Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.37 Capsicum annuum HOM05D002504 ORTHO05D007555 1.3e-227 792.7 398 100.0
Nitab4.5_0000269g0140 Nicotiana tabacum HOM05D002504 ORTHO05D007555 1.2e-180 636.7 393 80.9
PGSC0003DMG400033071 Solanum tuberosum HOM05D002504 ORTHO05D007555 1.2e-180 636.7 397 80.1
Sopen06g027310 Solanum pennellii HOM05D002504 ORTHO05D007555 4.2e-178 628.2 393 78.9
Solyc06g071010.4 Solanum lycopersicum HOM05D002504 ORTHO05D007555 3.9e-176 621.7 393 78.6
Nitab4.5_0007394g0010 Nicotiana tabacum HOM05D002504 ORTHO05D007555 2.1e-174 615.9 393 78.9
Peaxi162Scf00013g00007 Petunia axillaris HOM05D002504 ORTHO05D007555 8.2e-158 560.8 401 71.8
Oeu022629.1 Olea europaea HOM05D002504 ORTHO05D007555 2.3e-128 463.0 399 59.1
Cc04_g15430 Coffea canephora HOM05D002504 ORTHO05D007555 1.5e-122 443.7 397 56.9
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 5.5e-122 441.8 396 58.6
CSS0049848 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 2.3e-120 436.4 396 56.8
CSS0041593 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007555 1.2e-119 434.1 396 56.6
Dinv09821 Davidia involucrata HOM05D002504 ORTHO05D007555 2.6e-119 433.0 396 57.8
Actinidia34980 Actinidia chinensis HOM05D002504 ORTHO05D007555 1.3e-118 430.6 396 55.8
Rhsim12G0158700 Rhododendron simsii HOM05D002504 ORTHO05D007555 1.2e-113 414.1 396 54.5
Actinidia19055 Actinidia chinensis HOM05D002504 ORTHO05D007555 4.7e-113 412.1 366 56.3
TAR374G0022 Trochodendron aralioides HOM05D002504 ORTHO05D007555 7.0e-109 398.3 396 49.7
SalBow5G4081 Salvia bowleyana HOM05D002504 ORTHO05D007555 3.5e-108 396.0 390 52.6
CiPaw.11G039400 Carya illinoinensis HOM05D002504 ORTHO05D007555 5.9e-108 395.2 378 54.0
MSTRG.4344 Avicennia marina HOM05D002504 ORTHO05D007555 2.9e-107 392.9 391 51.9
Haze_07368 Corylus avellana HOM05D002504 ORTHO05D007555 5.0e-107 392.1 391 52.2
Duzib068G0930 Durio zibethinus HOM05D002504 ORTHO05D007555 3.6e-105 386.0 393 52.9
TAR622G0915 Trochodendron aralioides HOM05D002504 ORTHO05D007555 4.7e-105 385.6 397 51.9
Cfa018981 Carpinus fangiana HOM05D002504 ORTHO05D007555 5.2e-104 382.1 391 51.2
FAN08G0998 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.4e-103 379.4 394 49.7
Prupe.5G187600 Prunus persica HOM05D002504 ORTHO05D007555 3.4e-103 379.4 392 50.3
FvH4_5g15370 Fragaria vesca HOM05D002504 ORTHO05D007555 7.5e-103 378.3 394 49.7
QL10p015753 Quercus lobata HOM05D002504 ORTHO05D007555 7.5e-103 378.3 391 49.1
RcHm_v2.0_Chr7g0180701 Rosa chinensis HOM05D002504 ORTHO05D007555 1.3e-102 377.5 392 49.2
FAN04G1481 Fragaria x ananassa HOM05D002504 ORTHO05D007555 2.2e-102 376.7 394 49.5
FAN13G2799 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.7e-102 375.9 394 49.2
FAN18G2091 Fragaria x ananassa HOM05D002504 ORTHO05D007555 3.7e-102 375.9 394 49.5
