Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 3.6e-243 845.1 653 100.0
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 8.7e-149 531.6 608 73.7
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 1.9e-148 530.4 554 77.3
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 6.6e-88 329.3 578 46.9
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.2e-57 228.8 337 51.0
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.6e-57 226.9 348 46.3
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.3e-56 224.6 342 47.7
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.8e-53 214.9 338 49.1
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.4e-53 214.5 336 50.0
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 5.8e-52 209.9 331 50.5
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 2.2e-51 208.0 331 50.5
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 3.8e-51 207.2 352 45.7
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 2.7e-49 201.1 324 45.4
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 2.4e-45 188.0 330 45.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.7e-43 181.8 346 45.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 3.8e-43 180.6 344 43.9
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 8.4e-43 179.5 340 47.4
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.1e-42 179.1 343 46.4
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.9e-42 178.3 353 44.2
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 5.5e-42 176.8 366 42.9
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.1e-41 174.9 349 45.0
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 6.0e-41 173.3 337 45.7
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 1.0e-40 172.6 343 45.8
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.3e-40 171.4 354 41.5
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 3.9e-40 170.6 342 44.7
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 8.7e-40 169.5 340 44.7
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 1.9e-39 168.3 337 45.4
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 7.4e-39 166.4 352 34.9
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 9.6e-39 166.0 357 38.1
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.3e-38 165.6 333 40.5
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.8e-38 163.7 334 45.2
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.8e-38 163.7 335 45.7
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 8.1e-38 162.9 333 43.8
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.1e-37 162.5 337 43.3
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.4e-37 162.2 329 42.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.4e-37 161.4 244 44.7
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 9.0e-37 159.5 344 42.7
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 1.2e-36 159.1 339 42.8
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.5e-36 158.7 346 35.3
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 5.8e-36 156.8 329 43.8
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 7.6e-36 156.4 278 47.1
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 7.6e-36 156.4 308 42.5
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.3e-35 155.6 329 39.2
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.3e-35 155.6 330 40.9
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.3e-35 155.6 343 40.5
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 2.9e-35 154.5 326 39.0
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 8.4e-35 152.9 342 44.4
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.1e-34 152.5 339 41.9
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.5e-34 151.4 212 42.5
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 2.5e-34 151.4 348 42.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 5.5e-34 150.2 341 43.4
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 7.1e-34 149.8 336 42.9
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 1.2e-33 149.1 349 40.4
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 1.6e-33 148.7 349 40.1
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.6e-33 147.1 345 43.5
