Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.53 Capsicum annuum HOM05D004889 ORTHO05D005478 5.7e-239 830.9 531 100.0
PGSC0003DMG400033066 Solanum tuberosum HOM05D004889 ORTHO05D005478 1.3e-206 723.4 531 85.7
Sopen06g027440 Solanum pennellii HOM05D004889 ORTHO05D005478 3.7e-198 695.3 531 87.8
Solyc06g071140.3 Solanum lycopersicum HOM05D004889 ORTHO05D005478 2.4e-197 692.6 531 87.0
Dinv38643 Davidia involucrata HOM05D004889 ORTHO05D005478 5.2e-152 542.0 547 74.2
Peaxi162Scf00496g00012 Petunia axillaris HOM05D004889 ORTHO05D005478 4.2e-141 505.8 536 67.5
CsaV3_1G008010 Cucumis sativus L. HOM05D004889 ORTHO05D005478 3.1e-136 489.6 540 63.7
CANSAT80G0562 Cannabis sativa HOM05D004889 ORTHO05D005478 9.9e-135 484.6 547 67.1
TAR629G1437 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.2e-132 477.6 554 68.8
Nitab4.5_0000026g0250 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.6e-132 477.2 535 65.4
TAR039G0004 Trochodendron aralioides HOM05D004889 ORTHO05D005478 2.1e-132 476.9 554 68.8
Potri.015G090200 Populus trichocarpa HOM05D004889 ORTHO05D005478 6.0e-132 475.3 546 62.5
CSS0046467 Camellia sinensis var. sinensis HOM05D004889 ORTHO05D005478 7.9e-132 474.9 554 66.2
Rhsim12G0159900 Rhododendron simsii HOM05D004889 ORTHO05D005478 3.0e-131 473.0 547 65.8
TAR640G0002 Trochodendron aralioides HOM05D004889 ORTHO05D005478 3.9e-131 472.6 546 65.6
GSVIVG01008085001 Vitis vinifera HOM05D004889 ORTHO05D005478 5.1e-131 472.2 544 68.9
MELO3C002218.2 Cucumis melo HOM05D004889 ORTHO05D005478 6.7e-131 471.9 540 63.7
Potri.012G093000 Populus trichocarpa HOM05D004889 ORTHO05D005478 4.8e-129 465.7 547 62.5
vmacro16573 Vaccinium macrocarpon HOM05D004889 ORTHO05D005478 1.8e-128 463.8 586 62.3
FAN08G0221 Fragaria x ananassa HOM05D002295 ORTHO05D002789 1.2e-127 461.1 547 61.4
Manes.14G073400 Manihot esculenta HOM05D004889 ORTHO05D005478 3.4e-127 459.5 553 65.3
Ca_21861_v3 Cicer arietinum L. HOM05D004889 ORTHO05D005478 2.9e-126 456.4 548 67.2
TWI60G0433 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 2.9e-126 456.4 544 67.3
CiPaw.11G036000 Carya illinoinensis HOM05D004889 ORTHO05D005478 8.4e-126 454.9 551 66.8
Nitab4.5_0003595g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-125 453.8 535 63.6
Manes.06G097700 Manihot esculenta HOM05D004889 ORTHO05D005478 4.2e-125 452.6 559 66.0
Lj5A118T73 Lonicera japonica HOM05D004889 ORTHO05D005478 5.5e-125 452.2 550 66.7
Nn4g22998 Nelumbo nucifera HOM05D004889 ORTHO05D005478 7.1e-125 451.8 551 61.3
Duzib068G1437 Durio zibethinus HOM05D004889 ORTHO05D005478 9.3e-125 451.4 546 63.9
MD14G1191200 Malus domestica HOM05D004889 ORTHO05D005478 1.0e-123 448.0 557 60.0
