Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 6.8e-56 220.3 103 100.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 1.8e-24 115.9 70 84.3
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 1.5e-23 112.8 70 81.4
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 4.4e-23 111.3 70 80.0
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 9.9e-23 110.2 63 81.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 8.4e-22 107.1 70 75.7
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-20 103.2 71 76.1
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 1.2e-20 103.2 71 76.1
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 2.7e-20 102.1 82 62.2
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 1.0e-19 100.1 71 73.2
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 1.3e-19 99.8 75 69.3
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 2.3e-19 99.0 73 69.9
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 6.6e-19 97.4 65 70.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 6.6e-19 97.4 68 66.2
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-18 96.7 66 68.2
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 1.9e-18 95.9 74 67.6
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.9e-18 95.9 68 67.6
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.5e-18 95.5 68 66.2
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.3e-18 95.1 63 68.3
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 4.3e-18 94.7 63 71.4
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 4.3e-18 94.7 66 68.2
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 4.3e-18 94.7 57 71.9
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.6e-18 94.4 66 65.2
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 7.3e-18 94.0 71 63.4
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 7.3e-18 94.0 64 68.8
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 7.3e-18 94.0 53 79.2
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.3e-17 93.2 67 68.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.3e-17 93.2 67 65.7
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.6e-17 92.8 69 60.9
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 1.6e-17 92.8 67 64.2
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.6e-17 92.8 68 64.7
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.1e-17 92.4 74 64.9
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 2.1e-17 92.4 67 62.7
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 2.1e-17 92.4 68 67.6
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 2.1e-17 92.4 64 68.8
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.2e-17 90.9 67 64.2
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 8.1e-17 90.5 64 65.6
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 8.1e-17 90.5 61 68.9
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 8.1e-17 90.5 68 58.8
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.1e-16 90.1 67 62.7
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.4e-16 89.7 65 64.6
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 1.4e-16 89.7 55 70.9
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-16 89.7 71 60.6
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 1.4e-16 89.7 71 60.6
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 1.4e-16 89.7 66 66.7
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 1.4e-16 89.7 64 64.1
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.8e-16 89.4 48 83.3
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 1.8e-16 89.4 60 68.3
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 1.8e-16 89.4 60 68.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.8e-16 89.4 64 65.6
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 65.7
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 59.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 59.7
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 59.7
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 59.7
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.8e-16 89.4 67 61.2
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 2.4e-16 89.0 63 63.5
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 3.1e-16 88.6 66 63.6
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 3.1e-16 88.6 67 59.7
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.1e-16 88.6 67 59.7
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.1e-16 88.6 67 59.7
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.1e-16 88.6 67 59.7
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 4.0e-16 88.2 64 65.6
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 4.0e-16 88.2 64 64.1
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 4.0e-16 88.2 67 62.7
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 4.0e-16 88.2 67 59.7
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 5.3e-16 87.8 49 75.5
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 5.3e-16 87.8 64 65.6
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 5.3e-16 87.8 49 79.6
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 5.3e-16 87.8 66 66.7
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 6.9e-16 87.4 64 64.1
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 6.9e-16 87.4 64 64.1
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 9.0e-16 87.0 64 62.5
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 9.0e-16 87.0 67 58.2
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 1.2e-15 86.7 64 64.1
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.2e-15 86.7 64 62.5
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-15 86.7 64 62.5
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.2e-15 86.7 49 77.6
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.5e-15 86.3 64 64.1
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 1.5e-15 86.3 64 64.1
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.5e-15 86.3 64 62.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.5e-15 86.3 68 61.8
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.0e-15 85.9 54 72.2
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.0e-15 85.9 66 62.1
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-15 85.9 66 60.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 2.0e-15 85.9 66 60.6
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.0e-15 85.9 54 68.5
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.0e-15 85.9 54 68.5
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.6e-15 85.5 64 62.5
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 3.4e-15 85.1 64 62.5
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 3.4e-15 85.1 64 62.5
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 3.4e-15 85.1 66 60.6
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 3.4e-15 85.1 64 62.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.4e-15 85.1 60 65.0
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 3.4e-15 85.1 63 66.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 3.4e-15 85.1 49 73.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 4.4e-15 84.7 64 59.4
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 4.4e-15 84.7 61 63.9
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-15 84.7 67 59.7
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 4.4e-15 84.7 64 62.5
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.4e-15 84.7 48 77.1
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 4.4e-15 84.7 48 77.1
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.4e-15 84.7 62 66.1
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 5.8e-15 84.3 64 60.9
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 5.8e-15 84.3 64 60.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 5.8e-15 84.3 47 76.6
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 5.8e-15 84.3 62 64.5
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 7.6e-15 84.0 66 59.1
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 7.6e-15 84.0 66 59.1
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 7.6e-15 84.0 63 63.5
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 7.6e-15 84.0 64 60.9
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.6e-15 84.0 64 62.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 7.6e-15 84.0 66 60.6
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 7.6e-15 84.0 59 64.4
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 9.9e-15 83.6 49 71.4
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.9e-15 83.6 67 62.7
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.3e-14 83.2 64 60.9
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.3e-14 83.2 64 60.9
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-14 83.2 64 60.9
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.3e-14 83.2 64 60.9
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-14 82.8 64 60.9
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 2.2e-14 82.4 60 65.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.8e-14 81.6 70 60.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 4.9e-14 81.3 64 62.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 4.9e-14 81.3 64 59.4
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 6.4e-14 80.9 49 71.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 6.4e-14 80.9 40 82.5
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 6.4e-14 80.9 64 60.9
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 8.4e-14 80.5 64 60.9
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 5.4e-13 77.8 64 56.2
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 7.1e-13 77.4 47 72.3
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 1.2e-12 76.6 64 59.4
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 1.2e-12 76.6 64 59.4
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.6e-12 76.3 66 53.0
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.1e-12 75.9 64 56.2
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 2.7e-12 75.5 64 56.2
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 3.5e-12 75.1 64 53.1
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 3.9e-11 71.6 45 71.1
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 5.1e-11 71.2 59 52.5
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 6.6e-11 70.9 54 55.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 6.6e-11 70.9 59 52.5
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 8.7e-11 70.5 49 61.2
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 1.5e-10 69.7 59 52.5
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 3.3e-10 68.6 49 61.2
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.6e-09 66.2 54 53.7
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 2.1e-09 65.9 56 50.0
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.6e-09 65.1 59 47.5
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 4.8e-09 64.7 56 48.2
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 1.1e-08 63.5 64 43.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.8e-08 62.8 39 61.5
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 9.9e-07 57.0 28 78.6


User provided reference genes

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