Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G63.2 Capsicum annuum HOM05D007884 ORTHO05D009968 2.6e-263 911.8 541 100.0
PGSC0003DMG400013578 Solanum tuberosum HOM05D007884 ORTHO05D009968 4.9e-198 694.9 550 80.5
Sopen07g021970 Solanum pennellii HOM05D007884 ORTHO05D009968 1.0e-182 644.0 542 77.9
Nitab4.5_0005550g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 1.7e-153 547.0 521 71.2
Nitab4.5_0006974g0020 Nicotiana tabacum HOM05D007884 ORTHO05D009968 5.0e-150 535.4 522 65.5
Hma1.2p1_0004F.1_g003780 Hydrangea macrophylla HOM05D007884 ORTHO05D009968 6.9e-75 285.8 381 57.2
CAN.G6574.1 Capsicum annuum HOM05D007884 ORTHO05D009968 2.0e-74 284.3 261 88.9
Dinv09394 Davidia involucrata HOM05D007884 ORTHO05D009968 5.8e-74 282.7 381 56.2
MSTRG.1590 Avicennia marina HOM05D007884 ORTHO05D009968 6.5e-73 279.3 395 53.7
Oeu023202.1 Olea europaea HOM05D007884 ORTHO05D009968 2.3e-70 270.8 389 58.9
Cc11_g04640 Coffea canephora HOM05D007884 ORTHO05D009968 5.7e-69 266.2 369 41.2
Lj9P699T19 Lonicera japonica HOM05D007884 ORTHO05D009968 9.7e-69 265.4 371 58.0
SGA_v2.0_scaffold118G32599 Striga asiatica HOM05D007884 ORTHO05D009968 6.9e-67 259.2 371 54.7
CiPaw.03G016000 Carya illinoinensis HOM05D007884 ORTHO05D009968 1.2e-66 258.5 368 54.3
Haze_13924 Corylus avellana HOM05D007884 ORTHO05D009968 5.9e-66 256.1 368 46.5
Sc26g0002320 Simmondsia chinensis HOM05D007884 ORTHO05D009968 2.7e-63 247.3 424 50.7
DCAR_014075 Daucus carota HOM05D007884 ORTHO05D009968 7.9e-63 245.7 370 52.2
QL09p002129 Quercus lobata HOM05D007884 ORTHO05D009968 3.0e-62 243.8 369 36.3
Migut.C01368 Erythranthe guttata HOM05D007884 ORTHO05D009968 5.1e-62 243.0 354 52.8
Cfa008093 Carpinus fangiana HOM05D007884 ORTHO05D009968 6.7e-62 242.7 368 36.7
Actinidia29389 Actinidia chinensis HOM05D007884 ORTHO05D009968 1.4e-59 235.0 355 54.9
Thecc.08G176500 Theobroma cacao HOM05D007884 ORTHO05D009968 3.1e-59 233.8 378 50.0
CSS0033652 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 6.9e-59 232.6 313 61.7
CSS0035845 Camellia sinensis var. sinensis HOM05D007884 ORTHO05D009968 6.9e-59 232.6 313 61.7
Gohir.A07G085300 Gossypium hirsutum HOM05D007884 ORTHO05D009968 7.7e-58 229.2 377 45.4
Aqoxy7G02021 Aquilegia oxysepala HOM05D007884 ORTHO05D009968 1.0e-57 228.8 375 47.5
TAR383G0946 Trochodendron aralioides HOM05D007884 ORTHO05D009968 5.0e-57 226.5 382 49.2
Gorai.001G097200 Gossypium raimondii HOM05D007884 ORTHO05D009968 8.5e-57 225.7 388 44.8
Solyc07g042330.2 Solanum lycopersicum HOM05D007884 ORTHO05D009968 1.9e-56 224.6 244 53.7
Gohir.D07G090700 Gossypium hirsutum HOM05D007884 ORTHO05D009968 4.2e-56 223.4 388 44.8
Duzib177G0356 Durio zibethinus HOM05D007884 ORTHO05D009968 9.4e-56 222.2 379 51.2
HanXRQChr17g0559001 Helianthus annuus HOM05D007884 ORTHO05D009968 7.9e-55 219.2 376 49.2
Prupe.1G544500 Prunus persica HOM05D007884 ORTHO05D009968 1.8e-54 218.0 368 40.2
AUR62022398 Chenopodium quinoa HOM05D007884 ORTHO05D009968 2.3e-54 217.6 384 50.3
Lsat_1_v5_gn_4_133080 Lactuca sativa HOM05D007884 ORTHO05D009968 8.8e-54 215.7 375 48.8
EL10Ac1g01640 Beta vulgaris HOM05D007884 ORTHO05D009968 1.1e-53 215.3 366 50.0
Potri.019G075900 Populus trichocarpa HOM05D007884 ORTHO05D009968 2.0e-53 214.5 367 35.1
COL.COLO4_22419 Corchorus olitorius HOM05D007884 ORTHO05D009968 2.6e-53 214.2 351 49.3
CANSAT25G3642 Cannabis sativa HOM05D007884 ORTHO05D009968 9.7e-53 212.2 359 40.7
ClCG10G005030 Citrullus lanatus HOM05D007884 ORTHO05D009968 1.3e-52 211.8 369 49.1
Ah.05g168770 Amaranthus hybridus HOM05D007884 ORTHO05D009968 1.8e-51 208.0 364 50.0
Lj2g0010779 Lotus japonicus HOM05D007884 ORTHO05D009968 2.4e-51 207.6 368 46.5
Eucgr.F02657 Eucalyptus grandis HOM05D007884 ORTHO05D009968 5.3e-51 206.5 364 53.3
