Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 7.1e-54 213.8 115 100.0
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 6.4e-47 190.7 116 91.4
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 9.3e-46 186.8 116 89.7
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 6.0e-45 184.1 116 88.8
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-26 123.2 101 70.3
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 3.7e-26 121.7 101 68.3
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 4.8e-26 121.3 102 73.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.1e-25 118.2 101 68.3
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.5e-24 116.3 103 67.0
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 2.6e-24 115.5 101 71.3
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 5.9e-24 114.4 101 70.3
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 5.0e-23 111.3 102 63.7
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.6e-21 106.3 101 61.4
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.0e-20 103.6 97 64.9
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.1e-20 101.3 101 59.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 8.7e-20 100.5 101 59.4
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-19 100.1 101 58.4
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 3.3e-19 98.6 104 56.7
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.3e-19 98.6 101 59.4
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 3.3e-19 98.6 87 64.4
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.3e-19 98.2 87 64.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.7e-19 97.8 101 58.4
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 5.7e-19 97.8 105 59.0
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 9.7e-19 97.1 102 57.8
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.7e-19 97.1 94 61.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.6e-18 96.3 109 55.0
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.8e-18 95.5 102 57.8
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 4.8e-18 94.7 98 60.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.8e-18 94.7 105 55.2
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 6.3e-18 94.4 101 56.4
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 8.2e-18 94.0 101 59.4
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.8e-17 92.8 99 62.6
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.1e-17 91.7 97 57.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 4.1e-17 91.7 91 61.5
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 4.1e-17 91.7 101 56.4
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.9e-17 90.9 102 55.9
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.5e-16 89.7 102 53.9
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.6e-16 89.0 84 59.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.7e-16 87.4 88 59.1
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 7.7e-16 87.4 96 59.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.0e-15 87.0 99 54.5
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.2e-15 85.9 93 54.8
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.9e-15 85.5 100 55.0
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.8e-15 85.1 81 60.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.1e-14 83.6 100 53.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-14 82.8 99 53.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.9e-14 82.8 107 50.5
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 2.5e-14 82.4 98 55.1
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.5e-14 82.4 107 50.5
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.5e-14 82.4 107 50.5
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.2e-14 82.0 107 50.5
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 3.2e-14 82.0 81 58.0
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.2e-14 82.0 94 57.4
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.2e-14 81.6 94 57.4
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 5.5e-14 81.3 93 53.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.2e-13 80.1 101 51.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.7e-13 79.0 100 51.0
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 3.6e-13 78.6 107 50.5
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 3.6e-13 78.6 98 49.0
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 6.1e-13 77.8 94 56.4
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.0e-12 77.0 101 49.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.4e-12 76.6 107 47.7
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-12 76.3 94 52.1
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.3e-12 75.9 101 46.5
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.0e-12 75.5 101 46.5
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.9e-12 75.1 114 44.7
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 5.1e-12 74.7 107 47.7
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.1e-12 74.7 99 47.5
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.8e-12 73.9 93 50.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 89 55.1
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 4.3e-11 71.6 98 49.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 4.3e-11 71.6 73 53.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 5.7e-11 71.2 94 52.1
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 9.7e-11 70.5 90 51.1
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 9.7e-11 70.5 100 48.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.2e-10 69.3 81 53.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 3.7e-10 68.6 77 50.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 4.8e-10 68.2 96 50.0
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.8e-10 68.2 93 51.6
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 4.8e-10 68.2 102 48.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.8e-10 68.2 98 48.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 4.8e-10 68.2 102 52.0
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 6.3e-10 67.8 86 51.2
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 6.3e-10 67.8 97 49.5
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.1e-09 67.0 80 52.5
