.5 230 77.8
Gohir.D10G227700 Gossypium hirsutum HOM05D004531 ORTHO05D005484 4.1e-93 345.1 230 79.6
Atru.chr2.471 Acer truncatum HOM05D004531 ORTHO05D005484 5.3e-93 344.7 230 77.8
Cc06_g18540 Coffea canephora HOM05D004531 ORTHO05D005484 5.3e-93 344.7 230 78.3
Hma1.2p1_0341F.1_g130530 Hydrangea macrophylla HOM05D004531 ORTHO05D005484 5.3e-93 344.7 230 78.3
Lj7A661T48 Lonicera japonica HOM05D004531 ORTHO05D005484 9.1e-93 344.0 230 77.0
Prupe.8G106900 Prunus persica HOM05D004531 ORTHO05D005484 2.6e-92 342.4 230 78.3
Manes.11G057800 Manihot esculenta HOM05D004531 ORTHO05D005484 5.9e-92 341.3 230 77.8
Prupe.4G200900 Prunus persica HOM05D004531 ORTHO05D005484 7.7e-92 340.9 230 77.8
Thecc.05G127100 Theobroma cacao HOM05D004531 ORTHO05D005484 1.0e-91 340.5 230 76.5
Eucgr.A02172 Eucalyptus grandis HOM05D004531 ORTHO05D005484 1.3e-91 340.1 230 77.4
Ciclev10012657m.g Citrus clementina HOM05D004531 ORTHO05D005484 1.7e-91 339.7 230 75.2
RcHm_v2.0_Chr5g0037141 Rosa chinensis HOM05D004531 ORTHO05D005484 2.2e-91 339.3 230 75.2
CANSAT56G3883 Cannabis sativa HOM05D004531 ORTHO05D005484 3.8e-91 338.6 230 76.1
CSS0023033 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 5.0e-91 338.2 230 77.0
Duzib248G1029 Durio zibethinus HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 76.5
Gohir.A06G180300 Gossypium hirsutum HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 78.3
Gorai.011G260100 Gossypium raimondii HOM05D004531 ORTHO05D005484 6.5e-91 337.8 230 77.8
MSTRG.6389 Avicennia marina HOM05D004531 ORTHO05D005484 8.5e-91 337.4 230 76.1
Potri.016G024300 Populus trichocarpa HOM05D004531 ORTHO05D005484 1.9e-90 336.3 230 76.1
Ciclev10010418m.g Citrus clementina HOM05D004531 ORTHO05D005484 3.2e-90 335.5 230 75.7
MELO3C008757.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.7e-89 332.4 230 74.8
CsaV3_2G009570 Cucumis sativus L. HOM05D004531 ORTHO05D005484 3.6e-89 332.0 230 75.7
Sed0018245 Sechium edule HOM05D004531 ORTHO05D005484 3.6e-89 332.0 230 74.8
Sabra16G0021800 Salix brachista HOM05D004531 ORTHO05D005484 1.0e-88 330.5 230 74.8
TAR374G0360 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.0e-88 330.5 232 77.2
ClCG11G010890 Citrullus lanatus HOM05D004531 ORTHO05D005484 2.3e-88 329.3 230 74.8
Migut.J01686 Erythranthe guttata HOM05D004531 ORTHO05D005484 3.9e-88 328.6 232 73.7
SalBow6G4182 Salvia bowleyana HOM05D004531 ORTHO05D005484 3.9e-88 328.6 230 75.2
CiPaw.08G117500 Carya illinoinensis HOM05D004531 ORTHO05D005484 1.1e-87 327.0 230 73.5
Nn5g28465 Nelumbo nucifera HOM05D004531 ORTHO05D005484 3.3e-87 325.5 230 71.3
SGA_v2.0_scaffold69G23138 Striga asiatica HOM05D004531 ORTHO05D005484 7.4e-87 324.3 232 73.3
COL.COLO4_07074 Corchorus olitorius HOM05D004531 ORTHO05D005484 6.3e-86 321.2 230 72.2
FvH4_3g21660 Fragaria vesca HOM05D004531 ORTHO05D005484 8.2e-86 320.9 230 71.7
VMungo0251G1523 Vigna mungo HOM05D004531 ORTHO05D005484 8.2e-86 320.9 230 72.2
MD11G1228700 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-85 320.5 229 73.4
Lalb_Chr13g0291551 Lupinus albus HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 73.0
