Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G628.1 Capsicum annuum HOM05D003700 ORTHO05D004160 2.8e-56 221.9 122 100.0
Sopen06g027060 Solanum pennellii HOM05D003700 ORTHO05D004160 2.3e-34 149.1 108 75.0
PGSC0003DMG400033045 Solanum tuberosum HOM05D003700 ORTHO05D004160 8.6e-34 147.1 108 75.0
Nitab4.5_0007189g0070 Nicotiana tabacum HOM05D003700 ORTHO05D004160 2.5e-33 145.6 109 74.3
Solyc06g069770.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 3.3e-33 145.2 108 73.1
Nitab4.5_0011015g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 4.3e-33 144.8 109 74.3
Dinv38714 Davidia involucrata HOM05D003700 ORTHO05D004160 1.7e-21 106.3 91 67.0
Dinv19966 Davidia involucrata HOM05D003700 ORTHO05D004160 1.6e-19 99.8 91 62.6
Hma1.2p1_1936F.1_g308180 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 7.9e-19 97.4 112 53.6
TAR622G0031 Trochodendron aralioides HOM05D003700 ORTHO05D004160 1.0e-18 97.1 95 61.1
Sabra05G0035300 Salix brachista HOM05D003700 ORTHO05D004160 6.6e-18 94.4 93 57.0
Nitab4.5_0006000g0030 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.1e-17 93.6 112 55.4
Hma1.2p1_1936F.1_g308170 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 1.9e-17 92.8 107 55.1
Hma1.2p1_2516F.1_g323665 Hydrangea macrophylla HOM05D003700 ORTHO05D004160 1.9e-17 92.8 107 55.1
Peaxi162Scf00013g00333 Petunia axillaris HOM05D003700 ORTHO05D004160 5.6e-17 91.3 75 69.3
Sabra13G0024600 Salix brachista HOM05D003700 ORTHO05D004160 9.6e-17 90.5 114 50.9
Cc04_g16600 Coffea canephora HOM05D003700 ORTHO05D004160 1.3e-16 90.1 115 51.3
TAR371G1074 Trochodendron aralioides HOM05D003700 ORTHO05D004160 4.8e-16 88.2 92 53.3
CSS0035089 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 1.4e-15 86.7 113 50.4
PGSC0003DMG400019531 Solanum tuberosum HOM05D003700 ORTHO05D004160 1.4e-15 86.7 94 58.5
AUR62021675 Chenopodium quinoa HOM05D003700 ORTHO05D004160 1.8e-15 86.3 89 53.9
Solyc03g116020.3 Solanum lycopersicum HOM05D003700 ORTHO05D004160 1.8e-15 86.3 111 53.2
CSS0045012 Camellia sinensis var. sinensis HOM05D022698 ORTHO05D004160 6.9e-15 84.3 116 48.3
Lj5A110T129 Lonicera japonica HOM05D003700 ORTHO05D004160 1.2e-14 83.6 105 53.3
CANSAT56G3341 Cannabis sativa HOM05D003700 ORTHO05D004160 1.5e-14 83.2 117 47.9
Nitab4.5_0001128g0150 Nicotiana tabacum HOM05D003700 ORTHO05D004160 1.5e-14 83.2 84 58.3
Sed0020544 Sechium edule HOM05D003700 ORTHO05D004160 1.5e-14 83.2 89 52.8
Sopen03g035010 Solanum pennellii HOM05D003700 ORTHO05D004160 2.0e-14 82.8 111 51.4
Thecc.03G087800 Theobroma cacao HOM05D003700 ORTHO05D004160 2.0e-14 82.8 117 47.0
Lalb_Chr23g0273811 Lupinus albus HOM05D003700 ORTHO05D004160 3.4e-14 82.0 91 53.8
CAN.G837.20 Capsicum annuum HOM05D003700 ORTHO05D004160 5.8e-14 81.3 87 57.5
SGA_v2.0_scaffold114G31908 Striga asiatica HOM05D003700 ORTHO05D004160 7.6e-14 80.9 92 53.3
Actinidia37626 Actinidia chinensis HOM05D003700 ORTHO05D004160 9.9e-14 80.5 72 59.7
