Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.7e-55 217.6 109 100.0
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.5e-21 106.3 110 57.3
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 1.5e-21 106.3 110 57.3
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.5e-21 106.3 110 57.3
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 2.0e-21 105.9 110 56.4
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 2.0e-21 105.9 110 56.4
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 7.5e-21 104.0 110 55.5
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 2.2e-20 102.4 110 54.5
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.2e-20 102.4 108 55.6
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 2.2e-20 102.4 110 53.6
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 2.8e-20 102.1 110 54.5
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 2.8e-20 102.1 119 51.3
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 3.7e-20 101.7 110 54.5
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 4.9e-20 101.3 110 53.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 4.9e-20 101.3 110 53.6
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 4.9e-20 101.3 110 54.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 4.9e-20 101.3 110 54.5
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 6.3e-20 100.9 110 54.5
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 6.3e-20 100.9 110 53.6
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 6.3e-20 100.9 110 53.6
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 6.3e-20 100.9 110 53.6
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 8.3e-20 100.5 110 53.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 1.1e-19 100.1 110 52.7
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 1.1e-19 100.1 110 52.7
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 1.8e-19 99.4 110 52.7
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 1.8e-19 99.4 110 54.5
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 1.8e-19 99.4 110 52.7
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 1.8e-19 99.4 110 52.7
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.4e-19 99.0 110 51.8
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.4e-19 99.0 110 52.7
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 2.4e-19 99.0 110 52.7
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 2.4e-19 99.0 110 52.7
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 3.1e-19 98.6 110 52.7
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 3.1e-19 98.6 110 51.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 3.1e-19 98.6 110 52.7
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 3.1e-19 98.6 108 52.8
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 3.1e-19 98.6 110 52.7
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 4.1e-19 98.2 110 50.9
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 4.1e-19 98.2 110 52.7
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.4e-19 97.8 110 51.8
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 5.4e-19 97.8 110 52.7
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 5.4e-19 97.8 110 52.7
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 5.4e-19 97.8 110 52.7
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 51.8
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 51.8
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 51.8
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 50.9
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 52.7
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 50.9
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 7.0e-19 97.4 110 51.8
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 51.8
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 50.9
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 52.7
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 50.9
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 52.7
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 51.8
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 9.2e-19 97.1 110 50.9
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-18 96.7 110 50.9
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.2e-18 96.7 110 50.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.2e-18 96.7 110 50.9
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 1.2e-18 96.7 110 50.0
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 1.2e-18 96.7 110 51.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 1.6e-18 96.3 110 51.8
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.6e-18 96.3 110 51.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.6e-18 96.3 110 50.9
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 1.6e-18 96.3 110 50.9
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 52.7
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 52.7
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 52.7
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 52.7
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 2.0e-18 95.9 143 45.5
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 2.0e-18 95.9 108 51.9
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 50.9
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 52.7
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 2.0e-18 95.9 110 51.8
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 2.7e-18 95.5 110 50.0
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 3.5e-18 95.1 110 52.7
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 3.5e-18 95.1 110 50.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.9
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.9
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.9
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.9
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.9
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 4.5e-18 94.7 110 50.0
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 5.9e-18 94.4 108 51.9
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 5.9e-18 94.4 110 50.9
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 5.9e-18 94.4 108 51.9
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 5.9e-18 94.4 145 44.8
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 7.8e-18 94.0 108 50.9
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 7.8e-18 94.0 108 50.9
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 7.8e-18 94.0 108 50.9
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 7.8e-18 94.0 110 49.1
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 1.0e-17 93.6 110 50.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.0e-17 93.6 110 50.0
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.0e-17 93.6 110 50.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 1.0e-17 93.6 109 49.5
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 1.0e-17 93.6 108 50.9
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 1.3e-17 93.2 110 50.0
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 1.3e-17 93.2 145 42.1
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 1.3e-17 93.2 110 47.3
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 1.7e-17 92.8 110 50.9
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.7e-17 92.8 110 50.0
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.7e-17 92.8 110 50.0
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 1.7e-17 92.8 110 51.8
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.7e-17 92.8 145 44.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.3e-17 92.4 110 48.2
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-17 92.0 110 50.0
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 2.9e-17 92.0 110 50.0
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 2.9e-17 92.0 110 50.0
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 2.9e-17 92.0 110 50.0
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 2.9e-17 92.0 110 50.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-17 91.7 108 45.4
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-17 91.7 108 45.4
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-17 91.7 108 45.4
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.8e-17 91.7 108 45.4
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 3.8e-17 91.7 110 50.0
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 3.8e-17 91.7 110 50.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 3.8e-17 91.7 110 49.1
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 5.0e-17 91.3 109 48.6
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 6.6e-17 90.9 116 47.4
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 6.6e-17 90.9 110 48.2
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 8.6e-17 90.5 110 49.1
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 8.6e-17 90.5 110 49.1
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 8.6e-17 90.5 108 44.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 8.6e-17 90.5 109 48.6
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-16 90.1 110 48.2
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 1.1e-16 90.1 110 48.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 1.1e-16 90.1 110 50.9
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 1.6e-15 86.3 110 46.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 2.8e-15 85.5 116 45.7
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.0e-14 83.6 110 43.6
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 1.8e-14 82.8 110 46.4
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 3.0e-14 82.0 111 43.2
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.2e-13 80.1 110 43.6
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 1.5e-13 79.7 46 78.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.6e-13 79.0 115 42.6
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.4e-13 78.6 107 43.0
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 5.8e-13 77.8 46 76.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.7e-12 76.3 46 73.9
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 3.7e-12 75.1 109 41.3
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 8.3e-12 73.9 110 40.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 5.4e-11 71.2 107 43.0
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 9.2e-11 70.5 139 33.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.7e-10 68.9 44 72.7
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 4.6e-10 68.2 50 64.0
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 6.0e-10 67.8 48 66.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 1.4e-06 56.6 41 68.3
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.2e-06 54.7 34 70.6


User provided reference genes

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