FvH4_5g15820 Fragaria vesca HOM05D004889 ORTHO05D005478 2.3e-123 446.8 545 60.2
Thecc.03G076300 Theobroma cacao HOM05D004889 ORTHO05D005478 2.3e-123 446.8 545 67.0
Hund21165 Selenicereus undatus HOM05D004889 ORTHO05D005478 3.9e-123 446.0 550 65.6
Psat4g054400 Pisum sativum HOM05D004889 ORTHO05D005478 8.7e-123 444.9 554 64.3
Hma1.2p1_3047F.1_g332110 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.1e-122 444.5 550 65.8
Dinv19901 Davidia involucrata HOM05D004889 ORTHO05D005478 3.3e-122 443.0 544 68.0
FAN13G0367 Fragaria x ananassa HOM05D004889 ORTHO05D005478 1.6e-121 440.7 548 60.0
Sabra15G0112400 Salix brachista HOM05D004889 ORTHO05D005478 2.8e-121 439.9 540 61.9
Sed0007285 Sechium edule HOM05D004889 ORTHO05D005478 2.8e-121 439.9 545 60.7
Ciclev10019625m.g Citrus clementina HOM05D004889 ORTHO05D005478 3.7e-121 439.5 554 61.6
RcHm_v2.0_Chr7g0180311 Rosa chinensis HOM05D004889 ORTHO05D005478 1.1e-120 438.0 546 59.9
SalBow5G2608 Salvia bowleyana HOM05D004889 ORTHO05D005478 1.1e-120 438.0 559 62.3
Sabra12G0067700 Salix brachista HOM05D004889 ORTHO05D005478 1.4e-120 437.6 535 59.6
Migut.I00111 Erythranthe guttata HOM05D004889 ORTHO05D005478 6.9e-120 435.3 549 60.8
Gohir.A07G065700 Gossypium hirsutum HOM05D004889 ORTHO05D005478 6.9e-120 435.3 543 63.5
FAN18G0072 Fragaria x ananassa HOM05D002295 ORTHO05D002789 2.6e-119 433.3 568 57.6
Phvul.003G194500 Phaseolus vulgaris HOM05D004889 ORTHO05D005478 1.0e-118 431.4 555 63.2
TAR622G0909 Trochodendron aralioides HOM05D004889 ORTHO05D005478 1.0e-118 431.4 544 63.2
Duzib084G1322 Durio zibethinus HOM05D004889 ORTHO05D005478 1.3e-118 431.0 547 62.9
Eucgr.B00394 Eucalyptus grandis HOM05D004889 ORTHO05D005478 1.1e-117 427.9 549 65.0
MSTRG.23064 Avicennia marina HOM05D004889 ORTHO05D005478 5.5e-117 425.6 549 64.1
Sed0005054 Sechium edule HOM05D004889 ORTHO05D005478 9.3e-117 424.9 542 60.5
VMungo1215G2590 Vigna mungo HOM05D004889 ORTHO05D005478 9.3e-117 424.9 549 64.8
Haze_07757 Corylus avellana HOM05D004889 ORTHO05D005478 6.1e-116 422.2 546 63.6
EL10Ac8g20579 Beta vulgaris HOM05D004889 ORTHO05D005478 1.3e-115 421.0 544 61.4
Prupe.5G184200 Prunus persica HOM05D004889 ORTHO05D005478 5.1e-115 419.1 548 60.8
ClCG01G014310 Citrullus lanatus HOM05D004889 ORTHO05D005478 8.7e-115 418.3 559 57.8
MBI04_g18038_MAGBIO Magnolia biondii HOM05D004889 ORTHO05D005478 1.5e-114 417.5 559 65.5
QL03p038490 Quercus lobata HOM05D004889 ORTHO05D005478 2.5e-114 416.8 573 63.2
Duzib205G1395 Durio zibethinus HOM05D004889 ORTHO05D005478 5.7e-114 415.6 566 62.4
