Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G64.3 Capsicum annuum HOM05D001608 ORTHO05D002070 1.5e-40 169.1 84 100.0
PGSC0003DMG400014419 Solanum tuberosum HOM05D001608 ORTHO05D002070 4.3e-16 87.8 68 63.2
vmacro02213 Vaccinium macrocarpon HOM05D001608 ORTHO05D002070 4.3e-16 87.8 57 71.9
Nitab4.5_0000168g0240 Nicotiana tabacum HOM05D001608 ORTHO05D002070 5.6e-16 87.4 57 70.2
Nitab4.5_0005265g0010 Nicotiana tabacum HOM05D001608 ORTHO05D002070 5.6e-16 87.4 71 56.3
Nitab4.5_0001393g0100 Nicotiana tabacum HOM05D001608 ORTHO05D002070 9.5e-16 86.7 56 71.4
Peaxi162Scf00660g00007 Petunia axillaris HOM05D001608 ORTHO05D002070 9.5e-16 86.7 57 70.2
CAN.G227.14 Capsicum annuum HOM05D001608 ORTHO05D002070 1.2e-15 86.3 70 62.9
Rhsim06G0220400 Rhododendron simsii HOM05D001608 ORTHO05D002070 3.6e-15 84.7 56 69.6
Cc05_g14080 Coffea canephora HOM05D001608 ORTHO05D002070 4.7e-15 84.3 58 72.4
Dinv22245 Davidia involucrata HOM05D001608 ORTHO05D002070 4.7e-15 84.3 58 72.4
Dinv40783 Davidia involucrata HOM05D001608 ORTHO05D002070 4.7e-15 84.3 58 72.4
Lj8A171G40 Lonicera japonica HOM05D001608 ORTHO05D002070 6.2e-15 84.0 58 72.4
CSS0031204 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 1.1e-14 83.2 58 70.7
Actinidia32267 Actinidia chinensis HOM05D001608 ORTHO05D002070 1.4e-14 82.8 58 70.7
CAN.G952.4 Capsicum annuum HOM05D001608 ORTHO05D002070 1.4e-14 82.8 56 67.9
Actinidia10745 Actinidia chinensis HOM05D001608 ORTHO05D002070 3.1e-14 81.6 58 69.0
HanXRQChr05g0159811 Helianthus annuus HOM05D001608 ORTHO05D002070 3.1e-14 81.6 58 69.0
HanXRQChr08g0233511 Helianthus annuus HOM05D001608 ORTHO05D002070 3.1e-14 81.6 58 69.0
Solyc12g014400.3 Solanum lycopersicum HOM05D001608 ORTHO05D002070 3.1e-14 81.6 57 64.9
Sopen12g007250 Solanum pennellii HOM05D001608 ORTHO05D002070 3.1e-14 81.6 57 64.9
Lj6g0020307 Lotus japonicus HOM05D001608 ORTHO05D002070 5.2e-14 80.9 58 67.2
Hma1.2p1_2862F.1_g329570 Hydrangea macrophylla HOM05D001608 ORTHO05D002070 6.8e-14 80.5 58 69.0
MSTRG.12987 Avicennia marina HOM05D001608 ORTHO05D002070 2.6e-13 78.6 58 65.5
Cfa020305 Carpinus fangiana HOM05D001608 ORTHO05D002070 2.6e-13 78.6 58 67.2
Sabra16G0237000 Salix brachista HOM05D001608 ORTHO05D002070 3.4e-13 78.2 59 69.5
SGA_v2.0_scaffold8G04343 Striga asiatica HOM05D001608 ORTHO05D002070 3.4e-13 78.2 59 67.8
CSS0005633 Camellia sinensis var. sinensis HOM05D001608 ORTHO05D002070 4.4e-13 77.8 58 65.5
CiPaw.11G192700 Carya illinoinensis HOM05D001608 ORTHO05D002070 4.4e-13 77.8 59 67.8
Potri.001G359300 Populus trichocarpa HOM05D001608 ORTHO05D002070 4.4e-13 77.8 60 68.3
ECA246G4587 Erigeron canadensis HOM05D001608 ORTHO05D002070 5.8e-13 77.4 58 65.5
RhsimUnG0248500 Rhododendron simsii HOM05D001608 ORTHO05D002070 5.8e-13 77.4 58 65.5
Sabra11G0073200 Salix brachista HOM05D001608 ORTHO05D002070 5.8e-13 77.4 60 68.3
Sabra11G0078700 Salix brachista HOM05D001608 ORTHO05D002070 5.8e-13 77.4 60 68.3
Oeu008014.1 Olea europaea HOM05D001608 ORTHO05D002070 7.6e-13 77.0 59 67.8
GSVIVG01037697001 Vitis vinifera HOM05D001608 ORTHO05D002070 7.6e-13 77.0 59 64.4
DCAR_022586 Daucus carota HOM05D001608 ORTHO05D002070 1.3e-12 76.3 58 65.5
SGA_v2.0_scaffold363G49947 Striga asiatica HOM05D001608 ORTHO05D002070 1.7e-12 75.9 56 66.1
