Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 9.4e-107 390.2 196 100.0
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 6.5e-92 340.9 196 89.3
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 2.8e-90 335.5 196 88.3
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 2.8e-90 335.5 196 88.3
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.2e-82 310.1 205 80.0
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.0e-81 307.0 203 78.8
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 1.7e-68 263.1 192 71.9
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 8.3e-63 244.2 197 64.5
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 7.1e-62 241.1 191 67.5
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 9.2e-62 240.7 194 65.5
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 1.6e-61 240.0 202 64.4
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 2.1e-61 239.6 197 64.0
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 8.6e-60 234.2 199 61.8
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 2.5e-59 232.6 140 76.4
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.6e-58 229.9 181 66.3
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 6.2e-58 228.0 194 61.3
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 1.1e-57 227.3 187 63.1
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 1.4e-57 226.9 139 73.4
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.8e-57 226.5 194 63.4
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 5.2e-57 224.9 194 60.8
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 8.9e-57 224.2 190 65.3
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 8.9e-57 224.2 190 65.3
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.2e-56 223.8 197 61.4
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.5e-56 223.4 139 75.5
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 2.0e-56 223.0 139 74.1
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 3.4e-56 222.2 143 72.7
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 3.4e-56 222.2 139 74.1
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 3.4e-56 222.2 140 75.0
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 4.4e-56 221.9 195 62.1
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 5.8e-56 221.5 139 74.1
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 2.2e-55 219.5 137 73.7
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 3.8e-55 218.8 194 62.9
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 6.4e-55 218.0 177 61.6
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 6.4e-55 218.0 148 68.9
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 8.4e-55 217.6 188 61.2
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 1.1e-54 217.2 195 57.4
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.9e-54 216.5 188 60.6
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.9e-54 216.5 188 60.6
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 2.4e-54 216.1 190 57.9
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 2.4e-54 216.1 144 70.1
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 2.4e-54 216.1 145 69.7
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 3.2e-54 215.7 189 57.7
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 3.2e-54 215.7 196 61.2
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.2e-54 215.7 190 63.7
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 3.2e-54 215.7 153 67.3
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 4.2e-54 215.3 185 60.5
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 4.2e-54 215.3 181 65.2
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 1.6e-53 213.4 150 67.3
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 2.1e-53 213.0 189 60.8
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 2.7e-53 212.6 196 60.2
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 2.7e-53 212.6 139 69.8
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 2.7e-53 212.6 197 57.4
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 2.7e-53 212.6 126 76.2
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 2.7e-53 212.6 192 57.8
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 3.5e-53 212.2 153 66.7
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 3.5e-53 212.2 186 57.5
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 4.6e-53 211.8 197 57.4
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 6.0e-53 211.5 207 58.9
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 7.8e-53 211.1 185 60.0
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 1.0e-52 210.7 191 59.7
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.3e-52 209.5 178 60.1
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 2.3e-52 209.5 179 59.2
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 3.0e-52 209.1 137 71.5
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 3.0e-52 209.1 158 65.2
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 3.0e-52 209.1 153 68.6
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 3.9e-52 208.8 201 57.2
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 5.1e-52 208.4 193 59.1
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 5.1e-52 208.4 193 59.1
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 6.6e-52 208.0 137 70.8
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 6.6e-52 208.0 178 61.2
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 6.6e-52 208.0 126 73.8
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 8.7e-52 207.6 193 59.1
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 8.7e-52 207.6 142 67.6
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.5e-51 206.8 186 56.5
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 1.5e-51 206.8 151 68.2
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.5e-51 206.8 198 57.6
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 1.9e-51 206.5 142 69.0
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 1.9e-51 206.5 195 58.5
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 2.5e-51 206.1 188 59.0
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 3.3e-51 205.7 150 66.7
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 3.3e-51 205.7 140 70.7
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 5.6e-51 204.9 126 72.2
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 5.6e-51 204.9 193 58.5
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 7.3e-51 204.5 152 66.4
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 7.3e-51 204.5 177 60.5
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.6e-50 203.4 209 54.5
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.1e-49 200.7 148 63.5
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 1.1e-49 200.7 189 54.5
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 1.4e-49 200.3 201 56.2
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 3.1e-49 199.1 198 55.1
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 1.5e-48 196.8 162 62.3
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 5.8e-48 194.9 194 54.6
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 5.8e-48 194.9 136 69.1
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 7.6e-48 194.5 219 52.5
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 9.9e-48 194.1 143 61.5
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.3e-47 193.7 111 77.5
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 1.1e-46 190.7 123 69.9
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 2.4e-46 189.5 116 75.9
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 9.3e-46 187.6 116 77.6
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 1.6e-45 186.8 246 46.7
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 7.8e-45 184.5 228 48.2
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 6.6e-44 181.4 163 58.9
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 5.6e-43 178.3 114 66.7
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 3.6e-42 175.6 150 63.3
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 1.4e-41 173.7 120 65.0
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 2.4e-41 172.9 138 56.5
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 2.0e-40 169.9 112 67.0
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 7.6e-40 167.9 152 63.2
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 4.2e-38 162.2 115 65.2
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.2e-37 160.6 91 78.0
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 7.9e-37 157.9 160 59.4
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 1.5e-35 153.7 110 70.0
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 3.3e-35 152.5 122 59.8
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 2.1e-34 149.8 125 54.4
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 3.7e-34 149.1 130 52.3
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 5.3e-33 145.2 103 68.0
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.2e-32 144.1 99 68.7
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 1.5e-32 143.7 109 60.6
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 7.6e-32 141.4 94 69.1
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 2.5e-30 136.3 90 65.6
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 1.3e-28 130.6 85 74.1
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 1.3e-28 130.6 73 82.2
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 5.1e-28 128.6 111 54.1
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 2.8e-26 122.9 124 42.7
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 5.3e-25 118.6 115 51.3
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 4.6e-21 105.5 97 47.4
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 4.3e-19 99.0 112 53.6
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 4.3e-19 99.0 92 55.4
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 2.8e-18 96.3 111 42.3
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 2.6e-16 89.7 105 47.6
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 5.0e-15 85.5 112 39.3
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 1.8e-12 77.0 135 42.2
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 4.1e-09 65.9 37 78.4
Lsat_1_v5_gn_8_145740 Lactuca sativa HOM05D005244 ORTHO05D006780 1.5e-08 63.9 69 56.5
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 7.2e-06 55.1 43 55.8


User provided reference genes

Program Settings