arahy.Tifrunner.gnm1.ann1.78U3A7 Arachis hypogaea HOM05D004889 ORTHO05D005478 7.4e-114 415.2 551 64.8
Actinidia04935 Actinidia chinensis HOM05D004889 ORTHO05D005478 4.8e-113 412.5 547 63.3
Glyma.05G031100 Glycine max HOM05D004889 ORTHO05D005478 1.8e-112 410.6 551 61.7
MD06G1185300 Malus domestica HOM05D004889 ORTHO05D005478 3.1e-112 409.8 550 58.0
AUR62031228 Chenopodium quinoa HOM05D004889 ORTHO05D005478 1.2e-111 407.9 586 53.6
Gorai.001G074100 Gossypium raimondii HOM05D004889 ORTHO05D005478 2.0e-111 407.1 543 62.1
Gohir.D07G070200 Gossypium hirsutum HOM05D004889 ORTHO05D005478 3.4e-111 406.4 543 61.9
ATR0712G167 Amborella trichopoda HOM05D004889 ORTHO05D005478 1.7e-110 404.1 549 59.9
Cpa.g.sc17.179 Carica papaya HOM05D004889 ORTHO05D005478 6.5e-110 402.1 523 65.4
AUR62027699 Chenopodium quinoa HOM05D004889 ORTHO05D005478 8.5e-110 401.7 540 57.4
Lj4g0007492 Lotus japonicus HOM05D004889 ORTHO05D005478 1.9e-109 400.6 549 64.7
Medtr4g107410 Medicago truncatula HOM05D004889 ORTHO05D005478 1.9e-109 400.6 556 62.6
Aqoxy3G00822 Aquilegia oxysepala HOM05D004889 ORTHO05D005478 4.2e-109 399.4 545 57.4
PSO161G0045 Papaver somniferum HOM05D004889 ORTHO05D005478 4.2e-109 399.4 548 61.9
Hma1.2p1_3047F.1_g332100 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.4e-109 398.3 555 63.2
arahy.Tifrunner.gnm1.ann1.9HIF7S Arachis hypogaea HOM05D004889 ORTHO05D005478 1.4e-107 394.4 552 62.9
PGR083G1434 Punica granatum HOM05D004889 ORTHO05D005478 2.0e-106 390.6 545 60.4
Lalb_Chr13g0298111 Lupinus albus HOM05D004889 ORTHO05D005478 1.8e-104 384.0 546 57.1
Lalb_Chr07g0182371 Lupinus albus HOM05D004889 ORTHO05D005478 7.7e-103 378.6 545 59.3
PSO478G3716 Papaver somniferum HOM05D004889 ORTHO05D005478 3.8e-102 376.3 548 61.7
TWI81G0893 Tripterygium wilfordii HOM05D004889 ORTHO05D005478 1.2e-100 371.3 548 60.4
COL.COLO4_33419 Corchorus olitorius HOM05D004889 ORTHO05D005478 2.7e-100 370.2 545 58.5
DCAR_016527 Daucus carota HOM05D004889 ORTHO05D005478 4.4e-98 362.8 548 57.7
THA.LOC104818246 Tarenaya hassleriana HOM05D004889 ORTHO05D005478 9.7e-98 361.7 563 60.9
ECA232G4768 Erigeron canadensis HOM05D000153 ORTHO05D000118 1.3e-97 361.3 549 56.6
SGA_v2.0_scaffold56G20073 Striga asiatica HOM05D004889 ORTHO05D005478 6.3e-97 359.0 573 54.1
HPP92_012530 Vanilla planifolia HOM05D004889 ORTHO05D005478 5.3e-96 355.9 563 55.1
CDE01G0549 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 5.5e-93 345.9 555 56.6
SEGI_11308 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 5.5e-93 345.9 550 58.4
Cc04_g15980 Coffea canephora HOM05D004889 ORTHO05D005478 1.2e-92 344.7 545 59.8
Aa31LG4G16530 Aethionema arabicum HOM05D004889 ORTHO05D005478 5.2e-91 339.3 596 50.8