vmacro07599 Vaccinium macrocarpon HOM05D004531 ORTHO05D005484 1.8e-85 319.7 230 73.0
Phvul.002G203400 Phaseolus vulgaris HOM05D004531 ORTHO05D005484 4.1e-85 318.5 230 72.6
MBI13_g30229_MAGBIO Magnolia biondii HOM05D004531 ORTHO05D005484 9.1e-85 317.4 239 70.7
Glyma.08G077300 Glycine max HOM05D004531 ORTHO05D005484 1.2e-84 317.0 230 71.3
Os01g0810000 Oryza sativa ssp. japonica HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 69.6
Sc15g0002670 Simmondsia chinensis HOM05D004531 ORTHO05D005484 1.6e-84 316.6 230 70.0
MD15G1425000 Malus domestica HOM05D004531 ORTHO05D005484 2.6e-84 315.8 230 72.6
Glyma.05G122300 Glycine max HOM05D004531 ORTHO05D005484 3.5e-84 315.5 230 72.2
Sabra16G0030200 Salix brachista HOM05D004531 ORTHO05D005484 5.9e-84 314.7 220 74.1
DCAR_020613 Daucus carota HOM05D004531 ORTHO05D005484 1.3e-83 313.5 230 70.4
HanXRQChr14g0437741 Helianthus annuus HOM05D004531 ORTHO05D005484 1.7e-83 313.2 230 70.9
ECA238G4589 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.8e-83 312.0 230 70.9
HPP92_027481 Vanilla planifolia HOM05D004531 ORTHO05D005484 5.0e-83 311.6 230 70.4
Aqoxy2G03324 Aquilegia oxysepala HOM05D004531 ORTHO05D005484 1.1e-82 310.5 230 70.9
Ca_18320_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.5e-82 310.1 230 70.4
FAN11G1137 Fragaria x ananassa HOM05D004531 ORTHO05D005484 1.9e-82 309.7 252 65.9
Medtr4g094380 Medicago truncatula HOM05D004531 ORTHO05D005484 1.9e-82 309.7 230 69.1
THA.LOC104820245 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 4.2e-82 308.5 232 70.7
Lj6g0006960 Lotus japonicus HOM05D004531 ORTHO05D005484 7.2e-82 307.8 230 69.1
EL10Ac9g22646 Beta vulgaris HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 67.8
Cpa.g.sc115.24 Carica papaya HOM05D004531 ORTHO05D005484 2.1e-81 306.2 230 69.6
BcaC02g10151 Brassica carinata HOM05D004531 ORTHO05D005484 2.7e-81 305.8 230 68.7
MD11G1228500 Malus domestica HOM05D004531 ORTHO05D005484 3.6e-81 305.4 250 66.8
BcaB02g08172 Brassica carinata HOM05D004531 ORTHO05D005484 4.7e-81 305.1 230 67.8
C04p32210 Brassica napus HOM05D004531 ORTHO05D005484 4.7e-81 305.1 230 68.3
arahy.Tifrunner.gnm1.ann1.8UG22X Arachis hypogaea HOM05D004531 ORTHO05D005484 6.1e-81 304.7 232 70.7
BraA09t40693Z Brassica rapa HOM05D004531 ORTHO05D005484 8.0e-81 304.3 230 67.8
RhsimUnG0021500 Rhododendron simsii HOM05D004531 ORTHO05D005484 8.0e-81 304.3 254 65.7
TPR.G23804 Trifolium pratense HOM05D004531 ORTHO05D005484 8.0e-81 304.3 231 70.6
EL10Ac1g01672 Beta vulgaris HOM05D004531 ORTHO05D005484 1.0e-80 303.9 230 67.8
arahy.Tifrunner.gnm1.ann1.35U2WI Arachis hypogaea HOM05D004531 ORTHO05D005484 1.4e-80 303.5 232 70.3
A04p01660 Brassica napus HOM05D004531 ORTHO05D005484 1.8e-80 303.1 230 68.3
A09p52640 Brassica napus HOM05D004531 ORTHO05D005484 2.3e-80 302.8 230 67.4
BolC8t51130H Brassica oleracea HOM05D004531 ORTHO05D005484 2.3e-80 302.8 230 67.4
C08p35370 Brassica napus HOM05D004531 ORTHO05D005484 6.7e-80 301.2 230 67.0
BcaC07g42771 Brassica carinata HOM05D004531 ORTHO05D005484 8.8e-80 300.8 230 67.4
AUR62034356 Chenopodium quinoa HOM05D004531 ORTHO05D005484 8.8e-80 300.8 230 68.3
