Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 5.9e-178 627.5 332 100.0
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.4e-157 558.5 318 91.2
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.3e-156 556.6 318 90.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.9e-156 555.4 318 92.1
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 5.2e-150 534.6 318 89.3
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 8.9e-150 533.9 317 89.0
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.7e-148 529.6 318 88.4
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 5.5e-107 391.7 331 65.9
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 1.3e-105 387.1 268 73.9
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 6.7e-105 384.8 274 72.3
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 4.3e-104 382.1 272 72.8
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 4.3e-104 382.1 270 77.0
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 7.4e-104 381.3 287 69.3
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.3e-103 380.6 278 72.3
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.7e-103 380.2 272 72.8
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 2.2e-103 379.8 268 75.4
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 3.7e-103 379.0 268 73.1
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 3.7e-103 379.0 268 73.1
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 3.7e-103 379.0 272 72.8
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 4.8e-103 378.6 272 73.5
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 6.3e-103 378.3 278 72.3
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.1e-102 377.5 272 73.9
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 4.1e-102 375.6 272 72.8
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 6.9e-102 374.8 279 71.7
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.5e-101 373.6 269 76.2
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 2.6e-101 372.9 269 72.5
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 2.6e-101 372.9 322 67.7
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 3.4e-101 372.5 269 76.2
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 3.4e-101 372.5 297 67.0
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 4.5e-101 372.1 268 73.9
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 4.5e-101 372.1 263 74.9
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 5.9e-101 371.7 272 71.3
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 7.7e-101 371.3 270 76.7
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.7e-100 370.2 302 69.9
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.7e-100 370.2 279 70.3
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 2.2e-100 369.8 272 70.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 2.9e-100 369.4 265 73.2
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 6.5e-100 368.2 267 72.3
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 6.5e-100 368.2 269 71.7
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 6.5e-100 368.2 272 74.6
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 8.5e-100 367.9 313 65.8
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 8.5e-100 367.9 269 74.7
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 1.1e-99 367.5 268 73.1
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 1.4e-99 367.1 273 71.8
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.4e-99 367.1 317 68.1
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.5e-99 366.3 270 75.2
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.2e-99 365.5 269 74.7
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 5.5e-99 365.2 265 73.2
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 9.4e-99 364.4 324 67.0
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.2e-98 364.0 274 70.1
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.1e-98 363.2 268 73.5
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 2.7e-98 362.8 269 72.1
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 3.6e-98 362.5 273 71.4
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 6.1e-98 361.7 275 69.5
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 6.1e-98 361.7 269 71.7
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.0e-97 360.9 268 72.4
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 1.8e-97 360.1 268 73.5
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 2.3e-97 359.8 270 70.4
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.3e-97 359.8 303 68.6
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 3.9e-97 359.0 268 72.0
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 5.1e-97 358.6 268 73.1
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 8.8e-97 357.8 297 68.0
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 8.8e-97 357.8 268 75.0
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.5e-96 357.1 303 64.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 2.0e-96 356.7 323 65.6
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.7e-95 353.6 319 62.1
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 6.3e-95 351.7 283 69.6
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 6.3e-95 351.7 283 69.6
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 2.4e-94 349.7 279 66.7
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 2.4e-94 349.7 324 63.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 6.9e-94 348.2 266 69.9
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.2e-93 347.4 325 63.1
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.2e-93 347.4 323 63.8
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 2.0e-93 346.7 268 70.1
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 2.0e-93 346.7 269 71.7
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 4.5e-93 345.5 270 68.1
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 4.5e-93 345.5 282 69.1
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 1.0e-92 344.4 243 72.8
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 3.8e-92 342.4 270 67.4
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 5.0e-92 342.0 269 69.5
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 6.5e-92 341.7 265 71.7
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 8.5e-92 341.3 283 68.9
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 9.4e-91 337.8 269 70.6
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.2e-90 337.4 302 61.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 4.7e-90 335.5 298 63.4
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 4.7e-90 335.5 298 63.4
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 5.2e-89 332.0 234 75.2
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 9.7e-88 327.8 275 64.4
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 1.1e-86 324.3 269 65.4
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.4e-86 323.9 269 65.8
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 5.3e-86 322.0 290 63.8
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 7.0e-86 321.6 273 64.1
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 4.5e-85 318.9 267 65.5
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 1.9e-83 313.5 271 64.2
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 2.5e-83 313.2 284 62.0
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 1.6e-82 310.5 264 60.6
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 6.1e-82 308.5 262 62.6
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 4.0e-81 305.8 236 70.8
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 2.6e-80 303.1 268 62.7
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 1.1e-78 297.7 258 62.4
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.0e-78 295.0 218 72.0
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 7.0e-78 295.0 240 65.4
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 6.5e-76 288.5 272 63.2
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 1.1e-75 287.7 270 61.5
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.7e-74 283.1 220 71.8
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 5.2e-73 278.9 235 63.0
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.9e-67 260.4 167 77.2
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 1.0e-65 254.6 245 56.3
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 4.0e-65 252.7 232 61.6
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 2.9e-60 236.5 327 47.7
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 2.5e-59 233.4 185 69.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 1.2e-58 231.1 172 69.2
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 4.6e-53 212.6 183 67.2
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 4.0e-41 172.9 150 62.0
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 3.5e-37 159.8 180 54.4
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 4.7e-34 149.4 265 40.0
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 2.6e-24 117.1 81 72.8
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.7e-21 107.1 122 51.6
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.2e-15 87.4 83 59.0
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 1.4e-14 84.7 83 57.8
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 2.4e-14 84.0 83 59.0
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 4.5e-08 63.2 66 51.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.7e-07 61.2 66 51.5


User provided reference genes

Program Settings