Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.5e-287 992.3 528 100.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 6.6e-256 887.1 531 91.7
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 8.6e-256 886.7 531 91.5
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.1e-254 882.1 531 91.5
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.7e-240 833.6 533 87.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 8.8e-208 727.2 534 76.2
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.3e-203 713.4 534 74.5
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 1.0e-195 687.2 524 72.5
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.6e-185 652.1 512 71.3
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.7e-177 625.2 532 67.5
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.8e-173 613.2 524 67.7
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.2e-158 563.1 535 62.8
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.4e-157 560.5 522 62.3
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.0e-155 554.3 534 61.4
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 6.6e-155 551.6 535 60.6
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.5e-151 540.4 527 61.9
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 1.6e-148 530.4 524 61.3
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.1e-148 530.0 540 60.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 3.0e-147 526.2 518 61.4
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.1e-146 524.2 526 60.3
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.8e-145 519.6 521 58.7
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.2e-145 518.5 500 61.6
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.4e-144 517.3 535 60.2
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.8e-144 516.9 517 63.2
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.4e-143 512.7 532 58.5
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.7e-142 510.4 561 56.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 3.7e-142 509.2 513 58.9
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 6.4e-142 508.4 531 58.9
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.9e-141 506.9 532 57.1
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.1e-141 505.0 527 57.9
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.3e-139 500.0 528 59.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 5.1e-139 498.8 527 60.0
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 5.6e-138 495.4 530 56.8
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 9.5e-138 494.6 528 57.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.4e-136 490.0 536 56.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 6.8e-136 488.4 533 57.0
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.2e-135 487.6 544 56.1
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.2e-134 483.4 528 56.8
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.4e-133 480.7 522 58.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.9e-133 480.3 520 57.9
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 3.2e-133 479.6 498 59.2
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.2e-133 478.0 520 57.7
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.0e-131 474.6 523 55.8
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.0e-131 474.6 521 57.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.0e-131 474.6 517 57.4
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.6e-131 471.9 521 57.4
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.1e-130 471.1 533 55.5
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.3e-130 469.2 529 55.6
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 5.6e-130 468.8 532 55.6
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.1e-128 463.0 542 54.8
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.2e-127 461.1 514 57.2
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 2.0e-127 460.3 621 49.9
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 4.4e-127 459.1 508 53.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 7.6e-127 458.4 510 54.9
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 9.9e-127 458.0 526 54.9
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.3e-126 457.6 522 55.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.2e-126 456.8 534 55.6
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.8e-126 456.1 526 54.9
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 8.4e-126 454.9 493 57.4
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.2e-125 452.6 491 58.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 4.2e-125 452.6 525 55.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 5.4e-125 452.2 531 52.4
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.3e-123 447.6 553 51.7
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-123 447.2 518 55.6
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 6.6e-123 445.3 522 53.6
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 8.7e-123 444.9 531 51.2
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 4.8e-121 439.1 515 54.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 6.2e-121 438.7 533 52.3
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 1.5e-119 434.1 499 56.3
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 3.8e-118 429.5 511 56.0
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.9e-117 427.2 522 54.4
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 3.2e-117 426.4 503 54.3
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 3.2e-117 426.4 540 51.1
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 7.1e-117 425.2 524 54.2
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 1.2e-116 424.5 494 54.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.0e-115 421.4 525 53.5
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.5e-114 417.5 495 53.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 4.3e-114 416.0 529 49.5
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 5.6e-114 415.6 522 51.7
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 1.6e-113 414.1 531 49.7
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 2.8e-113 413.3 546 50.9
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 4.8e-113 412.5 481 53.8
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.4e-112 411.0 535 50.7
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.4e-112 411.0 522 52.1
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.8e-112 410.6 513 49.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.0e-112 409.5 495 53.1
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.7e-110 404.1 504 50.2
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.2e-110 403.7 541 48.4