Lsat_1_v5_gn_2_52561 Lactuca sativa HOM05D004531 ORTHO05D005484 1.2e-79 300.4 220 70.9
AUR62022353 Chenopodium quinoa HOM05D004531 ORTHO05D005484 2.0e-79 299.7 230 67.4
Psat7g095600 Pisum sativum HOM05D004531 ORTHO05D005484 5.7e-79 298.1 230 68.3
Carub.0005s2711 Capsella rubella HOM05D004531 ORTHO05D005484 1.3e-78 297.0 230 67.0
Sp5g02860 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 67.0
SpUn0080_0040 Schrenkiella parvula HOM05D004531 ORTHO05D005484 2.2e-78 296.2 230 67.0
Gohir.A08G129500 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.8e-78 295.8 230 70.9
AL5G42600 Arabidopsis lyrata HOM05D004531 ORTHO05D005484 1.4e-77 293.5 230 67.4
Haze_23723 Corylus avellana HOM05D004531 ORTHO05D005484 1.4e-77 293.5 307 56.7
arahy.Tifrunner.gnm1.ann1.JM9XLQ Arachis hypogaea HOM05D004531 ORTHO05D005484 1.8e-77 293.1 232 69.4
Thhalv10006222m.g Eutrema salsugineum HOM05D004531 ORTHO05D005484 3.1e-77 292.4 230 66.5
PSO210G4508 Papaver somniferum HOM05D004531 ORTHO05D005484 4.1e-77 292.0 230 67.8
unitig_746.g26802 Utricularia gibba HOM05D004531 ORTHO05D005484 5.3e-77 291.6 230 66.1
AT3G60360 Arabidopsis thaliana HOM05D004531 ORTHO05D005484 7.7e-76 287.7 230 65.2
Aa31LG3G11700 Aethionema arabicum HOM05D004531 ORTHO05D005484 1.0e-75 287.3 231 64.9
CARHR170680 Cardamine hirsuta HOM05D004531 ORTHO05D005484 2.2e-75 286.2 230 64.3
Sopen10g030070 Solanum pennellii HOM05D004531 ORTHO05D005484 8.5e-75 284.3 164 92.7
MELO3C023654.2 Cucumis melo HOM05D004531 ORTHO05D005484 2.5e-74 282.7 236 64.0
Nitab4.5_0002805g0150 Nicotiana tabacum HOM05D004531 ORTHO05D005484 2.5e-74 282.7 164 92.7
ClCG09G010350 Citrullus lanatus HOM05D004531 ORTHO05D005484 1.2e-73 280.4 220 65.9
PSO210G2223 Papaver somniferum HOM05D004531 ORTHO05D005484 1.2e-73 280.4 230 64.8
QL09p051267 Quercus lobata HOM05D004531 ORTHO05D005484 4.0e-72 275.4 360 50.0
SGA_v2.0_scaffold105G30334 Striga asiatica HOM05D004531 ORTHO05D005484 5.7e-71 271.6 199 68.8
TAR636G0629 Trochodendron aralioides HOM05D004531 ORTHO05D005484 2.2e-70 269.6 181 78.5
Zm00001eb369240 Zea mays HOM05D004531 ORTHO05D005484 3.7e-70 268.9 214 65.4
CsaV3_7G024290 Cucumis sativus L. HOM05D004531 ORTHO05D005484 4.1e-69 265.4 230 62.6
RhsimUnG0117400 Rhododendron simsii HOM05D004531 ORTHO05D005484 7.7e-68 261.2 318 51.6
CDE07G2032 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.6e-60 236.9 179 68.2
SMO367G0994 Selaginella moellendorffii HOM05D004531 ORTHO05D005484 1.3e-59 233.8 230 53.0
Cfa002196 Carpinus fangiana HOM05D004531 ORTHO05D005484 8.6e-59 231.1 140 83.6
Duzib052G0496 Durio zibethinus HOM05D004531 ORTHO05D005484 8.6e-59 231.1 166 71.1
AagrBONN_evm.TU.Sc2ySwM_228.1021 Anthoceros agrestis HOM05D004531 ORTHO05D005484 8.0e-57 224.6 231 55.4
Mapoly0074s0052 Marchantia polymorpha HOM05D004531 ORTHO05D005484 1.4e-56 223.8 230 54.8
FAN16G0044 Fragaria x ananassa HOM05D004531 ORTHO05D005484 2.2e-54 216.5 164 68.9
Hund15691 Selenicereus undatus HOM05D004531 ORTHO05D005484 1.1e-53 214.2 141 74.5
Hund22289 Selenicereus undatus HOM05D004531 ORTHO05D005484 6.6e-51 204.9 282 46.5