MSTRG.9629 Avicennia marina HOM05D003700 ORTHO05D004160 9.9e-14 80.5 97 49.5
CiPaw.11G044800 Carya illinoinensis HOM05D003700 ORTHO05D004160 9.9e-14 80.5 92 56.5
Nn3g17245 Nelumbo nucifera HOM05D003700 ORTHO05D004160 1.3e-13 80.1 105 47.6
Prupe.5G193800 Prunus persica HOM05D003700 ORTHO05D004160 1.3e-13 80.1 89 51.7
ECA247G0346 Erigeron canadensis HOM05D003700 ORTHO05D004160 1.7e-13 79.7 112 46.4
Duzib205G1944 Durio zibethinus HOM05D003700 ORTHO05D004160 2.2e-13 79.3 89 53.9
Medtr3g435580 Medicago truncatula HOM05D003700 ORTHO05D004160 2.9e-13 79.0 117 46.2
Haze_07324 Corylus avellana HOM05D003700 ORTHO05D004160 3.8e-13 78.6 67 59.7
CsaV3_1G002330 Cucumis sativus L. HOM05D003700 ORTHO05D004160 4.9e-13 78.2 89 55.1
Sc12g0006380 Simmondsia chinensis HOM05D003700 ORTHO05D004160 4.9e-13 78.2 89 52.8
TWI81G0244 Tripterygium wilfordii HOM05D003700 ORTHO05D004160 4.9e-13 78.2 99 47.5
Actinidia04888 Actinidia chinensis HOM05D003700 ORTHO05D004160 6.4e-13 77.8 72 58.3
Atru.chr11.2689 Acer truncatum HOM05D003700 ORTHO05D004160 8.4e-13 77.4 88 54.5
AUR62008420 Chenopodium quinoa HOM05D003700 ORTHO05D004160 1.1e-12 77.0 89 49.4
Ciclev10022133m.g Citrus clementina HOM05D003700 ORTHO05D004160 1.1e-12 77.0 66 60.6
MELO3C017173.2 Cucumis melo HOM05D003700 ORTHO05D004160 1.1e-12 77.0 103 48.5
HanXRQChr04g0107321 Helianthus annuus HOM05D003700 ORTHO05D004160 1.1e-12 77.0 114 47.4
MD14G1200600 Malus domestica HOM05D003700 ORTHO05D004160 1.1e-12 77.0 89 55.1
FAN13G0167 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.4e-12 76.6 112 45.5
Potri.005G033100 Populus trichocarpa HOM05D003700 ORTHO05D004160 2.4e-12 75.9 89 49.4
ClCG06G016210 Citrullus lanatus HOM05D003700 ORTHO05D004160 3.2e-12 75.5 105 46.7
SGA_v2.0_scaffold7G04064 Striga asiatica HOM05D003700 ORTHO05D004160 3.2e-12 75.5 92 51.1
FAN08G2213 Fragaria x ananassa HOM05D003700 ORTHO05D004160 4.2e-12 75.1 107 49.5
FAN18G4275 Fragaria x ananassa HOM05D003700 ORTHO05D004160 4.2e-12 75.1 112 44.6
EL10Ac5g11021 Beta vulgaris HOM05D003700 ORTHO05D004160 7.1e-12 74.3 94 50.0
Lsat_1_v5_gn_1_13920 Lactuca sativa HOM05D003700 ORTHO05D004160 9.3e-12 73.9 112 48.2
Gohir.A03G066800 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.2e-11 73.6 89 55.1
FvH4_5g14920 Fragaria vesca HOM05D003700 ORTHO05D004160 1.6e-11 73.2 112 44.6
FAN04G3111 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.6e-11 73.2 112 44.6
FAN13G0273 Fragaria x ananassa HOM05D003700 ORTHO05D004160 1.6e-11 73.2 112 44.6
Lalb_Chr08g0235721 Lupinus albus HOM05D003700 ORTHO05D004160 2.7e-11 72.4 91 52.7
THA.LOC104821421 Tarenaya hassleriana HOM05D003700 ORTHO05D004160 2.7e-11 72.4 113 45.1
Cfa018940 Carpinus fangiana HOM05D003700 ORTHO05D004160 3.5e-11 72.0 94 50.0
Gohir.D03G093300 Gossypium hirsutum HOM05D003700 ORTHO05D004160 3.5e-11 72.0 89 53.9
Gorai.003G097200 Gossypium raimondii HOM05D003700 ORTHO05D004160 3.5e-11 72.0 89 53.9
vmacro11460 Vaccinium macrocarpon HOM05D003700 ORTHO05D004160 4.6e-11 71.6 70 58.6