TPR.G38450 Trifolium pratense HOM05D004889 ORTHO05D005478 1.2e-90 338.2 542 61.3
Ah.09g233410 Amaranthus hybridus HOM05D004889 ORTHO05D005478 5.7e-90 335.9 484 56.8
Atru.chr9.2345 Acer truncatum HOM05D004889 ORTHO05D005478 7.5e-90 335.5 466 63.5
CARHR276450 Cardamine hirsuta HOM05D004889 ORTHO05D005478 5.3e-88 329.3 557 51.5
BcaC01g02501 Brassica carinata HOM05D004889 ORTHO05D005478 5.9e-87 325.9 557 50.6
Medtr4g107420 Medicago truncatula HOM05D004889 ORTHO05D005478 2.2e-86 323.9 554 54.2
Sc12g0006090 Simmondsia chinensis HOM05D004889 ORTHO05D005478 2.2e-86 323.9 457 60.8
A06p29350 Brassica napus HOM05D004889 ORTHO05D005478 1.1e-85 321.6 556 56.1
Carub.0008s2340 Capsella rubella HOM05D004889 ORTHO05D005478 1.2e-84 318.2 555 49.9
BcaB02g09666 Brassica carinata HOM05D004889 ORTHO05D005478 6.1e-84 315.8 557 55.5
Sp2g25820 Schrenkiella parvula HOM05D004889 ORTHO05D005478 6.1e-84 315.8 549 56.8
BraA06t25888Z Brassica rapa HOM05D004889 ORTHO05D005478 1.2e-82 311.6 572 54.0
AL8G39620 Arabidopsis lyrata HOM05D004889 ORTHO05D005478 2.8e-81 307.0 560 48.2
BolC3t18668H Brassica oleracea HOM05D004889 ORTHO05D005478 4.8e-81 306.2 591 46.4
Lsat_1_v5_gn_4_105560 Lactuca sativa HOM05D004889 ORTHO05D005478 6.3e-81 305.8 546 49.8
HanXRQChr09g0271391 Helianthus annuus HOM05D004889 ORTHO05D005478 8.3e-81 305.4 539 53.8
HPP92_012535 Vanilla planifolia HOM05D004889 ORTHO05D005478 8.3e-81 305.4 562 48.2
C03p64130 Brassica napus HOM05D004889 ORTHO05D005478 3.1e-80 303.5 558 48.6
AT5G62640 Arabidopsis thaliana HOM05D004889 ORTHO05D005478 2.7e-79 300.4 549 50.6
Nn3g17093 Nelumbo nucifera HOM05D004889 ORTHO05D005478 4.2e-77 293.1 232 83.2
Nitab4.5_0003744g0020 Nicotiana tabacum HOM05D004889 ORTHO05D005478 4.2e-77 293.1 233 76.4
Pp3c4_160 Physcomitrium patens HOM05D004889 ORTHO05D005478 2.8e-76 290.4 592 49.2
CDE12G0348 Ceratophyllum demersum HOM05D004889 ORTHO05D005478 8.8e-75 285.4 403 61.5
Hma1.2p1_0104F.1_g050430 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 1.2e-71 275.0 493 59.0
Os07g0192900 Oryza sativa ssp. japonica HOM05D004889 ORTHO05D005478 1.1e-69 268.5 164 84.8
unitig_0.g784 Utricularia gibba HOM05D004889 ORTHO05D005478 8.9e-67 258.8 387 50.1
Mapoly0075s0020 Marchantia polymorpha HOM05D004889 ORTHO05D005478 3.7e-65 253.4 602 47.2
Oeu022615.1 Olea europaea HOM05D004889 ORTHO05D005478 7.0e-64 249.2 154 84.4
CARHR156590 Cardamine hirsuta HOM05D004889 ORTHO05D005478 9.2e-64 248.8 491 50.5
CBR_g4762 Chara braunii HOM05D004889 ORTHO05D005478 2.9e-57 227.3 154 77.3
BcaB02g09670 Brassica carinata HOM05D004889 ORTHO05D005478 3.0e-54 217.2 165 75.2