Psat1g062080 Pisum sativum HOM05D007884 ORTHO05D009968 2.0e-50 204.5 371 48.0
CsaV3_4G033680 Cucumis sativus L. HOM05D007884 ORTHO05D009968 2.6e-50 204.1 402 45.0
PSO242G0004 Papaver somniferum HOM05D007884 ORTHO05D009968 3.4e-50 203.8 402 47.3
Sabra19G0086300 Salix brachista HOM05D007884 ORTHO05D009968 8.5e-49 199.1 518 33.2
Nn3g17503 Nelumbo nucifera HOM05D007884 ORTHO05D009968 2.5e-48 197.6 374 48.7
Ciclev10019950m.g Citrus clementina HOM05D007884 ORTHO05D009968 3.6e-47 193.7 368 49.5
MD08G1213200 Malus domestica HOM05D007884 ORTHO05D009968 4.7e-47 193.4 369 47.2
Medtr6g017035 Medicago truncatula HOM05D007884 ORTHO05D009968 4.7e-47 193.4 369 46.3
Nn4g26038 Nelumbo nucifera HOM05D007884 ORTHO05D009968 4.7e-47 193.4 371 48.2
Sed0007017 Sechium edule HOM05D007884 ORTHO05D009968 4.7e-47 193.4 376 33.2
PGR031G2984 Punica granatum HOM05D007884 ORTHO05D009968 8.0e-47 192.6 359 42.3
TWI75G0081 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 2.3e-46 191.0 394 48.5
VMungo1309G1853 Vigna mungo HOM05D007884 ORTHO05D009968 2.6e-45 187.6 368 46.7
Phvul.003G017800 Phaseolus vulgaris HOM05D007884 ORTHO05D009968 3.3e-45 187.2 368 45.9
MELO3C016698.2 Cucumis melo HOM05D007884 ORTHO05D009968 5.7e-45 186.4 330 46.1
Lalb_Chr02g0158331 Lupinus albus HOM05D007884 ORTHO05D009968 3.7e-44 183.7 367 48.5
TWI18G0215 Tripterygium wilfordii HOM05D007884 ORTHO05D009968 1.8e-43 181.4 347 34.0
Glyma.19G044700 Glycine max HOM05D007884 ORTHO05D009968 2.4e-43 181.0 369 45.8
HPP92_008446 Vanilla planifolia HOM05D007884 ORTHO05D009968 4.1e-43 180.3 370 48.4
MBI04_g00944_MAGBIO Magnolia biondii HOM05D007884 ORTHO05D009968 3.6e-39 167.2 205 39.0
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 2.3e-38 164.5 221 48.9
HPP92_008463 Vanilla planifolia HOM05D007884 ORTHO05D009968 1.5e-37 161.8 370 46.2
Ca_26346_v3 Cicer arietinum L. HOM05D007884 ORTHO05D009968 2.6e-37 161.0 272 33.5
TPR.G21024 Trifolium pratense HOM05D007884 ORTHO05D009968 4.4e-37 160.2 368 45.1
AUR62043537 Chenopodium quinoa HOM05D007884 ORTHO05D009968 2.2e-36 157.9 287 55.1
Cpa.g.sc21.77 Carica papaya HOM05D007884 ORTHO05D009968 3.7e-36 157.1 274 52.2
Manes.18G118701 Manihot esculenta HOM05D007884 ORTHO05D009968 2.2e-33 147.9 284 49.6
ECA232G0955 Erigeron canadensis HOM05D007884 ORTHO05D009968 5.5e-32 143.3 287 50.9
Zm00001eb001440 Zea mays HOM05D007884 ORTHO05D009968 2.1e-31 141.4 358 27.7
CDE04G2395 Ceratophyllum demersum HOM05D007884 ORTHO05D009968 1.4e-30 138.7 257 56.0
ATR0716G085 Amborella trichopoda HOM05D007884 ORTHO05D009968 1.8e-30 138.3 344 48.8
Atru.chr13.2470 Acer truncatum HOM05D007884 ORTHO05D009968 2.0e-29 134.8 285 52.6
Os03g0119700 Oryza sativa ssp. japonica HOM05D007884 ORTHO05D009968 2.8e-28 131.0 381 26.2
RcHm_v2.0_Chr7g0232061 Rosa chinensis HOM05D007884 ORTHO05D009968 1.4e-27 128.6 491 25.3
FvH4_5g33340 Fragaria vesca HOM05D007884 ORTHO05D009968 4.1e-27 127.1 368 25.8
FAN18G0070 Fragaria x ananassa HOM05D007884 ORTHO05D009968 4.1e-27 127.1 368 25.8
FAN04G3024 Fragaria x ananassa HOM05D007884 ORTHO05D009968 6.1e-23 113.2 368 25.5
FAN08G1312 Fragaria x ananassa HOM05D007884 ORTHO05D009968 5.2e-22 110.2 299 27.4
Nitab4.5_0005550g0040 Nicotiana tabacum HOM05D006237 ORTHO05D002967 3.4e-21 107.5 196 43.9
Nitab4.5_0006974g0010 Nicotiana tabacum HOM05D006237 ORTHO05D002967 1.7e-17 95.1 196 41.3
SEGI_26452 Sequoiadendron giganteum HOM05D007884 ORTHO05D009968 1.6e-10 72.0 370 38.1
Sopen10g030770 Solanum pennellii HOM05D006237 ORTHO05D002967 6.6e-09 66.6 187 33.7
PGSC0003DMG400023687 Solanum tuberosum HOM05D006237 ORTHO05D002967 3.3e-08 64.3 165 35.2
Solyc10g080160.2 Solanum lycopersicum HOM05D006237 ORTHO05D002967 7.3e-08 63.2 164 35.4


User provided reference genes

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