Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.2e-216 756.1 370 100.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.7e-154 547.4 385 72.7
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.4e-148 530.0 385 71.2
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 6.0e-147 524.6 385 70.6
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.5e-142 508.4 381 66.4
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.0e-138 495.7 390 64.1
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 8.5e-109 397.9 358 60.9
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 9.8e-89 331.3 352 52.6
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 7.0e-87 325.1 442 43.2
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.2e-81 307.8 381 45.4
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 2.0e-78 297.0 367 45.8
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 9.5e-76 288.1 375 42.9
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 2.8e-75 286.6 371 44.2
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.4e-74 284.3 392 43.9
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.3e-72 277.7 384 43.0
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 2.4e-71 273.5 293 48.1
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 5.4e-71 272.3 370 42.2
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 2.3e-69 266.9 421 38.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 1.1e-66 258.1 367 40.6
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.8e-66 257.3 374 41.2
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 1.8e-66 257.3 367 39.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 1.2e-65 254.6 375 40.0
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 2.6e-65 253.4 368 40.5
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 7.6e-65 251.9 396 41.2
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.3e-64 251.1 378 39.9
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.2e-64 250.4 375 39.7
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 6.4e-64 248.8 366 38.3
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.4e-64 248.8 368 39.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 6.4e-64 248.8 407 36.9
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 4.1e-63 246.1 374 39.8
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.2e-62 244.6 365 41.4
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 2.7e-62 243.4 379 37.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.5e-62 243.0 438 37.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 7.8e-62 241.9 366 37.4
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-61 240.7 365 37.5
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.5e-60 237.7 378 38.9
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 1.9e-60 237.3 379 39.1
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 3.3e-60 236.5 378 38.9
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 5.6e-60 235.7 384 38.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 5.6e-60 235.7 380 38.2
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 7.3e-60 235.3 373 38.6
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 1.2e-59 234.6 368 39.4
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 1.2e-59 234.6 299 47.2
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.2e-59 234.6 379 39.1
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.1e-59 233.8 350 41.4
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 6.2e-59 232.3 382 37.7
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 6.2e-59 232.3 195 54.9
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 8.1e-59 231.9 378 38.4
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 1.1e-58 231.5 372 37.1
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 5.2e-58 229.2 380 38.7
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.9e-58 228.4 373 39.1
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.2e-57 228.0 193 53.9
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.5e-57 227.6 376 36.7
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.6e-57 226.9 179 58.1
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 4.4e-57 226.1 368 37.8
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.2e-56 223.8 362 37.6
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 2.9e-56 223.4 376 38.6
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 4.9e-56 222.6 182 56.6
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 8.4e-56 221.9 366 37.2
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 8.4e-56 221.9 363 38.6
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 9.3e-55 218.4 377 36.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.6e-54 217.6 367 35.4
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 6.0e-54 215.7 364 37.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-53 214.2 378 35.7
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 5.1e-53 212.6 368 36.7
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 5.1e-53 212.6 424 31.6
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 6.6e-53 212.2 374 35.3
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 6.6e-53 212.2 226 48.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 4.3e-52 209.5 318 40.6
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 5.6e-52 209.1 360 36.1
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 7.3e-52 208.8 420 32.1
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.8e-51 206.8 173 52.6
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 1.4e-50 204.5 348 36.2
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 4.0e-50 203.0 440 33.2
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 5.3e-50 202.6 364 34.1
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 2.0e-49 200.7 362 35.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.3e-48 198.0 385 34.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.2e-48 197.2 172 50.6
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.2e-46 191.4 454 30.6
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 3.5e-46 189.9 374 35.6
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-45 188.0 401 31.7
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.1e-45 186.0 326 36.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 4.3e-44 183.0 473 30.7
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.3e-43 181.4 194 45.4
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.3e-43 181.4 328 33.5
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 2.8e-43 180.3 450 30.2
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 2.4e-42 177.2 193 45.6
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 4.0e-42 176.4 195 42.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 2.6e-41 173.7 370 34.6
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 7.6e-41 172.2 357 31.4
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.3e-40 171.4 322 32.9
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.9e-40 170.2 191 42.4
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 3.8e-40 169.9 358 31.8
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.2e-38 164.9 188 44.1
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.6e-38 164.5 360 30.8
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 2.7e-38 163.7 363 31.1
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 2.7e-38 163.7 363 34.4
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 7.9e-38 162.2 361 29.6
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.3e-37 160.6 297 36.0
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 3.9e-37 159.8 189 40.7
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.1e-37 159.5 382 31.4
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 6.7e-37 159.1 169 45.6
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 1.5e-36 157.9 256 35.2
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.5e-36 157.9 188 42.0
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 7.4e-36 155.6 362 29.3
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.6e-35 154.5 212 42.0
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.7e-35 153.3 364 30.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 4.8e-35 152.9 371 32.1
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.1e-34 151.8 190 42.6
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 1.8e-34 151.0 350 30.0
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 3.1e-34 150.2 151 46.4
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.1e-34 150.2 363 28.1
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.0e-34 149.8 164 43.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 1.5e-33 147.9 187 40.6
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 2.0e-33 147.5 190 38.9
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 3.4e-33 146.7 178 43.3
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 3.4e-33 146.7 178 43.3
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.5e-33 146.4 365 29.0
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 4.9e-32 142.9 194 42.8
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 4.9e-32 142.9 194 42.8
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 6.5e-32 142.5 178 42.1
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.5e-31 140.6 173 42.8
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 3.2e-31 140.2 191 43.5
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 4.2e-31 139.8 175 40.0
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 5.5e-31 139.4 362 28.5
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.1e-31 139.0 361 28.8
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 2.7e-30 137.1 195 40.0
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.5e-30 136.7 198 41.9
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 4.6e-30 136.3 196 41.8
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.0e-29 133.7 97 57.7
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.1e-29 132.9 184 40.2
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.5e-28 131.3 343 29.2
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 2.8e-27 127.1 271 32.8
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.1e-26 123.6 115 47.0
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 5.3e-26 122.9 99 52.5
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 1.2e-25 121.7 121 45.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 2.0e-25 120.9 398 24.9
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.3e-24 118.2 178 35.4
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 3.8e-24 116.7 187 32.1
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.1e-23 115.2 169 36.7
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.5e-23 112.8 300 27.3
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 1.6e-22 111.3 114 44.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 3.5e-22 110.2 147 38.1
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 3.5e-22 110.2 147 38.1
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 6.1e-22 109.4 410 25.9
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.8e-21 107.8 117 44.4
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.0e-21 107.1 241 34.4
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 3.3e-20 103.6 321 26.5
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 6.3e-19 99.4 141 38.3
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 1.4e-18 98.2 130 36.9
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 5.3e-18 96.3 319 26.3
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 7.7e-17 92.4 87 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 5.0e-16 89.7 179 30.2
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-15 87.8 247 32.8
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 5.5e-15 86.3 240 31.7
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.6e-14 84.7 130 33.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.6e-14 83.2 151 34.4
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 2.0e-09 67.8 51 56.9
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 7.7e-09 65.9 53 56.6
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.9e-08 63.9 67 35.8
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 3.8e-08 63.5 198 33.3
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 5.0e-08 63.2 37 67.6
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.1e-07 62.0 110 34.5
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 7.2e-07 59.3 96 39.6
HPP92_016088 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.2e-06 58.5 53 47.2
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 7.9e-06 55.8 158 31.0


User provided reference genes

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