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 2.2e-110 403.7 526 50.4
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.9e-110 402.5 541 51.0
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.2e-108 397.9 524 50.6
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 1.6e-108 397.5 529 50.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 4.6e-108 396.0 487 50.3
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.3e-107 393.7 530 48.7
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 5.1e-107 392.5 532 48.7
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 6.7e-107 392.1 389 60.2
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.7e-107 392.1 495 49.9
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 8.7e-107 391.7 517 51.1
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.5e-106 391.0 495 49.7
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.5e-106 390.2 543 47.5
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 2.5e-106 390.2 536 47.8
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 3.3e-106 389.8 538 50.6
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 5.6e-106 389.0 541 47.3
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 2.8e-105 386.7 520 50.2
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 3.7e-105 386.3 541 47.3
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 3.7e-105 386.3 530 47.9
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 4.8e-105 386.0 530 47.7
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 6.9e-104 382.1 523 47.2
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.2e-103 381.3 528 47.7
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 4.5e-103 379.4 513 51.9
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 4.5e-103 379.4 503 48.9
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 1.0e-102 378.3 505 48.5
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 2.9e-102 376.7 512 48.4
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 3.8e-102 376.3 520 48.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 6.5e-102 375.6 512 48.4
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.1e-101 374.8 512 48.2
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 7.1e-101 372.1 539 48.2
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 7.9e-100 368.6 423 57.4
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 2.5e-98 363.6 437 52.9
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 1.8e-96 357.5 527 48.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 6.9e-96 355.5 522 47.1
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.5e-95 354.4 518 47.9
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.7e-94 350.9 543 46.6
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.5e-90 337.8 370 55.9
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 5.7e-90 335.9 531 44.8
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.5e-87 327.8 366 57.4
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.4e-85 321.2 374 53.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 4.2e-85 319.7 277 63.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.5e-85 319.3 532 42.9
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 9.4e-85 318.5 538 45.4
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.4e-82 309.7 311 62.1
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.3e-80 302.8 510 43.7
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 9.1e-80 302.0 504 44.0
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.1e-74 285.0 445 44.3
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 9.7e-74 282.0 407 48.6
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 6.5e-70 269.2 574 38.2
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.5e-70 268.9 510 42.2
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.5e-69 267.3 407 42.3
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.3e-65 252.7 251 61.4
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 8.3e-65 252.3 210 66.7
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 1.5e-61 241.5 390 41.0
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 9.1e-56 222.2 329 46.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 4.5e-55 219.9 387 39.0
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.8e-54 216.9 387 39.0
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.9e-53 214.5 390 37.9
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.3e-53 213.8 382 39.8
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 6.1e-52 209.5 439 37.4
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 9.8e-50 202.2 463 36.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 5.0e-46 189.9 460 36.3
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.2e-42 178.7 182 59.3
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 6.4e-41 172.9 228 49.6
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.0e-40 169.5 123 78.9
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 1.6e-39 168.3 541 32.3
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.2e-36 158.7 499 30.7
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 3.6e-36 157.1 120 75.0
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 6.2e-36 156.4 449 34.1
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.4e-34 150.2 195 52.3
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 5.4e-32 143.3 192 50.0
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-31 142.1 275 37.8
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 3.0e-30 137.5 213 42.7
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.6e-29 133.3 306 35.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 8.1e-28 129.4 171 46.2
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 5.2e-27 126.7 185 43.8
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 9.9e-26 122.5 259 38.2
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 1.3e-22 112.1 417 29.7
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 4.3e-21 107.1 147 42.9
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 9.6e-21 105.9 119 56.3
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 2.0e-18 98.2 74 63.5
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 6.4e-17 93.2 196 42.9
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.6e-12 78.6 126 47.6
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.1e-11 75.9 95 48.4
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 2.0e-10 71.6 116 45.7
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 1.7e-09 68.6 64 54.7
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-09 67.8 413 23.7
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.9e-09 67.0 98 43.9
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.6e-07 62.0 111 41.4


User provided reference genes

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