Gohir.D11G035000 Gossypium hirsutum HOM05D003700 ORTHO05D004160 7.9e-11 70.9 101 44.6
Gorai.007G037700 Gossypium raimondii HOM05D003700 ORTHO05D004160 7.9e-11 70.9 101 44.6
HanXRQChr02g0043591 Helianthus annuus HOM05D003700 ORTHO05D004160 7.9e-11 70.9 79 50.6
Migut.D01816 Erythranthe guttata HOM05D003700 ORTHO05D004160 1.0e-10 70.5 112 40.2
Gohir.A11G031331 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.0e-10 70.5 101 44.6
MD06G1193500 Malus domestica HOM05D003700 ORTHO05D004160 1.0e-10 70.5 61 60.7
Lj4g0000044 Lotus japonicus HOM05D003700 ORTHO05D004160 1.3e-10 70.1 63 57.1
Medtr2g094530 Medicago truncatula HOM05D003700 ORTHO05D004160 1.3e-10 70.1 89 49.4
QL10p017042 Quercus lobata HOM05D003700 ORTHO05D004160 1.3e-10 70.1 66 56.1
RcHm_v2.0_Chr7g0181461 Rosa chinensis HOM05D003700 ORTHO05D004160 1.8e-10 69.7 65 55.4
Sc04g0002660 Simmondsia chinensis HOM05D003700 ORTHO05D004160 1.8e-10 69.7 47 61.7
Eucgr.B00508 Eucalyptus grandis HOM05D003700 ORTHO05D004160 3.0e-10 68.9 66 54.5
Manes.06G092100 Manihot esculenta HOM05D003700 ORTHO05D004160 3.0e-10 68.9 46 60.9
Potri.013G022500 Populus trichocarpa HOM05D003700 ORTHO05D004160 3.0e-10 68.9 41 65.9
Glyma.05G026600 Glycine max HOM05D003700 ORTHO05D004160 5.1e-10 68.2 76 52.6
Hund02648 Selenicereus undatus HOM05D003700 ORTHO05D004160 6.7e-10 67.8 41 68.3
CDE04G0998 Ceratophyllum demersum HOM05D004763 ORTHO05D007492 8.7e-10 67.4 90 46.7
Gohir.A11G031511 Gossypium hirsutum HOM05D003700 ORTHO05D004160 1.1e-09 67.0 92 45.7
Oeu047295.1 Olea europaea HOM05D003700 ORTHO05D004160 1.1e-09 67.0 88 45.5
PSO832G2691 Papaver somniferum HOM05D003700 ORTHO05D004160 1.1e-09 67.0 87 50.6
Phvul.009G187000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 1.1e-09 67.0 120 41.7
SalBow7G0736 Salvia bowleyana HOM05D003700 ORTHO05D004160 1.1e-09 67.0 102 42.2
TPR.G11909 Trifolium pratense HOM05D003700 ORTHO05D004160 1.1e-09 67.0 71 50.7
CDE08G0283 Ceratophyllum demersum HOM05D003700 ORTHO05D004160 2.5e-09 65.9 90 43.3
Sed0006743 Sechium edule HOM05D003700 ORTHO05D004160 2.5e-09 65.9 93 41.9
arahy.Tifrunner.gnm1.ann1.4WDU0A Arachis hypogaea HOM05D003700 ORTHO05D004160 3.3e-09 65.5 119 41.2
Glyma.17G100300 Glycine max HOM05D003700 ORTHO05D004160 3.3e-09 65.5 72 51.4
DCAR_016563 Daucus carota HOM05D003700 ORTHO05D004160 5.6e-09 64.7 110 35.5
PGR083G2029 Punica granatum HOM05D003700 ORTHO05D004160 5.6e-09 64.7 114 39.5
A02p42310 Brassica napus HOM05D003700 ORTHO05D004160 1.3e-08 63.5 71 47.9
BraA02t09160Z Brassica rapa HOM05D003700 ORTHO05D004160 1.3e-08 63.5 71 47.9
Psat4g050880 Pisum sativum HOM05D003700 ORTHO05D004160 1.6e-08 63.2 66 47.0
VMungo1215G2263 Vigna mungo HOM05D003700 ORTHO05D004160 1.6e-08 63.2 101 43.6
SEGI_41222 Sequoiadendron giganteum HOM05D003700 ORTHO05D004160 2.8e-08 62.4 75 46.7
Phvul.003G190000 Phaseolus vulgaris HOM05D003700 ORTHO05D004160 3.7e-08 62.0 103 45.6