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.8e-09 66.2 77 50.6
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.4e-09 65.9 104 45.2
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 2.4e-09 65.9 93 49.5
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 3.1e-09 65.5 85 49.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 95 41.1
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-09 65.1 95 49.5
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-09 65.1 95 49.5
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.1e-09 65.1 101 43.6
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.3e-09 64.7 41 73.2
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 5.3e-09 64.7 92 50.0
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 5.3e-09 64.7 101 47.5
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 48.9
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 48.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 6.9e-09 64.3 93 50.5
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 6.9e-09 64.3 107 43.9
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 9.1e-09 63.9 94 44.7
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 9.1e-09 63.9 95 45.3
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-08 63.5 92 48.9
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 92 48.9
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-08 63.5 92 48.9
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 94 50.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.5e-08 63.2 103 48.5
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.0e-08 62.8 132 38.6
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.0e-08 62.8 111 45.0
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 2.6e-08 62.4 92 48.9
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 2.6e-08 62.4 94 50.0
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-08 62.4 85 48.2
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 92 52.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 94 48.9
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.4e-08 62.0 101 46.5
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.5e-08 61.6 77 49.4
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.5e-08 61.6 88 44.3
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.5e-08 61.6 78 51.3
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.5e-08 61.6 94 43.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 4.5e-08 61.6 101 45.5
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 5.9e-08 61.2 87 42.5
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 5.9e-08 61.2 66 53.0
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 5.9e-08 61.2 98 43.9
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 7.7e-08 60.8 94 48.9
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 7.7e-08 60.8 48 68.8
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 7.7e-08 60.8 91 46.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.0e-07 60.5 88 50.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.0e-07 60.5 106 44.3
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 92 50.0
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.3e-07 60.1 79 46.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-07 60.1 65 50.8
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 76 51.3
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 1.7e-07 59.7 69 49.3
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-07 59.7 50 58.0
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.7e-07 59.7 107 39.3
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 92 47.8
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.9e-07 58.9 82 47.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.0e-07 58.2 94 44.7
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.0e-07 58.2 97 42.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 6.5e-07 57.8 96 42.7
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 43.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 43.0
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 43.0
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 43.0
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 43.0
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 6.5e-07 57.8 69 47.8
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 8.5e-07 57.4 89 42.7
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 1.1e-06 57.0 92 40.2
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-06 56.6 42 71.4
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.4e-06 56.6 87 42.5
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.9e-06 56.2 94 43.6
Sc20g0006220 Simmondsia chinensis HOM05D003360 ORTHO05D003759 2.5e-06 55.8 55 56.4
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.5e-06 55.8 107 36.4
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 3.2e-06 55.5 41 68.3
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 3.2e-06 55.5 41 68.3
Nn6g34941 Nelumbo nucifera HOM05D003360 ORTHO05D003759 3.2e-06 55.5 71 45.1
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 4.2e-06 55.1 45 64.4
PSO384G1242 Papaver somniferum HOM05D003360 ORTHO05D003759 4.2e-06 55.1 58 50.0
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 5.5e-06 54.7 98 41.8
Potri.006G083201 Populus trichocarpa HOM05D003360 ORTHO05D003759 5.5e-06 54.7 68 47.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.2e-06 54.3 100 42.0
DCAR_013380 Daucus carota HOM05D003360 ORTHO05D003759 7.2e-06 54.3 46 63.0
MBI01_g47405_MAGBIO Magnolia biondii HOM05D003360 ORTHO05D003759 7.2e-06 54.3 50 56.0
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.2e-06 54.3 77 48.1
HPP92_000039 Vanilla planifolia HOM05D003360 ORTHO05D003759 7.2e-06 54.3 62 51.6
HPP92_012635 Vanilla planifolia HOM05D003360 ORTHO05D003759 7.2e-06 54.3 62 51.6
FvH4_6g18440 Fragaria vesca HOM05D003360 ORTHO05D003759 9.4e-06 53.9 46 60.9
FAN02G1444 Fragaria x ananassa HOM05D003360 ORTHO05D003759 9.4e-06 53.9 46 60.9
FAN05G2543 Fragaria x ananassa HOM05D003360 ORTHO05D003759 9.4e-06 53.9 46 60.9
FAN09G1364 Fragaria x ananassa HOM05D003360 ORTHO05D003759 9.4e-06 53.9 46 60.9
RcHm_v2.0_Chr3g0472971 Rosa chinensis HOM05D003360 ORTHO05D003759 9.4e-06 53.9 46 60.9


User provided reference genes

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