Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 4.3e-173 611.3 321 100.0
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.5e-141 505.8 380 71.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 8.4e-137 490.7 371 71.2
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 3.6e-132 475.3 380 70.5
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 6.9e-115 417.9 330 69.1
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 5.8e-114 414.8 362 64.1
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 3.2e-112 409.1 396 59.3
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.3e-108 397.1 347 63.1
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 3.6e-103 379.0 379 56.5
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 5.1e-102 375.2 392 56.9
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 1.1e-101 374.0 399 55.6
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 2.5e-101 372.9 403 55.6
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 3.3e-101 372.5 405 55.1
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 2.2e-100 369.8 403 55.1
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.8e-99 366.7 404 54.5
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 6.9e-99 364.8 405 56.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 9.1e-99 364.4 406 53.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.5e-98 363.6 339 61.4
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.6e-98 362.8 401 53.6
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.4e-98 362.5 403 53.8
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 1.0e-97 360.9 390 53.8
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.0e-97 360.9 391 54.5
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 5.0e-97 358.6 395 53.9
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 8.5e-97 357.8 404 55.4
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-96 357.1 400 55.8
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.7e-95 352.8 393 55.0
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.0e-94 350.9 380 56.3
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.1e-94 348.6 414 52.2
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 6.7e-94 348.2 372 56.2
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.3e-93 345.9 371 58.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 3.3e-93 345.9 407 51.4
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 4.4e-93 345.5 400 51.8
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 9.7e-93 344.4 357 57.1
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.8e-91 340.1 341 58.1
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 4.1e-91 339.0 406 52.0
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.9e-88 330.1 357 54.1
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.5e-88 329.7 391 51.4
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 2.5e-88 329.7 400 51.5
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 3.2e-88 329.3 327 59.3
Nitab4.5_0004399g0090 Nicotiana tabacum HOM05D004237 ORTHO05D005002 4.2e-88 328.9 297 65.7
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.7e-87 326.2 347 55.3
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.4e-86 323.9 372 52.7
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 2.0e-85 320.1 404 49.5
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.7e-84 317.0 376 53.2
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.4e-83 313.2 435 45.1
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 2.6e-82 309.7 300 62.7
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.7e-81 307.0 400 49.8
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 1.2e-79 300.8 411 47.4
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 2.7e-79 299.7 434 47.2
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.1e-79 298.5 401 48.4
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 1.4e-78 297.4 396 48.5
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.8e-78 297.0 350 53.1
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.8e-78 297.0 407 46.4
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 4.0e-78 295.8 412 48.1
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 4.0e-78 295.8 355 53.8
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.2e-77 294.3 360 50.8
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 4.4e-77 292.4 411 47.4
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 5.7e-77 292.0 355 50.1
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.3e-76 290.8 413 45.8
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 3.7e-76 289.3 347 51.3
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 3.7e-76 289.3 386 47.2
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.1e-75 287.7 370 50.8
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 4.5e-74 282.3 369 50.1
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 8.0e-71 271.6 375 47.2
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 8.0e-71 271.6 375 47.2
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 1.8e-70 270.4 335 51.3
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 1.7e-65 253.8 386 43.5
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.1e-51 208.0 342 41.8
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-50 204.5 228 51.8
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 3.1e-46 189.9 133 68.4
Lj2P435T33 Lonicera japonica HOM05D004237 ORTHO05D005002 1.1e-43 181.4 247 48.6
Glyma.14G069000 Glycine max HOM05D004237 ORTHO05D005002 3.2e-43 179.9 278 44.6
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.1e-43 178.7 433 34.4
AUR62023195 Chenopodium quinoa HOM05D004237 ORTHO05D005002 2.7e-42 176.8 252 46.4
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 6.6e-41 172.2 123 64.2
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.3e-40 169.5 476 32.6
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 5.6e-40 169.1 342 35.4
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 2.8e-39 166.8 239 43.9
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 3.6e-39 166.4 354 35.6
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 4.0e-38 162.9 155 52.9