Migut.I00134 Erythranthe guttata HOM05D002504 ORTHO05D007555 2.4e-101 373.2 400 50.8
Manes.14G075600 Manihot esculenta HOM05D002504 ORTHO05D007555 5.4e-101 372.1 396 50.3
Gohir.A11G029531 Gossypium hirsutum HOM05D002504 ORTHO05D007555 9.2e-101 371.3 393 51.1
Thecc.03G080700 Theobroma cacao HOM05D002504 ORTHO05D007555 1.2e-100 370.9 393 51.4
COL.COLO4_05456 Corchorus olitorius HOM05D002504 ORTHO05D007555 1.6e-100 370.5 392 50.3
TWI38G0829 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 2.0e-100 370.2 396 48.7
DCAR_001955 Daucus carota HOM05D002504 ORTHO05D007555 7.8e-100 368.2 397 51.1
ClCG01G016490 Citrullus lanatus HOM05D002504 ORTHO05D007555 1.0e-99 367.9 392 49.5
Gohir.D11G032900 Gossypium hirsutum HOM05D002504 ORTHO05D007555 1.0e-99 367.9 392 51.0
Nn3g16999 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.3e-99 366.7 390 48.5
QL10p005074 Quercus lobata HOM05D002504 ORTHO05D007555 5.0e-99 365.5 392 48.0
Ciclev10020527m.g Citrus clementina HOM05D002504 ORTHO05D007555 8.6e-99 364.8 392 49.5
TPR.G5442 Trifolium pratense HOM05D002504 ORTHO05D007555 5.6e-98 362.1 392 46.9
Gorai.007G035700 Gossypium raimondii HOM05D002504 ORTHO05D007555 7.3e-98 361.7 392 50.0
THA.LOC104808328 Tarenaya hassleriana HOM05D002504 ORTHO05D007555 9.5e-98 361.3 393 47.1
Potri.015G064300 Populus trichocarpa HOM05D002504 ORTHO05D007555 1.6e-97 360.5 396 49.0
TWI39G0444 Tripterygium wilfordii HOM05D002504 ORTHO05D007555 1.6e-97 360.5 396 47.5
Glyma.17G097600 Glycine max HOM05D002504 ORTHO05D007555 4.7e-97 359.0 391 49.1
Lj4g0008726 Lotus japonicus HOM05D002504 ORTHO05D007555 4.7e-97 359.0 396 47.7
Cpa.g.sc17.218 Carica papaya HOM05D002504 ORTHO05D007555 8.1e-97 358.2 391 48.1
Lsat_1_v5_gn_1_10961 Lactuca sativa HOM05D002504 ORTHO05D007555 1.1e-96 357.8 409 48.9
Medtr3g078030 Medicago truncatula HOM05D002504 ORTHO05D007555 1.1e-96 357.8 393 47.6
Sabra15G0090100 Salix brachista HOM05D002504 ORTHO05D007555 1.8e-96 357.1 396 48.2
VMungo1215G2696 Vigna mungo HOM05D002504 ORTHO05D007555 8.9e-96 354.8 398 46.2
CARHR019500 Cardamine hirsuta HOM05D002504 ORTHO05D007555 1.2e-95 354.4 394 46.4
CsaV3_6G042770 Cucumis sativus L. HOM05D002504 ORTHO05D007555 2.6e-95 353.2 393 47.8
MELO3C007518.2 Cucumis melo HOM05D002504 ORTHO05D007555 7.5e-95 351.7 392 47.7
Phvul.003G192200 Phaseolus vulgaris HOM05D002504 ORTHO05D007555 1.7e-94 350.5 391 46.0
Sed0014360 Sechium edule HOM05D002504 ORTHO05D007555 2.2e-94 350.1 394 48.5
Psat5g114360 Pisum sativum HOM05D002504 ORTHO05D007555 8.3e-94 348.2 391 45.8
arahy.Tifrunner.gnm1.ann1.WQI89G Arachis hypogaea HOM05D002504 ORTHO05D007555 2.4e-93 346.7 397 44.6
Lalb_Chr12g0196751 Lupinus albus HOM05D002504 ORTHO05D007555 5.4e-93 345.5 393 45.3
DCAR_001117 Daucus carota HOM05D002504 ORTHO05D007555 1.2e-92 344.4 395 48.9
Eucgr.A00822 Eucalyptus grandis HOM05D002504 ORTHO05D007555 1.2e-92 344.4 390 45.6
