Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 2305.8 1194 100.0
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 2011.1 1177 89.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 2010.0 1182 88.7
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1877.8 1173 84.6
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1803.5 1155 82.9
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1718.7 1176 78.7
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1429.1 1190 65.6
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1395.6 1174 64.3
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1394.0 1180 63.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1365.1 1187 62.4
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1358.2 1183 62.3
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1351.3 1042 65.0
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1333.9 1164 61.6
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1329.3 1139 62.9
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1320.4 1037 64.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1318.9 1167 60.0
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1303.9 1178 60.4
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1299.3 1157 61.2
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1296.2 1200 59.8
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1294.6 1145 59.9
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1292.3 1171 60.1
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1290.4 1179 60.5
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1290.0 1174 59.6
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1290.0 1170 60.3
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1280.0 1228 57.3
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1276.2 1164 58.7
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1273.8 1188 58.8
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1268.4 1182 59.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1264.2 1217 56.2
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1253.8 1163 58.3
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1253.8 1186 58.0
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1253.4 1182 58.4
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1253.0 1164 58.8
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1252.3 1186 58.6
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1248.4 1172 58.2
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1248.0 1176 58.1
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1247.3 1188 58.0
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1244.2 1186 57.8
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1243.8 1167 57.6
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1243.4 1173 58.6
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1238.4 1173 57.7
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1236.9 1183 58.6
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1230.3 1194 57.6
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1228.0 1180 57.5
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1227.2 1175 56.2
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1226.1 1129 60.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1223.4 1194 57.4
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1220.7 1184 57.0
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1218.0 1169 58.4
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1216.4 1178 57.6
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1215.7 1176 56.6
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1211.1 1168 57.3
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1206.8 1184 57.9
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1201.8 1161 56.2
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1201.0 1224 55.0
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1201.0 1172 57.3
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1191.0 948 63.7
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1187.9 1180 55.1
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1187.2 1194 55.6
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1186.4 1072 61.8
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1176.8 1181 55.9
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1171.4 1098 58.9
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1157.5 1205 54.3
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1145.6 1189 53.0
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1140.2 1143 56.0
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1129.4 1161 53.6
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1129.0 1352 51.2
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1127.9 1162 52.7
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1120.5 1162 52.6
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1119.4 1163 55.5
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1119.4 1163 55.5
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1115.5 1163 53.9
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1112.4 1142 53.8
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1100.1 1174 53.9
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1097.0 1156 52.9
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1089.3 1655 42.4
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1088.9 1164 52.1
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1081.2 1157 52.5
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 8.2e-312 1074.7 1042 53.5
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 8.2e-312 1074.7 1148 53.9
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 8.2e-312 1074.3 1000 56.8
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 2.4e-301 1039.3 1160 50.4
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 3.4e-300 1035.4 1169 49.9
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 2.7e-297 1025.8 1186 48.8
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.9e-290 1003.0 1162 48.5
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 2.8e-278 962.6 1256 45.9
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 3.5e-265 919.1 989 51.4
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 6.7e-248 861.7 720 59.6
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 1.3e-246 857.4 1058 45.3
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 1.4e-232 810.8 734 56.9
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 6.3e-222 775.4 1060 44.1
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.8e-219 766.1 841 53.4
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 5.8e-207 725.7 637 58.6
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.6e-193 681.0 668 55.2
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 2.1e-193 680.6 660 55.5
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 4.7e-193 679.5 1178 39.4
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 5.4e-189 666.0 784 49.7
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 6.2e-185 652.5 966 39.2
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 2.1e-177 627.5 1140 36.9
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 6.2e-177 625.9 666 52.1
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 3.6e-169 600.1 1220 36.4
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 8.7e-163 578.9 1203 36.0
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 1.4e-152 545.0 492 59.3
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 2.9e-134 484.2 1248 30.4
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 1.6e-108 398.7 428 52.6
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 4.4e-98 364.0 425 53.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 9.9e-58 229.9 275 42.2
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 4.9e-57 227.6 179 60.3
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 8.7e-38 163.7 94 84.0
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 5.0e-33 147.9 120 58.3
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 5.0e-25 121.3 298 29.5
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 4.2e-16 91.7 70 64.3
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 3.1e-11 75.5 157 33.8
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 3.5e-10 72.0 95 37.9
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 1.0e-09 70.5 47 68.1
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 1.7e-09 69.7 60 63.3
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 3.8e-09 68.6 81 48.1
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 5.0e-09 68.2 36 86.1
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 5.5e-08 64.7 36 77.8
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 7.2e-08 64.3 36 72.2
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 2.7e-07 62.4 42 66.7
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 1.0e-06 60.5 64 42.2


User provided reference genes

Program Settings