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 6.0e-33 146.7 328 41.5
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 6.0e-33 146.7 329 43.5
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.9e-31 141.7 335 43.0
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 5.7e-31 140.2 323 41.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 2.1e-30 138.3 342 39.5
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 8.2e-30 136.3 344 41.0
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.4e-29 135.6 343 40.5
Solyc03g005710.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 1.8e-29 135.2 90 75.6
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 1.8e-29 135.2 205 51.7
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.4e-29 134.8 312 43.3
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 9.0e-29 132.9 351 40.7
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 1.2e-28 132.5 242 48.3
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 1.2e-28 132.5 214 40.7
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.7e-27 128.6 340 39.7
PGR031G1888 Punica granatum HOM05D006910 ORTHO05D008937 8.4e-27 126.3 341 39.9
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 1.9e-26 125.2 331 38.4
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 4.2e-26 124.0 335 38.8
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 6.1e-25 120.2 337 39.5
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 2.3e-24 118.2 320 41.2
unitig_748.g8295 Utricularia gibba HOM05D006910 ORTHO05D008937 3.9e-24 117.5 338 37.6
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 5.1e-24 117.1 303 39.9
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.9e-23 115.2 318 29.6
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.5e-23 114.8 353 31.7
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 3.3e-23 114.4 321 31.2
Carub.0001s0374 Capsella rubella HOM05D006910 ORTHO05D008937 4.3e-23 114.0 328 31.1
Lsat_1_v5_gn_1_75580 Lactuca sativa HOM05D006910 ORTHO05D008937 5.7e-23 113.6 321 38.6
Lsat_1_v5_gn_6_66101 Lactuca sativa HOM05D006910 ORTHO05D008937 9.7e-23 112.8 192 41.7
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 1.3e-22 112.5 321 31.2
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 3.7e-22 110.9 318 29.6
Sp1g03360 Schrenkiella parvula HOM05D006910 ORTHO05D008937 1.4e-21 109.0 328 29.9
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 3.1e-21 107.8 122 47.5
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 9.0e-21 106.3 214 37.4
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 9.0e-21 106.3 339 29.8
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.5e-20 105.5 74 64.9
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 2.6e-20 104.8 213 39.0
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 1.3e-19 102.4 192 51.0
THA.LOC104801064 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.3e-19 102.4 144 41.0
Thhalv10008199m.g Eutrema salsugineum HOM05D006910 ORTHO05D008937 2.2e-19 101.7 226 34.5
CARHR003870 Cardamine hirsuta HOM05D006910 ORTHO05D008937 1.1e-18 99.4 337 27.9
THA.LOC104826095 Tarenaya hassleriana HOM05D006910 ORTHO05D008937 1.9e-18 98.6 155 42.6
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 4.2e-18 97.4 342 28.7
ClCG05G003960 Citrullus lanatus HOM05D006910 ORTHO05D008937 1.2e-17 95.9 332 27.7
CsaV3_3G011640 Cucumis sativus L. HOM05D006910 ORTHO05D008937 3.6e-17 94.4 329 28.9
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 3.6e-17 94.4 206 35.0
Sed0015418 Sechium edule HOM05D006910 ORTHO05D008937 1.4e-16 92.4 321 35.5
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.8e-16 92.0 192 39.6
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 1.8e-16 92.0 167 52.1
MELO3C006372.2 Cucumis melo HOM05D006910 ORTHO05D008937 3.0e-16 91.3 337 34.4
Ca_09799_v3 Cicer arietinum L. HOM05D006910 ORTHO05D008937 5.1e-16 90.5 336 34.5
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 6.7e-16 90.1 122 43.4
TPR.G18548 Trifolium pratense HOM05D006910 ORTHO05D008937 8.8e-16 89.7 335 34.3
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 2.2e-14 85.1 166 36.1
BolC8t52749H Brassica oleracea HOM05D006910 ORTHO05D008937 4.1e-13 80.9 167 34.1
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.5e-12 79.0 173 39.9
