Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 8.3e-57 223.4 107 100.0
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.1e-51 204.9 103 96.1
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.2e-51 204.1 102 94.1
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 5.2e-51 204.1 102 94.1
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 8.9e-51 203.4 102 94.1
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 5.8e-50 200.7 103 93.2
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 6.4e-49 197.2 103 90.3
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 8.3e-49 196.8 103 90.3
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 4.3e-45 184.5 103 80.6
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 9.5e-45 183.3 103 80.6
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 1.2e-44 183.0 103 80.6
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 4.0e-43 177.9 103 77.7
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 6.8e-43 177.2 101 79.2
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.5e-42 176.0 103 78.6
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.5e-42 176.0 101 78.2
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 4.4e-42 174.5 102 76.5
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 5.8e-42 174.1 103 74.8
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 9.9e-42 173.3 101 76.2
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 1.3e-41 172.9 102 73.5
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.3e-41 172.9 103 78.6
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.3e-41 172.9 103 78.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 2.2e-41 172.2 101 77.2
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 2.2e-41 172.2 103 76.7
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 2.2e-41 172.2 103 77.7
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.2e-41 172.2 101 76.2
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.9e-41 171.8 103 76.7
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 4.9e-41 171.0 100 77.0
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 4.9e-41 171.0 101 76.2
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 4.9e-41 171.0 101 75.2
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 6.4e-41 170.6 103 71.8
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 8.4e-41 170.2 103 76.7
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 8.4e-41 170.2 103 74.8
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 8.4e-41 170.2 103 74.8
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 8.4e-41 170.2 101 77.2
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.1e-40 169.9 102 75.5
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 1.1e-40 169.9 102 74.5
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 1.1e-40 169.9 103 73.8
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 1.4e-40 169.5 103 73.8
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 1.4e-40 169.5 100 73.0
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 1.9e-40 169.1 102 74.5
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.9e-40 169.1 102 72.5
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 2.4e-40 168.7 103 75.7
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 3.2e-40 168.3 103 72.8
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 3.2e-40 168.3 99 77.8
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 3.2e-40 168.3 103 73.8
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 4.1e-40 167.9 103 75.7
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 4.1e-40 167.9 99 76.8
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.1e-40 167.9 103 74.8
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 5.4e-40 167.5 101 75.2
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 7.1e-40 167.2 103 74.8
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 9.2e-40 166.8 103 72.8
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 9.2e-40 166.8 101 75.2
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 9.2e-40 166.8 101 75.2
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 9.2e-40 166.8 101 75.2
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 9.2e-40 166.8 101 75.2
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 9.2e-40 166.8 102 73.5
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.2e-39 166.4 99 75.8
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.6e-39 166.0 102 73.5
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 1.6e-39 166.0 100 73.0
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.1e-39 165.6 102 73.5
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 2.7e-39 165.2 99 75.8
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 2.7e-39 165.2 101 73.3
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 2.7e-39 165.2 101 74.3
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 2.7e-39 165.2 103 74.8
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.7e-39 165.2 104 75.0
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 3.5e-39 164.9 99 74.7
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 3.5e-39 164.9 103 73.8
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 4.6e-39 164.5 100 73.0
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 4.6e-39 164.5 100 73.0
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 4.6e-39 164.5 101 72.3
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 6.0e-39 164.1 98 76.5
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 6.0e-39 164.1 100 71.0
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 6.0e-39 164.1 100 73.0
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 6.0e-39 164.1 100 73.0
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 7.8e-39 163.7 100 75.0
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.0e-38 163.3 103 72.8
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.0e-38 163.3 102 70.6
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-38 162.9 101 71.3
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 1.3e-38 162.9 101 71.3
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.3e-38 162.9 102 70.6
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 1.3e-38 162.9 100 75.0
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 1.3e-38 162.9 101 71.3
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 1.7e-38 162.5 100 73.0
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 2.3e-38 162.2 100 74.0
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.0e-38 161.8 103 68.9
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 3.0e-38 161.8 100 75.0
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 3.9e-38 161.4 99 73.7
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 6.6e-38 160.6 101 70.3
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 6.6e-38 160.6 100 71.0
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 8.6e-38 160.2 101 70.3
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 8.6e-38 160.2 101 69.3
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 8.6e-38 160.2 100 72.0
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 1.1e-37 159.8 101 70.3
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 1.1e-37 159.8 101 69.3
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-37 159.5 101 69.3
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 1.5e-37 159.5 99 72.7
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 1.5e-37 159.5 101 68.3
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.5e-37 159.5 108 66.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.5e-37 159.5 102 70.6
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 1.5e-37 159.5 100 71.0
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.9e-37 159.1 100 71.0
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 2.5e-37 158.7 100 71.0
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 2.5e-37 158.7 101 68.3
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 3.3e-37 158.3 99 71.7
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 3.3e-37 158.3 89 80.9
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 4.3e-37 157.9 101 70.3
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 5.6e-37 157.5 99 73.7
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 9.6e-37 156.8 100 71.0
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.2e-36 156.4 103 69.9
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 1.2e-36 156.4 101 70.3
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 1.2e-36 156.4 99 70.7
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 1.6e-36 156.0 101 69.3
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 1.6e-36 156.0 103 69.9
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.6e-36 156.0 97 76.3
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 2.1e-36 155.6 99 70.7
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 2.1e-36 155.6 101 67.3
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.1e-36 155.6 100 73.0
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 2.1e-36 155.6 101 66.3
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 2.8e-36 155.2 99 68.7
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 3.6e-36 154.8 102 69.6
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 3.6e-36 154.8 102 69.6
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 6.2e-36 154.1 103 67.0
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 6.2e-36 154.1 95 73.7
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 1.1e-35 153.3 101 66.3
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 3.1e-35 151.8 100 68.0
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 6.9e-35 150.6 96 71.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 9.0e-35 150.2 91 76.9
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 2.0e-34 149.1 100 64.0
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-34 149.1 89 76.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.0e-34 149.1 89 76.4
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 7.6e-34 147.1 89 75.3
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 7.6e-34 147.1 100 68.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-33 146.4 89 75.3
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 2.2e-33 145.6 87 77.0
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 4.9e-33 144.4 100 67.0
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.9e-33 144.4 101 62.4
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.2e-31 139.8 95 67.4
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 2.1e-31 139.0 95 67.4
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.0e-30 136.7 77 80.5
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 6.6e-30 134.0 83 75.9
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 6.6e-30 134.0 100 58.0
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 3.3e-29 131.7 92 64.1
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 6.2e-28 127.5 100 59.0
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.8e-27 125.9 96 54.2
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 4.5e-26 121.3 97 53.6
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.2e-23 113.2 96 52.1
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 2.3e-22 109.0 78 70.5
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 3.0e-22 108.6 103 52.4
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 2.4e-19 99.0 58 77.6
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 4.5e-18 94.7 51 92.2
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 2.7e-15 85.5 92 41.3
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 2.5e-13 79.0 42 83.3
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 4.3e-13 78.2 40 82.5
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 5.3e-11 71.2 41 70.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.7e-07 58.9 48 62.5
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 1.0e-06 57.0 69 46.4
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 1.0e-06 57.0 35 77.1
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 5.1e-06 54.7 113 30.1


User provided reference genes

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