Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 1.5e-23 112.1 58 100.0
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 2.1e-14 81.6 55 80.0
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 1.4e-13 79.0 48 85.4
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.4e-13 79.0 47 85.1
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 1.4e-13 79.0 45 86.7
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 1.8e-13 78.6 46 87.0
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 1.8e-13 78.6 45 88.9
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 2.3e-13 78.2 45 86.7
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 4.0e-13 77.4 45 86.7
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 4.0e-13 77.4 45 88.9
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 1.3e-11 72.4 46 80.4
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 1.3e-11 72.4 48 79.2
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.7e-11 72.0 47 80.9
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 1.7e-11 72.0 45 80.0
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 2.2e-11 71.6 45 80.0
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 2.2e-11 71.6 45 80.0
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 2.2e-11 71.6 46 78.3
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 2.2e-11 71.6 50 74.0
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 2.2e-11 71.6 45 82.2
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 2.9e-11 71.2 46 73.9
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 3.7e-11 70.9 54 68.5
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 3.7e-11 70.9 45 80.0
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 3.7e-11 70.9 45 80.0
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 3.7e-11 70.9 45 77.8
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 4.9e-11 70.5 47 78.7
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 4.9e-11 70.5 45 80.0
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 8.3e-11 69.7 50 70.0
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 8.3e-11 69.7 45 75.6
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 8.3e-11 69.7 45 75.6
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 8.3e-11 69.7 45 75.6
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 8.3e-11 69.7 40 85.0
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 1.1e-10 69.3 45 77.8
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 1.1e-10 69.3 48 77.1
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 1.1e-10 69.3 45 77.8
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 1.1e-10 69.3 45 75.6
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 1.1e-10 69.3 45 77.8
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 80.0
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 1.4e-10 68.9 47 76.6
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 1.4e-10 68.9 45 77.8
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 1.4e-10 68.9 57 59.6
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 1.4e-10 68.9 46 76.1
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 1.4e-10 68.9 48 72.9
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.9e-10 68.6 45 77.8
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 2.4e-10 68.2 45 77.8
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 3.2e-10 67.8 45 75.6
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 4.1e-10 67.4 45 75.6
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 4.1e-10 67.4 47 74.5
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 4.1e-10 67.4 45 68.9
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 5.4e-10 67.0 47 72.3
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 5.4e-10 67.0 45 75.6
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 5.4e-10 67.0 42 78.6
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 7.1e-10 66.6 45 75.6
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 7.1e-10 66.6 45 73.3
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 9.2e-10 66.2 44 72.7
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 1.2e-09 65.9 45 73.3
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 1.6e-09 65.5 45 73.3
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 2.1e-09 65.1 45 73.3
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 2.1e-09 65.1 45 71.1
Peaxi162Scf00689g00418 Petunia axillaris HOM05D007939 ORTHO05D010027 2.7e-09 64.7 54 68.5
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 2.7e-09 64.7 45 73.3
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 4.6e-09 63.9 44 75.0
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 4.6e-09 63.9 41 73.2
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 4.6e-09 63.9 45 68.9
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 7.8e-09 63.2 45 68.9
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 7.8e-09 63.2 46 67.4
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 7.8e-09 63.2 38 78.9
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 5.1e-08 60.5 45 66.7
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 5.1e-08 60.5 37 75.7
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 5.1e-08 60.5 45 66.7
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 1.1e-07 59.3 44 63.6
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 1.9e-07 58.5 44 61.4


User provided reference genes

Program Settings