C08p52150 Brassica napus HOM05D006910 ORTHO05D008937 2.6e-12 78.2 167 32.3
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 3.4e-12 77.8 179 32.4
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 4.5e-12 77.4 336 34.5
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 7.7e-12 76.6 119 42.9
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 2.2e-11 75.1 312 35.6
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 2.9e-11 74.7 81 44.4
Duzib150G1231 Durio zibethinus HOM05D001903 ORTHO05D001847 1.9e-10 72.0 128 37.5
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 2.5e-10 71.6 145 40.7
Nitab4.5_0000209g0150 Nicotiana tabacum HOM05D001903 ORTHO05D001847 2.5e-10 71.6 85 44.7
Hund26517 Selenicereus undatus HOM05D001903 ORTHO05D001847 3.2e-10 71.2 92 40.2
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 4.2e-10 70.9 46 65.2
Rhsim03G0248500 Rhododendron simsii HOM05D001903 ORTHO05D001847 9.4e-10 69.7 74 47.3
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.6e-09 68.9 163 33.1
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.1e-09 68.6 171 33.9
Os04g0496700 Oryza sativa ssp. japonica HOM05D001903 ORTHO05D001847 3.6e-09 67.8 125 33.6
Aa31LG2G18260 Aethionema arabicum HOM05D001903 ORTHO05D001847 4.7e-09 67.4 114 38.6
PGR044G1481 Punica granatum HOM05D001903 ORTHO05D001847 4.7e-09 67.4 75 45.3
EL10Ac2g04227 Beta vulgaris HOM05D001903 ORTHO05D001847 6.1e-09 67.0 76 40.8
PGR044G1754 Punica granatum HOM05D001903 ORTHO05D001847 1.0e-08 66.2 75 44.0
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.4e-08 65.9 188 35.6
Aa31LG4G420 Aethionema arabicum HOM05D001903 ORTHO05D001847 2.3e-08 65.1 104 40.4
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.3e-08 65.1 44 59.1
Cfa010644 Carpinus fangiana HOM05D001903 ORTHO05D001847 2.3e-08 65.1 72 43.1
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 3.0e-08 64.7 96 36.5
SMO118G0200 Selaginella moellendorffii HOM05D006910 ORTHO05D008937 3.9e-08 64.3 62 48.4
Sabra06G0198700 Salix brachista HOM05D001903 ORTHO05D001847 5.1e-08 63.9 82 40.2
A01p06030 Brassica napus HOM05D001903 ORTHO05D001847 6.7e-08 63.5 72 45.8
BraA01t00568Z Brassica rapa HOM05D001903 ORTHO05D001847 6.7e-08 63.5 72 45.8
BcaC09g52017 Brassica carinata HOM05D001903 ORTHO05D001847 8.8e-08 63.2 72 45.8
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 8.8e-08 63.2 83 43.4
BolC1t00658H Brassica oleracea HOM05D001903 ORTHO05D001847 1.1e-07 62.8 72 45.8
AL2G41400 Arabidopsis lyrata HOM05D001903 ORTHO05D001847 1.5e-07 62.4 70 44.3
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.5e-07 62.4 176 33.5
C01p06630 Brassica napus HOM05D001903 ORTHO05D001847 2.0e-07 62.0 72 45.8
Thhalv10026052m.g Eutrema salsugineum HOM05D001903 ORTHO05D001847 2.6e-07 61.6 72 44.4
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.3e-07 61.2 45 62.2
Potri.006G254300 Populus trichocarpa HOM05D001903 ORTHO05D001847 3.3e-07 61.2 69 42.0
BcaC03g16002 Brassica carinata HOM05D001903 ORTHO05D001847 7.4e-07 60.1 117 36.8
BolC2t09769H Brassica oleracea HOM05D001903 ORTHO05D001847 7.4e-07 60.1 117 35.9
Sp7g30100 Schrenkiella parvula HOM05D001903 ORTHO05D001847 7.4e-07 60.1 72 43.1
GSVIVG01028428001 Vitis vinifera HOM05D006910 ORTHO05D008937 7.4e-07 60.1 47 66.0
Gorai.010G137200 Gossypium raimondii HOM05D001903 ORTHO05D001847 1.3e-06 59.3 79 41.8
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 1.3e-06 59.3 169 32.5
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 1.7e-06 58.9 98 42.9
AUR62012392 Chenopodium quinoa HOM05D001903 ORTHO05D001847 2.8e-06 58.2 60 45.0
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 2.8e-06 58.2 45 57.8
A02p23820 Brassica napus HOM05D001903 ORTHO05D001847 3.7e-06 57.8 113 35.4
BraA02t07373Z Brassica rapa HOM05D001903 ORTHO05D001847 3.7e-06 57.8 113 35.4
BcaB05g25297 Brassica carinata HOM05D001903 ORTHO05D001847 4.8e-06 57.4 68 44.1
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 4.8e-06 57.4 100 42.0
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 6.3e-06 57.0 44 52.3
COL.COLO4_18856 Corchorus olitorius HOM05D001903 ORTHO05D001847 8.2e-06 56.6 44 59.1


User provided reference genes

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