arahy.Tifrunner.gnm1.ann1.AAW7H5 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.1e-92 343.6 397 44.1
arahy.Tifrunner.gnm1.ann1.XHUI7I Arachis hypogaea HOM05D002504 ORTHO05D007555 2.7e-92 343.2 396 43.9
MD14G1195800 Malus domestica HOM05D002504 ORTHO05D007555 4.6e-92 342.4 392 46.7
Carub.0001s1850 Capsella rubella HOM05D002504 ORTHO05D007555 7.8e-92 341.7 417 44.1
Aa31LG7G3620 Aethionema arabicum HOM05D002504 ORTHO05D007555 1.0e-91 341.3 391 45.8
arahy.Tifrunner.gnm1.ann1.A4B6B0 Arachis hypogaea HOM05D002504 ORTHO05D007555 2.3e-91 340.1 392 44.1
Atru.BG.192.p Acer truncatum HOM05D002504 ORTHO05D007555 5.1e-91 339.0 344 50.6
AL1G31390 Arabidopsis lyrata HOM05D002504 ORTHO05D007555 1.9e-90 337.0 397 45.3
Sc10g0009970 Simmondsia chinensis HOM05D002504 ORTHO05D007555 1.9e-90 337.0 401 47.1
AT1G18850 Arabidopsis thaliana HOM05D002504 ORTHO05D007555 5.6e-90 335.5 397 45.3
EL10As5g23568 Beta vulgaris HOM05D002504 ORTHO05D007555 1.6e-89 334.0 401 45.6
TPR.G1695 Trifolium pratense HOM05D002504 ORTHO05D007555 1.6e-89 334.0 392 44.4
PSO591G0510 Papaver somniferum HOM05D002504 ORTHO05D007555 2.8e-89 333.2 391 45.5
CANSAT78G1429 Cannabis sativa HOM05D002504 ORTHO05D007555 4.7e-89 332.4 392 44.9
Thhalv10007868m.g Eutrema salsugineum HOM05D002504 ORTHO05D007555 4.7e-89 332.4 391 44.2
PSO832G2768 Papaver somniferum HOM05D002504 ORTHO05D007555 6.2e-89 332.0 391 45.3
Ca_16191_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007555 1.1e-88 331.3 392 44.4
Ah.02g112510 Amaranthus hybridus HOM05D002504 ORTHO05D007555 8.9e-88 328.2 403 43.9
Aqoxy3G03288 Aquilegia oxysepala HOM05D002504 ORTHO05D007555 8.9e-88 328.2 394 47.0
PGR083G1477 Punica granatum HOM05D002504 ORTHO05D007555 8.9e-88 328.2 395 45.1
unitig_52.g17495 Utricularia gibba HOM05D002504 ORTHO05D007555 2.6e-87 326.6 391 45.5
HanXRQChr06g0178031 Helianthus annuus HOM05D002504 ORTHO05D007555 7.6e-87 325.1 388 47.7
A06p15070 Brassica napus HOM05D002504 ORTHO05D007555 2.2e-86 323.6 390 41.5
BraA06t24622Z Brassica rapa HOM05D002504 ORTHO05D007555 1.4e-85 320.9 390 40.8
AUR62038455 Chenopodium quinoa HOM05D002504 ORTHO05D007555 1.4e-85 320.9 399 44.1
Glyma.05G029300 Glycine max HOM05D002504 ORTHO05D007555 2.4e-85 320.1 398 44.2
AUR62042153 Chenopodium quinoa HOM05D002504 ORTHO05D007555 3.5e-84 316.2 399 44.1
SHI03355 Sapria himalayana HOM05D002504 ORTHO05D007555 1.0e-83 314.7 395 44.3
Sp1g16830 Schrenkiella parvula HOM05D002504 ORTHO05D007555 1.0e-83 314.7 419 41.1
Lj5P114T15 Lonicera japonica HOM05D002504 ORTHO05D007555 5.6e-82 308.9 266 59.0
MBI03_g18947_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 1.6e-81 307.4 394 41.4
SGA_v2.0_scaffold56G20046 Striga asiatica HOM05D002504 ORTHO05D007555 2.1e-81 307.0 334 49.4
C05p17270 Brassica napus HOM05D002504 ORTHO05D007555 8.1e-81 305.1 418 39.2