Glyma.08G319800 Glycine max HOM05D001608 ORTHO05D002070 2.2e-12 75.5 59 66.1
Potri.011G086800 Populus trichocarpa HOM05D001608 ORTHO05D002070 2.2e-12 75.5 59 67.8
Nitab4.5_0004829g0080 Nicotiana tabacum HOM05D001608 ORTHO05D002070 2.9e-12 75.1 74 54.1
Psat5g038760 Pisum sativum HOM05D001608 ORTHO05D002070 2.9e-12 75.1 59 64.4
TPR.G33747 Trifolium pratense HOM05D001608 ORTHO05D002070 2.9e-12 75.1 59 64.4
Actinidia35364 Actinidia chinensis HOM05D001608 ORTHO05D002070 3.8e-12 74.7 62 61.3
Ca_25811_v3 Cicer arietinum L. HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 64.4
ClCG09G010980 Citrullus lanatus HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 66.1
CsaV3_7G022000 Cucumis sativus L. HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 66.1
Gohir.A13G215600 Gossypium hirsutum HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 67.8
Gohir.D13G219300 Gossypium hirsutum HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 67.8
Gorai.013G250200 Gossypium raimondii HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 67.8
Manes.03G133200 Manihot esculenta HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 67.8
Sed0022863 Sechium edule HOM05D001608 ORTHO05D002070 3.8e-12 74.7 59 66.1
EL10Ac4g07759 Beta vulgaris HOM05D001608 ORTHO05D002070 4.9e-12 74.3 58 60.3
Medtr3g053170 Medicago truncatula HOM05D001608 ORTHO05D002070 4.9e-12 74.3 59 62.7
CiPaw.12G132100 Carya illinoinensis HOM05D001608 ORTHO05D002070 6.4e-12 73.9 59 66.1
Manes.15G068100 Manihot esculenta HOM05D001608 ORTHO05D002070 6.4e-12 73.9 59 66.1
QL09p024286 Quercus lobata HOM05D001608 ORTHO05D002070 6.4e-12 73.9 58 65.5
Oeu026404.2 Olea europaea HOM05D001608 ORTHO05D002070 8.4e-12 73.6 59 66.1
Prupe.2G057500 Prunus persica HOM05D001608 ORTHO05D002070 8.4e-12 73.6 59 66.1
Thecc.09G223800 Theobroma cacao HOM05D001608 ORTHO05D002070 8.4e-12 73.6 59 66.1
Phvul.006G046900 Phaseolus vulgaris HOM05D001608 ORTHO05D002070 1.1e-11 73.2 59 66.1
VMungo0540G2230 Vigna mungo HOM05D001608 ORTHO05D002070 1.1e-11 73.2 59 66.1
RcHm_v2.0_Chr5g0040921 Rosa chinensis HOM05D001608 ORTHO05D002070 1.4e-11 72.8 58 65.5
Gorai.010G128500 Gossypium raimondii HOM05D001608 ORTHO05D002070 1.9e-11 72.4 59 64.4
Phvul.008G269900 Phaseolus vulgaris HOM05D001608 ORTHO05D002070 1.9e-11 72.4 62 61.3
Prupe.4G219100 Prunus persica HOM05D001608 ORTHO05D002070 1.9e-11 72.4 59 64.4
Sc16g0005850 Simmondsia chinensis HOM05D001608 ORTHO05D002070 1.9e-11 72.4 54 63.0
VMungo0647G0883 Vigna mungo HOM05D001608 ORTHO05D002070 1.9e-11 72.4 62 61.3
AUR62015827 Chenopodium quinoa HOM05D001608 ORTHO05D002070 2.4e-11 72.0 58 60.3
AUR62020391 Chenopodium quinoa HOM05D001608 ORTHO05D002070 2.4e-11 72.0 58 60.3
Glyma.18G092700 Glycine max HOM05D001608 ORTHO05D002070 2.4e-11 72.0 59 64.4
Gohir.D06G112700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 2.4e-11 72.0 59 64.4
Migut.H01806 Erythranthe guttata HOM05D001608 ORTHO05D002070 3.2e-11 71.6 54 61.1
CANSAT78G0203 Cannabis sativa HOM05D001608 ORTHO05D002070 4.1e-11 71.2 59 62.7
CAN.G492.10 Capsicum annuum HOM05D001608 ORTHO05D002070 4.1e-11 71.2 48 75.0
FvH4_3g23230 Fragaria vesca HOM05D001608 ORTHO05D002070 4.1e-11 71.2 58 62.1
