Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 2.1e-230 802.0 403 100.0
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 3.1e-205 718.4 408 89.5
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.1e-205 718.4 408 89.5
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 3.0e-200 701.8 403 87.3
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 2.5e-199 698.7 408 87.5
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 7.4e-199 697.2 408 87.0
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 1.3e-182 643.3 422 78.7
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 6.8e-160 567.8 388 74.5
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.5e-159 566.6 395 72.7
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 1.3e-158 563.5 340 81.8
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 5.0e-155 551.6 385 70.6
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.9e-154 549.7 397 70.0
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 2.5e-154 549.3 398 70.1
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 3.3e-154 548.9 395 71.6
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 7.3e-154 547.7 400 69.8
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 9.5e-154 547.4 347 79.0
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 3.6e-153 545.4 340 80.0
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 8.0e-153 544.3 389 71.0
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 1.0e-152 543.9 395 71.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 1.0e-152 543.9 400 69.2
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.8e-152 543.1 395 70.1
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 3.0e-152 542.3 344 79.1
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.0e-152 542.3 395 69.9
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 3.0e-152 542.3 379 71.0
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 4.0e-152 542.0 341 79.8
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 4.0e-152 542.0 343 79.6
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 5.2e-152 541.6 406 69.7
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 1.2e-151 540.4 362 75.7
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 3.4e-151 538.9 398 70.4
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 3.4e-151 538.9 400 69.5
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 4.9e-150 535.0 392 70.4
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 8.3e-150 534.3 303 83.5
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 8.3e-150 534.3 343 78.1
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 1.1e-149 533.9 388 70.6
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 1.4e-149 533.5 353 75.6
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 3.2e-149 532.3 395 68.9
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 3.2e-149 532.3 348 74.4
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.1e-149 531.9 395 68.6
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 5.4e-149 531.6 348 76.4
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 7.0e-149 531.2 340 77.4
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 9.2e-149 530.8 343 77.8
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 4.6e-148 528.5 349 75.9
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 4.6e-148 528.5 397 68.3
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 5.9e-148 528.1 350 76.3
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.3e-147 526.9 344 76.2
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 1.7e-147 526.6 356 74.2
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 2.3e-147 526.2 392 69.6
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 6.6e-147 524.6 399 68.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 5.6e-146 521.5 399 68.7
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 5.6e-146 521.5 338 77.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 7.3e-146 521.2 420 65.0
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 1.2e-145 520.4 424 64.2
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 1.6e-145 520.0 389 68.9
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.1e-145 519.6 287 86.4
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.1e-145 519.6 287 87.1
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.1e-145 519.6 287 86.8
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 2.1e-145 519.6 287 87.1
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 2.1e-145 519.6 369 71.5
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 4.7e-145 518.5 340 75.9
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 6.2e-145 518.1 288 86.1
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 8.0e-145 517.7 320 78.1
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 1.4e-144 516.9 403 67.2
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.4e-144 516.9 403 68.2
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.8e-144 516.5 293 82.3
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 4.0e-144 515.4 411 66.2
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 5.2e-144 515.0 347 74.9
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 6.8e-144 514.6 312 79.5
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 6.8e-144 514.6 342 76.0
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 2.0e-143 513.1 341 73.9
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 3.4e-143 512.3 363 71.9
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 1.3e-142 510.4 396 66.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 2.2e-142 509.6 315 79.0
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 3.7e-142 508.8 290 81.4
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 6.4e-142 508.1 403 66.5
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.1e-141 507.3 411 65.2
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 1.9e-141 506.5 348 72.1
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 2.4e-141 506.1 326 76.4
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 3.2e-141 505.8 322 74.8
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 7.0e-141 504.6 356 71.3
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 2.0e-140 503.1 392 67.3
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 2.7e-140 502.7 312 78.2
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 4.6e-140 501.9 337 74.8
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 4.6e-140 501.9 332 72.9
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 5.0e-139 498.4 355 70.1
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 8.6e-139 497.7 332 72.0
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 1.9e-138 496.5 346 70.8
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 4.3e-138 495.4 303 75.6
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 2.8e-137 492.7 313 75.4
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 3.6e-137 492.3 320 74.4
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 1.8e-136 490.0 353 68.6
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 4.0e-136 488.8 360 68.3
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 4.4e-135 485.3 354 68.4
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 4.4e-135 485.3 354 68.4
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 5.8e-135 485.0 359 68.2
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 5.8e-135 485.0 353 68.3
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 7.5e-135 484.6 385 64.7
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 7.5e-135 484.6 353 68.3
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.7e-134 483.4 349 70.2
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 1.4e-133 480.3 347 67.1
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.9e-133 479.9 384 67.4
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 1.2e-132 477.2 265 82.3
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 2.1e-132 476.5 436 59.4
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 2.7e-132 476.1 347 67.4
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 4.6e-132 475.3 402 63.7
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 3.0e-131 472.6 298 73.2
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 4.0e-128 462.2 302 73.2
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 5.8e-127 458.4 394 63.2
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 2.9e-126 456.1 334 70.7
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 1.9e-125 453.4 281 77.2
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 6.6e-123 444.9 299 71.6
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.1e-122 444.1 314 69.1
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.6e-121 440.3 387 61.5
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 6.6e-115 418.3 348 59.8
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 7.3e-114 414.8 280 68.2
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 2.4e-109 399.8 296 62.8
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 9.3e-109 397.9 225 86.2
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 7.9e-108 394.8 274 65.7
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 1.3e-107 394.0 433 54.0
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 5.6e-106 388.7 217 83.4
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 2.8e-105 386.3 398 56.0
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 5.3e-104 382.1 327 58.1
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 8.7e-99 364.8 401 53.1
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 2.1e-92 343.6 181 87.3
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 3.0e-91 339.7 390 51.0
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 6.3e-73 278.9 145 84.1
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 2.4e-72 276.9 145 86.2
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 8.2e-65 251.9 260 56.2
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 8.0e-44 182.2 160 63.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 3.0e-43 180.3 173 55.5
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.4e-40 171.4 192 49.0
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 3.3e-37 160.2 120 66.7
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.4e-35 154.8 94 68.1
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.0e-35 153.7 135 64.4
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 2.4e-32 144.1 161 49.1
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 3.9e-30 136.7 84 76.2
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 5.0e-30 136.3 139 59.0
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 7.3e-29 132.5 64 92.2
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.8e-27 125.9 63 85.7
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 4.6e-23 113.2 66 75.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 6.6e-22 109.4 72 76.4
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 7.5e-18 95.9 71 66.2
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.4e-16 91.7 66 68.2
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 6.0e-15 86.3 66 62.1
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 3.0e-06 57.4 48 56.2


User provided reference genes

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