Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 0.0e+00 1237.6 633 100.0
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 0.0e+00 1100.5 621 90.2
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.3e-293 1012.7 621 84.7
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 2.1e-293 1011.9 624 84.5
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.5e-286 988.4 618 82.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 3.3e-278 961.4 621 79.7
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.0e-276 953.4 617 80.2
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.2e-219 766.9 618 63.4
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 7.2e-217 757.7 619 64.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 3.6e-216 755.4 621 63.9
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 2.6e-214 749.2 621 63.6
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 3.2e-212 742.3 643 62.5
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 9.2e-212 740.7 620 63.7
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 2.5e-209 732.6 619 62.4
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.5e-209 732.6 619 62.0
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 7.3e-209 731.1 621 61.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 3.6e-208 728.8 620 62.1
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 4.0e-207 725.3 623 62.1
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 8.9e-207 724.2 620 61.9
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 2.4e-204 716.1 664 59.2
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 3.2e-204 715.7 621 61.5
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 2.0e-203 713.0 624 59.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.3e-202 710.3 616 60.2
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.9e-202 708.8 620 60.2
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.5e-201 706.1 630 59.2
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 7.3e-201 704.5 621 60.4
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 2.6e-198 696.0 618 59.9
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 3.7e-197 692.2 620 58.4
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 8.3e-197 691.0 626 58.8
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.9e-196 689.9 630 58.3
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.4e-196 689.5 617 59.3
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.2e-196 689.1 626 58.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 4.1e-196 688.7 615 58.4
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 5.4e-196 688.3 626 58.6
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.2e-195 687.2 619 58.3
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 5.6e-193 678.3 621 58.5
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 8.1e-192 674.5 593 61.2
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.1e-191 672.5 620 58.4
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 5.8e-190 668.3 621 57.8
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.8e-190 668.3 616 58.4
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 1.4e-188 663.7 618 57.8
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 3.2e-188 662.5 617 57.2
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 5.4e-188 661.8 618 56.6
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.3e-186 657.1 617 56.2
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 9.6e-185 651.0 624 56.1
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.4e-183 647.1 619 55.7
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.4e-183 647.1 621 57.8
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 3.1e-183 646.0 620 55.3
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 4.0e-183 645.6 616 55.4
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 5.8e-182 641.7 618 56.1
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 1.7e-181 640.2 620 56.1
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 1.7e-181 640.2 628 55.3
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 2.2e-181 639.8 623 55.7
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.4e-180 635.2 618 56.1
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.1e-179 633.3 620 55.0
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 4.6e-179 632.1 629 54.7
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 6.0e-179 631.7 624 54.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 2.3e-178 629.8 617 53.6
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.0e-178 629.4 624 54.8
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.1e-178 628.6 618 55.7
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 9.6e-177 624.4 617 54.5
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 1.3e-176 624.0 621 54.4
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 6.2e-176 621.7 590 58.1
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.4e-175 620.5 478 65.9
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.0e-174 616.7 620 53.7
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 2.4e-172 609.8 618 55.2
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 5.4e-172 608.6 619 54.3
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.2e-171 607.4 623 53.3
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.1e-171 606.7 595 56.0
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 6.0e-171 605.1 624 52.6
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 4.3e-169 599.0 619 53.5
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.6e-168 595.9 618 53.1
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 8.1e-168 594.7 619 54.1
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.1e-167 594.3 618 53.1
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.1e-167 594.3 618 52.8
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.0e-167 592.4 616 52.3
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 9.0e-167 591.3 616 52.1
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.4e-166 589.3 618 52.3
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 5.5e-164 582.0 604 54.6
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 7.1e-164 581.6 618 52.4
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 7.1e-164 581.6 598 55.0
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 6.7e-162 575.1 629 53.4
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 4.8e-160 568.9 584 54.1
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.3e-157 560.8 597 53.1
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.2e-157 560.1 616 49.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 7.1e-156 555.1 564 53.5
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 9.0e-151 538.1 634 47.8
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 9.0e-151 538.1 622 49.8
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.0e-149 534.6 638 49.4
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.1e-143 514.6 632 48.4
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 4.1e-143 512.7 610 49.5
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 9.4e-140 501.5 540 51.3
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.1e-139 500.4 610 48.5
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 4.1e-135 486.1 598 47.3
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 1.1e-129 468.0 461 55.3
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 7.5e-113 412.1 641 41.7
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 5.0e-109 399.4 514 45.3
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 3.3e-100 370.2 647 40.0
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.7e-99 366.3 295 61.7
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.5e-92 344.7 347 51.6
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 7.3e-84 315.8 273 57.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.4e-63 247.7 258 52.3
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 1.4e-50 205.3 253 51.0
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.9e-36 158.3 107 71.0
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-35 154.8 97 75.3
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.3e-32 145.6 97 71.1
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.8e-32 144.1 93 72.0
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.5e-24 116.7 77 70.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.5e-23 114.8 77 70.1
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 2.1e-22 111.7 471 27.4
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.1e-10 72.8 278 23.4
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 9.1e-10 69.7 62 53.2
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 7.2e-07 60.1 154 31.2


User provided reference genes

Program Settings