FAN11G0513 Fragaria x ananassa HOM05D001608 ORTHO05D002070 4.1e-11 71.2 58 62.1
Gohir.A06G108700 Gossypium hirsutum HOM05D001608 ORTHO05D002070 5.4e-11 70.9 59 64.4
Lsat_1_v5_gn_5_3060 Lactuca sativa HOM05D001608 ORTHO05D002070 5.4e-11 70.9 57 59.6
TWI38G0984 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 5.4e-11 70.9 64 56.2
Ciclev10010530m.g Citrus clementina HOM05D001608 ORTHO05D002070 7.1e-11 70.5 59 64.4
Duzib170G0224 Durio zibethinus HOM05D001608 ORTHO05D002070 7.1e-11 70.5 59 64.4
FAN16G2637 Fragaria x ananassa HOM05D001608 ORTHO05D002070 7.1e-11 70.5 58 62.1
COL.COLO4_09899 Corchorus olitorius HOM05D001608 ORTHO05D002070 9.2e-11 70.1 56 66.1
MD03G1196300 Malus domestica HOM05D001608 ORTHO05D002070 1.2e-10 69.7 59 64.4
MBI10_g29395_MAGBIO Magnolia biondii HOM05D001608 ORTHO05D002070 2.1e-10 68.9 59 54.2
Sopen10g002180 Solanum pennellii HOM05D001608 ORTHO05D002070 2.1e-10 68.9 54 59.3
TAR624G0321 Trochodendron aralioides HOM05D001608 ORTHO05D002070 3.5e-10 68.2 60 58.3
arahy.Tifrunner.gnm1.ann1.NRH3QV Arachis hypogaea HOM05D001608 ORTHO05D002070 4.6e-10 67.8 59 61.0
arahy.Tifrunner.gnm1.ann1.RCKD5T Arachis hypogaea HOM05D001608 ORTHO05D002070 4.6e-10 67.8 59 61.0
Glyma.02G293100 Glycine max HOM05D001608 ORTHO05D002070 7.8e-10 67.0 59 57.6
TWI39G0872 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 7.8e-10 67.0 59 55.9
FAN25G1252 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.3e-09 66.2 58 60.3
FAN25G2099 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.3e-09 66.2 58 60.3
PGR083G0879 Punica granatum HOM05D001608 ORTHO05D002070 1.7e-09 65.9 59 61.0
THA.LOC104817897 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 2.3e-09 65.5 58 60.3
TAR626G1379 Trochodendron aralioides HOM05D001608 ORTHO05D002070 2.3e-09 65.5 59 54.2
FAN07G2124 Fragaria x ananassa HOM05D001608 ORTHO05D002070 3.0e-09 65.1 59 57.6
RcHm_v2.0_Chr4g0446921 Rosa chinensis HOM05D001608 ORTHO05D002070 3.9e-09 64.7 59 57.6
FvH4_4g37120 Fragaria vesca HOM05D001608 ORTHO05D002070 5.1e-09 64.3 59 57.6
TWI38G1473 Tripterygium wilfordii HOM05D001608 ORTHO05D002070 5.1e-09 64.3 60 53.3
TAR629G2112 Trochodendron aralioides HOM05D001608 ORTHO05D002070 5.1e-09 64.3 63 55.6
MD11G1212600 Malus domestica HOM05D001608 ORTHO05D002070 6.6e-09 63.9 59 59.3
MD13G1003400 Malus domestica HOM05D001608 ORTHO05D002070 6.6e-09 63.9 59 57.6
Aqoxy1G03055 Aquilegia oxysepala HOM05D001608 ORTHO05D002070 8.7e-09 63.5 61 50.8
Migut.M01732 Erythranthe guttata HOM05D001608 ORTHO05D002070 8.7e-09 63.5 58 51.7
arahy.Tifrunner.gnm1.ann1.7D7HLL Arachis hypogaea HOM05D001608 ORTHO05D002070 1.1e-08 63.2 60 53.3
Glyma.14G021500 Glycine max HOM05D001608 ORTHO05D002070 1.1e-08 63.2 59 55.9
arahy.Tifrunner.gnm1.ann1.VY5Z2H Arachis hypogaea HOM05D001608 ORTHO05D002070 1.5e-08 62.8 57 56.1
CAN.G2012.4 Capsicum annuum HOM05D001608 ORTHO05D002070 2.5e-08 62.0 52 55.8
Lj1A878T42 Lonicera japonica HOM05D001608 ORTHO05D002070 2.5e-08 62.0 49 55.1
Solyc10g006190.4 Solanum lycopersicum HOM05D001608 ORTHO05D002070 2.5e-08 62.0 53 56.6
PSO541G0308 Papaver somniferum HOM05D001608 ORTHO05D002070 3.3e-08 61.6 61 49.2
PSO675G7108 Papaver somniferum HOM05D001608 ORTHO05D002070 3.3e-08 61.6 61 49.2