Thhalv10003972m.g Eutrema salsugineum HOM05D004889 ORTHO05D005478 3.1e-51 207.2 439 49.2
SMO351G0326 Selaginella moellendorffii HOM05D004889 ORTHO05D005478 6.8e-51 206.1 530 37.5
Actinidia37670 Actinidia chinensis HOM05D004889 ORTHO05D005478 9.9e-50 202.2 332 55.1
Medtr0444s0010 Medicago truncatula HOM05D004889 ORTHO05D005478 3.8e-41 173.7 397 48.1
Oeu022609.1 Olea europaea HOM05D004889 ORTHO05D005478 1.9e-40 171.4 351 52.7
Nitab4.5_0003744g0040 Nicotiana tabacum HOM05D004889 ORTHO05D005478 3.0e-38 164.1 110 84.5
Nitab4.5_0000003g0080 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.9e-37 161.4 275 56.0
Glyma.17G095700 Glycine max HOM05D004889 ORTHO05D005478 6.2e-36 156.4 239 55.6
AagrBONN_evm.TU.Sc2ySwM_228.3309 Anthoceros agrestis HOM05D004889 ORTHO05D005478 1.3e-33 148.7 503 41.4
Actinidia37671 Actinidia chinensis HOM05D004889 ORTHO05D005478 3.6e-28 130.6 121 66.1
HanXRQChr12g0361591 Helianthus annuus HOM05D004889 ORTHO05D005478 1.4e-27 128.6 109 69.7
unitig_0.g785 Utricularia gibba HOM05D004889 ORTHO05D005478 3.1e-27 127.5 129 63.6
Zm00001eb116440 Zea mays HOM05D004889 ORTHO05D005478 1.2e-26 125.6 106 68.9
Gohir.A11G028540 Gossypium hirsutum HOM05D004889 ORTHO05D005478 9.9e-26 122.5 71 84.5
Zm00001eb302650 Zea mays HOM05D004889 ORTHO05D005478 3.2e-24 117.5 81 69.1
BcaB02g09669 Brassica carinata HOM05D004889 ORTHO05D005478 1.6e-23 115.2 105 67.6
Cre07.g348700 Chlamydomonas reinhardtii HOM05D004889 ORTHO05D005478 2.8e-20 104.4 168 42.9
Hma1.2p1_0104F.1_g050420 Hydrangea macrophylla HOM05D004889 ORTHO05D005478 9.0e-19 99.4 64 82.8
Nitab4.5_0000003g0090 Nicotiana tabacum HOM05D004889 ORTHO05D005478 1.5e-18 98.6 110 66.4
arahy.Tifrunner.gnm1.ann1.KJ948Q Arachis hypogaea HOM05D004889 ORTHO05D005478 2.2e-17 94.7 103 59.2
SEGI_30438 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.1e-16 92.4 97 61.9
arahy.Tifrunner.gnm1.ann1.GYQ60G Arachis hypogaea HOM05D004889 ORTHO05D005478 1.5e-13 82.0 58 81.0
CiPaw.12G005400 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.7e-12 77.4 73 67.1
CiPaw.12G005600 Carya illinoinensis HOM05D004889 ORTHO05D005478 3.7e-12 77.4 73 67.1
Migut.D01883 Erythranthe guttata HOM05D000593 ORTHO05D000562 4.8e-12 77.0 86 58.1
SEGI_10816 Sequoiadendron giganteum HOM05D004889 ORTHO05D005478 1.8e-11 75.1 46 84.8
Oeu005056.1 Olea europaea HOM05D004889 ORTHO05D005478 2.9e-09 67.8 73 58.9
SEGI_38811 Sequoiadendron giganteum HOM05D010422 ORTHO05D005478 5.1e-06 57.0 80 50.0
MCO02G371 Micromonas commoda HOM05D004889 ORTHO05D005478 8.7e-06 56.2 158 32.3


User provided reference genes

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