Psat5g193120 Pisum sativum HOM05D003700 ORTHO05D004160 3.7e-08 62.0 48 58.3
Atru.chr9.273 Acer truncatum HOM05D003700 ORTHO05D004160 8.1e-08 60.8 83 45.8
COL.COLO4_35537 Corchorus olitorius HOM05D003700 ORTHO05D004160 8.1e-08 60.8 41 61.0
Lalb_Chr07g0178061 Lupinus albus HOM05D003700 ORTHO05D004160 8.1e-08 60.8 104 35.6
BolC2t12276H Brassica oleracea HOM05D003700 ORTHO05D004160 1.1e-07 60.5 71 46.5
Nn4g23176 Nelumbo nucifera HOM05D003700 ORTHO05D004160 1.1e-07 60.5 40 60.0
Os03g0187000 Oryza sativa ssp. japonica HOM05D003700 ORTHO05D004160 1.1e-07 60.5 39 59.0
PSO013G0046 Papaver somniferum HOM05D003700 ORTHO05D004160 1.1e-07 60.5 87 46.0
ATR1127G116 Amborella trichopoda HOM05D003700 ORTHO05D004160 1.4e-07 60.1 57 52.6
Lj1g0000196 Lotus japonicus HOM05D003700 ORTHO05D004160 1.4e-07 60.1 92 43.5
HPP92_005935 Vanilla planifolia HOM05D003700 ORTHO05D004160 1.4e-07 60.1 36 63.9
Gohir.D11G034700 Gossypium hirsutum HOM05D003700 ORTHO05D004160 2.4e-07 59.3 112 37.5
Carub.0008s2312 Capsella rubella HOM05D003700 ORTHO05D004160 3.1e-07 58.9 52 53.8
unitig_62.g23549 Utricularia gibba HOM05D003700 ORTHO05D004160 3.1e-07 58.9 125 35.2
COL.COLO4_05649 Corchorus olitorius HOM05D001496 ORTHO05D007453 4.0e-07 58.5 58 50.0
Potri.013G021800 Populus trichocarpa HOM05D003700 ORTHO05D004160 5.3e-07 58.2 64 43.8
arahy.Tifrunner.gnm1.ann1.H69J8I Arachis hypogaea HOM05D003700 ORTHO05D004160 6.9e-07 57.8 76 43.4
arahy.Tifrunner.gnm1.ann1.6Q68A3 Arachis hypogaea HOM05D003700 ORTHO05D004160 9.0e-07 57.4 119 36.1
Aa31LG4G16330 Aethionema arabicum HOM05D003700 ORTHO05D004160 1.2e-06 57.0 87 39.1
BcaB07g29837 Brassica carinata HOM05D003700 ORTHO05D004160 1.2e-06 57.0 53 50.9
BolC3t18700H Brassica oleracea HOM05D003700 ORTHO05D004160 1.2e-06 57.0 71 47.9
arahy.Tifrunner.gnm1.ann1.DV8NSN Arachis hypogaea HOM05D003700 ORTHO05D004160 1.5e-06 56.6 118 31.4
arahy.Tifrunner.gnm1.ann1.N073K6 Arachis hypogaea HOM05D003700 ORTHO05D004160 1.5e-06 56.6 119 35.3
Pp3c23_7150 Physcomitrium patens HOM05D003700 ORTHO05D004160 2.0e-06 56.2 91 39.6
arahy.Tifrunner.gnm1.ann1.L6WE06 Arachis hypogaea HOM05D003700 ORTHO05D004160 2.6e-06 55.8 115 31.3
TPR.G15244 Trifolium pratense HOM05D003700 ORTHO05D004160 2.6e-06 55.8 36 63.9
AL8G39330 Arabidopsis lyrata HOM05D003700 ORTHO05D004160 3.4e-06 55.5 41 56.1
BcaC03g18149 Brassica carinata HOM05D003700 ORTHO05D004160 3.4e-06 55.5 46 52.2
COL.COLO4_32291 Corchorus olitorius HOM05D003700 ORTHO05D004160 3.4e-06 55.5 53 52.8
AT5G62440 Arabidopsis thaliana HOM05D003700 ORTHO05D004160 4.5e-06 55.1 90 42.2
BcaB02g09647 Brassica carinata HOM05D003700 ORTHO05D004160 4.5e-06 55.1 72 44.4
Sp2g25630 Schrenkiella parvula HOM05D003700 ORTHO05D004160 4.5e-06 55.1 45 51.1
arahy.Tifrunner.gnm1.ann1.G7C7PJ Arachis hypogaea HOM05D003700 ORTHO05D004160 7.6e-06 54.3 107 34.6
C02p62180 Brassica napus HOM05D003700 ORTHO05D004160 1.0e-05 53.9 45 51.1


User provided reference genes

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