BolC5t30427H Brassica oleracea HOM05D002504 ORTHO05D007555 8.1e-81 305.1 418 39.2
Lj7P436T44 Lonicera japonica HOM05D002504 ORTHO05D007555 8.1e-81 305.1 312 53.2
BcaC05g25787 Brassica carinata HOM05D002504 ORTHO05D007555 2.0e-79 300.4 418 38.5
PSO063G6525 Papaver somniferum HOM05D002504 ORTHO05D007555 1.7e-78 297.4 391 42.5
BcaB07g31903 Brassica carinata HOM05D002504 ORTHO05D007555 2.2e-78 297.0 420 38.3
HPP92_004873 Vanilla planifolia HOM05D002504 ORTHO05D007555 1.1e-77 294.7 398 41.5
Nn5g27262 Nelumbo nucifera HOM05D002504 ORTHO05D007555 7.1e-77 292.0 268 54.1
MBI11_g21312_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 6.2e-73 278.9 393 38.9
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 8.1e-73 278.5 277 52.3
MBI03_g28522_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007555 8.1e-73 278.5 393 39.9
CDE07G0237 Ceratophyllum demersum HOM05D002504 ORTHO05D007555 9.0e-72 275.0 370 39.5
GSVIVG01008049001 Vitis vinifera HOM05D002504 ORTHO05D007555 7.9e-68 261.9 343 44.0
Dinv02434 Davidia involucrata HOM05D002504 ORTHO05D007555 2.1e-60 237.3 181 65.7
ATR1120G016 Amborella trichopoda HOM05D002504 ORTHO05D007555 5.8e-55 219.2 419 32.9
Os01g0112100 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007555 2.8e-41 173.7 273 35.2
SEGI_18201 Sequoiadendron giganteum HOM05D002504 ORTHO05D007555 1.2e-36 158.3 401 30.7
Zm00001eb334590 Zea mays HOM05D002504 ORTHO05D007555 1.4e-35 154.8 270 34.1
Zm00001eb126250 Zea mays HOM05D002504 ORTHO05D007555 7.4e-34 149.1 257 34.6
Duzib205G0461 Durio zibethinus HOM05D002504 ORTHO05D007555 3.4e-31 140.2 188 45.7
AagrBONN_evm.TU.Sc2ySwM_369.370 Anthoceros agrestis HOM05D002504 ORTHO05D007555 3.1e-24 117.1 385 24.9
Pp3c1_3820 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-22 111.7 404 25.0
Pp3c1_3850 Physcomitrium patens HOM05D002504 ORTHO05D007555 1.3e-22 111.7 404 25.0
Sabra12G0030300 Salix brachista HOM05D002504 ORTHO05D007555 2.0e-18 97.8 179 37.4
Aa31LG9G8990 Aethionema arabicum HOM05D000710 ORTHO05D000336 4.4e-18 96.7 250 27.6
Mapoly0028s0021 Marchantia polymorpha HOM05D002504 ORTHO05D007555 7.5e-18 95.9 330 23.0
BcaB07g32205 Brassica carinata HOM05D002504 ORTHO05D007555 1.3e-17 95.1 259 27.0
Ciclev10033409m.g Citrus clementina HOM05D002504 ORTHO05D007555 1.7e-17 94.7 181 34.8
Nn5g27265 Nelumbo nucifera HOM05D002504 ORTHO05D007555 2.2e-17 94.4 432 25.2
CBR_g26261 Chara braunii HOM05D002504 ORTHO05D007555 3.6e-12 77.0 275 28.7
SMO367G0630 Selaginella moellendorffii HOM05D002504 ORTHO05D007555 6.1e-12 76.3 288 25.7
arahy.Tifrunner.gnm1.ann1.8LRZ9F Arachis hypogaea HOM05D002504 ORTHO05D007555 3.0e-11 73.9 106 36.8
Dinv09820 Davidia involucrata HOM05D000025 ORTHO05D000450 4.1e-08 63.5 47 68.1


User provided reference genes

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