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 6.8e-38 162.2 145 53.8
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 8.9e-38 161.8 231 43.3
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 1.5e-37 161.0 153 53.6
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 1.5e-37 161.0 146 54.8
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 2.0e-37 160.6 145 53.1
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.0e-37 160.6 155 52.3
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.6e-37 160.2 154 52.6
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.6e-37 160.2 193 43.5
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 3.4e-37 159.8 154 52.6
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 4.4e-37 159.5 133 55.6
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 5.8e-37 159.1 159 49.7
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 5.8e-37 159.1 166 51.2
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 9.9e-37 158.3 155 52.9
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 9.9e-37 158.3 428 30.8
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.3e-36 157.9 153 50.3
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 1.3e-36 157.9 168 47.0
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.7e-36 157.5 153 51.0
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.2e-36 157.1 162 50.6
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 2.9e-36 156.8 315 34.3
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 2.9e-36 156.8 167 47.3
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.9e-36 156.8 153 52.9
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 2.9e-36 156.8 153 52.9
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 3.7e-36 156.4 151 51.7
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.7e-36 156.4 157 51.6
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.7e-36 156.4 157 51.6
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 4.9e-36 156.0 145 52.4
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 4.9e-36 156.0 173 48.6
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 8.3e-36 155.2 119 61.3
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 1.1e-35 154.8 119 59.7
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.1e-35 152.9 162 48.8
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.4e-35 152.5 145 51.7
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 5.4e-35 152.5 130 53.8
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 5.4e-35 152.5 162 48.8
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 5.4e-35 152.5 125 56.8
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 7.1e-35 152.1 121 57.0
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 7.1e-35 152.1 121 57.0
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 9.2e-35 151.8 155 50.3
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-34 151.4 437 30.2
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 1.2e-34 151.4 437 30.2
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 1.2e-34 151.4 162 48.1
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.6e-34 151.0 131 55.7
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 7.8e-34 148.7 437 30.7
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 7.8e-34 148.7 418 32.3
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 3.9e-33 146.4 121 54.5
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 3.9e-33 146.4 420 33.1
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 5.1e-33 146.0 289 36.7
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 6.6e-33 145.6 285 38.2
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 6.6e-33 145.6 151 49.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.9e-32 144.1 426 30.8
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 3.3e-32 143.3 427 30.9
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 4.3e-32 142.9 275 37.1
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 9.6e-32 141.7 364 34.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.1e-31 140.6 229 39.3
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.6e-31 139.8 370 32.2
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.6e-31 139.8 433 31.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.7e-31 139.4 284 37.3
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 6.2e-31 139.0 433 30.5
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 8.1e-31 138.7 444 30.2
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-30 138.3 422 28.9
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.8e-30 137.5 293 36.9
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.8e-30 137.5 102 60.8
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.1e-30 136.7 285 33.3
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 4.0e-30 136.3 270 36.7
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.2e-30 136.0 286 37.1
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 1.5e-29 134.4 362 30.9
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.6e-29 133.7 275 36.4
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 2.6e-29 133.7 302 38.1
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 3.4e-29 133.3 435 27.6
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 3.4e-29 133.3 270 35.9
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 4.4e-29 132.9 272 34.6
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 2.2e-28 130.6 96 64.6
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 4.9e-28 129.4 106 55.7
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.4e-27 127.9 106 55.7
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.4e-27 127.9 106 55.7
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.9e-24 117.5 385 29.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.6e-23 113.2 339 31.9
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 1.2e-21 108.2 251 33.9
RcHm_v2.0_Chr1g0333501 Rosa chinensis HOM05D004237 ORTHO05D005002 4.9e-20 102.8 78 66.7
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 3.6e-15 86.7 164 37.2
Peaxi162Scf00013g03225 Petunia axillaris HOM05D004237 ORTHO05D005002 1.5e-13 81.3 43 88.4


User provided reference genes

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