Ah.13g077510 Amaranthus hybridus HOM05D004531 ORTHO05D005484 4.3e-50 202.2 229 52.0
FAN21G3808 Fragaria x ananassa HOM05D004531 ORTHO05D005484 4.3e-50 202.2 149 70.5
Dinv14546 Davidia involucrata HOM05D004531 ORTHO05D005484 2.8e-49 199.5 117 85.5
Pp3c3_27620 Physcomitrium patens HOM05D004531 ORTHO05D005484 4.7e-49 198.7 226 51.3
ATR1096G053 Amborella trichopoda HOM05D004531 ORTHO05D005484 2.3e-48 196.4 138 68.1
Oeu020249.1 Olea europaea HOM05D004531 ORTHO05D005484 2.7e-44 183.0 111 82.0
Carub.0007s2695 Capsella rubella HOM05D004531 ORTHO05D005484 1.5e-42 177.2 176 55.1
MCO16G699 Micromonas commoda HOM05D004531 ORTHO05D005484 7.3e-42 174.9 241 46.1
CBR_g26482 Chara braunii HOM05D004531 ORTHO05D005484 1.8e-40 170.2 243 44.9
BraA04t15890Z Brassica rapa HOM05D004531 ORTHO05D005484 1.5e-39 167.2 139 64.7
CDE07G0548 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 1.9e-37 160.2 139 59.7
PRCOL_00003072 Prasinoderma coloniale HOM05D004531 ORTHO05D005484 2.4e-37 159.8 266 40.6
Ca_08745_v3 Cicer arietinum L. HOM05D004531 ORTHO05D005484 1.6e-36 157.1 220 45.0
Pp3s222_10 Physcomitrium patens HOM05D004531 ORTHO05D005484 1.6e-36 157.1 147 57.1
FAN25G0149 Fragaria x ananassa HOM05D004531 ORTHO05D005484 3.5e-36 156.0 137 61.3
Cre13.g573050 Chlamydomonas reinhardtii HOM05D004531 ORTHO05D005484 6.2e-33 145.2 293 39.2
Potri.006G026002 Populus trichocarpa HOM05D004531 ORTHO05D005484 4.6e-28 129.0 90 71.1
MD11G1228400 Malus domestica HOM05D004531 ORTHO05D005484 1.1e-26 124.4 121 59.5
Psat3g051800 Pisum sativum HOM05D004531 ORTHO05D005484 4.0e-24 115.9 111 55.0
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 8.4e-22 108.2 79 64.6
TWI38G0613 Tripterygium wilfordii HOM05D004531 ORTHO05D005484 1.7e-19 100.5 106 56.6
CSS0027948 Camellia sinensis var. sinensis HOM05D004531 ORTHO05D005484 2.5e-18 96.7 97 56.7
Zm00001eb262530 Zea mays HOM05D000031 ORTHO05D445172 1.3e-17 94.4 71 60.6
CDE07G1261 Ceratophyllum demersum HOM05D004531 ORTHO05D005484 4.8e-17 92.4 72 63.9
PSO210G0815 Papaver somniferum HOM05D004531 ORTHO05D005484 4.8e-17 92.4 77 64.9
ATR1096G046 Amborella trichopoda HOM05D004531 ORTHO05D005484 1.4e-16 90.9 69 66.7
Zm00001eb180730 Zea mays HOM05D004531 ORTHO05D005484 1.5e-15 87.4 63 63.5
Gohir.A06G180400 Gossypium hirsutum HOM05D004531 ORTHO05D005484 2.6e-15 86.7 54 81.5
Cfa023089 Carpinus fangiana HOM05D004531 ORTHO05D005484 4.5e-15 85.9 132 40.9
ECA238G1549 Erigeron canadensis HOM05D004531 ORTHO05D005484 3.8e-14 82.8 58 70.7
Haze_26248 Corylus avellana HOM05D004531 ORTHO05D005484 4.2e-13 79.3 112 43.8
SalBow8G3341 Salvia bowleyana HOM05D004531 ORTHO05D005484 1.6e-12 77.4 87 52.9
Oeu059360.1 Olea europaea HOM05D004531 ORTHO05D005484 1.3e-11 74.3 92 42.4
Oeu059364.1 Olea europaea HOM05D004531 ORTHO05D290784 1.3e-11 74.3 61 57.4
TAR633G0556 Trochodendron aralioides HOM05D004531 ORTHO05D005484 1.4e-08 64.3 38 76.3
Oeu059357.1 Olea europaea HOM05D004531 ORTHO05D005484 4.0e-08 62.8 41 70.7
MD03G1213700 Malus domestica HOM05D004531 ORTHO05D005484 2.9e-06 56.6 47 63.8


User provided reference genes

Program Settings