THA.LOC104816911 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 3.3e-08 61.6 62 53.2
Sopen10g002150 Solanum pennellii HOM05D001608 ORTHO05D002070 4.3e-08 61.2 53 56.6
Carub.0003s2076 Capsella rubella HOM05D001608 ORTHO05D002070 7.3e-08 60.5 55 54.5
Lalb_Chr15g0081501 Lupinus albus HOM05D001608 ORTHO05D002070 7.3e-08 60.5 56 55.4
THA.LOC104811126 Tarenaya hassleriana HOM05D001608 ORTHO05D002070 7.3e-08 60.5 58 50.0
Aa31LG8G7610 Aethionema arabicum HOM05D001608 ORTHO05D002070 1.2e-07 59.7 55 54.5
Eucgr.F00722 Eucalyptus grandis HOM05D001608 ORTHO05D002070 1.2e-07 59.7 56 58.9
AL3G34720 Arabidopsis lyrata HOM05D001608 ORTHO05D002070 1.6e-07 59.3 55 54.5
FAN21G0147 Fragaria x ananassa HOM05D001608 ORTHO05D002070 1.6e-07 59.3 49 61.2
MD16G1004000 Malus domestica HOM05D001608 ORTHO05D002070 1.6e-07 59.3 59 52.5
Nn1g07232 Nelumbo nucifera HOM05D001608 ORTHO05D002070 1.6e-07 59.3 60 51.7
Prupe.1G349000 Prunus persica HOM05D001608 ORTHO05D002070 1.6e-07 59.3 59 55.9
Atru.chr2.3496 Acer truncatum HOM05D001608 ORTHO05D002070 2.1e-07 58.9 59 59.3
Nn6g35166 Nelumbo nucifera HOM05D001608 ORTHO05D002070 2.1e-07 58.9 60 53.3
Lalb_Chr20g0115861 Lupinus albus HOM05D001608 ORTHO05D002070 2.8e-07 58.5 56 53.6
Nn1g03451 Nelumbo nucifera HOM05D001608 ORTHO05D002070 2.8e-07 58.5 60 48.3
unitig_8.g4795 Utricularia gibba HOM05D001608 ORTHO05D002070 2.8e-07 58.5 49 55.1
AT3G20800 Arabidopsis thaliana HOM05D001608 ORTHO05D002070 4.7e-07 57.8 55 52.7
CAN.G492.16 Capsicum annuum HOM05D001608 ORTHO05D002070 6.2e-07 57.4 50 56.0
Nn2g13904 Nelumbo nucifera HOM05D001608 ORTHO05D002070 6.2e-07 57.4 57 50.9
PGR031G1391 Punica granatum HOM05D001608 ORTHO05D002070 6.2e-07 57.4 58 56.9
CAN.G492.6 Capsicum annuum HOM05D001608 ORTHO05D002070 8.1e-07 57.0 49 57.1
BcaB04g20627 Brassica carinata HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BcaB06g26150 Brassica carinata HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BcaC05g28280 Brassica carinata HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BcaC09g49022 Brassica carinata HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
A01p34020 Brassica napus HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
A05p27980 Brassica napus HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
C01p43420 Brassica napus HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
C05p43280 Brassica napus HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BolC5t33060H Brassica oleracea HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BraA01t03506Z Brassica rapa HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
BraA05t21681Z Brassica rapa HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
CARHR096640 Cardamine hirsuta HOM05D001608 ORTHO05D002070 1.1e-06 56.6 58 50.0
Sp3g18820 Schrenkiella parvula HOM05D001608 ORTHO05D002070 1.1e-06 56.6 55 52.7
Aqoxy3G01933 Aquilegia oxysepala HOM05D001608 ORTHO05D002070 1.8e-06 55.8 58 44.8
Sp6g30990 Schrenkiella parvula HOM05D001608 ORTHO05D002070 1.8e-06 55.8 56 51.8
Thhalv10021160m.g Eutrema salsugineum HOM05D001608 ORTHO05D002070 5.2e-06 54.3 55 50.9
Solyc10g006170.4 Solanum lycopersicum HOM05D001608 ORTHO05D002070 6.9e-06 53.9 54 51.9


User provided reference genes

Program Settings