Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 1.6e-149 533.1 287 100.0
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.5e-115 420.2 289 81.7
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 1.6e-114 416.8 299 78.6
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 3.6e-114 415.6 285 77.5
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 3.8e-111 405.6 268 81.7
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 2.3e-108 396.4 285 74.4
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.8e-105 386.7 285 71.2
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.0e-100 369.4 281 70.1
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 9.6e-99 364.4 286 68.2
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.3e-98 364.0 291 74.2
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 4.5e-96 355.5 299 64.9
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.8e-95 352.4 286 66.4
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.2e-93 347.4 259 76.1
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 7.9e-93 344.7 289 69.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.0e-92 342.8 323 60.1
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 3.0e-92 342.8 323 60.1
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 2.6e-88 329.7 233 73.0
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 5.8e-88 328.6 291 65.3
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.5e-86 323.2 285 62.8
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 3.9e-84 315.8 324 58.6
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.9e-83 313.5 306 58.5
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.9e-83 313.5 287 61.0
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.6e-82 310.5 289 59.9
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 6.2e-82 308.5 296 61.8
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.4e-81 307.4 288 60.4
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.2e-80 304.3 293 60.4
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 5.8e-80 302.0 292 59.6
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 7.6e-80 301.6 285 60.7
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 2.2e-79 300.1 295 60.3
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.5e-78 296.6 280 62.1
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.8e-76 290.4 291 56.7
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.3e-76 290.0 291 56.7
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 5.1e-76 288.9 298 57.4
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.1e-76 288.9 276 62.3
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 6.7e-76 288.5 305 56.1
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.1e-75 287.7 292 57.2
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.9e-75 287.0 291 56.4
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.4e-73 280.0 287 54.7
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 9.0e-73 278.1 298 55.4
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 1.5e-72 277.3 281 55.9
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 2.0e-72 276.9 289 56.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.4e-70 270.8 283 55.8
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 1.4e-70 270.8 313 52.7
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 2.5e-70 270.0 290 56.9
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.5e-70 270.0 283 56.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-70 269.6 283 55.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 7.2e-70 268.5 309 52.8
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 9.4e-70 268.1 283 55.1
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 9.4e-70 268.1 283 55.1
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 1.2e-69 267.7 281 54.4
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 2.1e-69 266.9 299 54.5
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 2.1e-69 266.9 288 54.9
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 2.7e-69 266.5 294 60.9
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.7e-69 266.5 284 54.9
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 4.6e-69 265.8 287 54.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 6.1e-69 265.4 285 53.0
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.1e-69 265.4 283 55.1
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 7.9e-69 265.0 291 55.0
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 1.4e-68 264.2 301 54.8
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 6.7e-68 261.9 287 53.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 2.0e-67 260.4 299 53.2
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 2.0e-67 260.4 299 53.5
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.5e-67 260.0 279 56.6
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 3.3e-67 259.6 284 54.9
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 3.3e-67 259.6 291 54.6
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 4.3e-67 259.2 291 54.0
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 5.7e-67 258.8 268 54.5
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 9.7e-67 258.1 288 55.2
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.2e-66 256.9 287 51.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 2.2e-66 256.9 299 52.8
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.2e-66 256.9 203 66.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 3.7e-66 256.1 288 52.8
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 1.4e-65 254.2 290 51.7
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.1e-65 253.1 290 55.2
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.1e-65 253.1 292 54.1
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 9.1e-65 251.5 298 57.0
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 5.9e-64 248.8 290 53.4
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.0e-63 248.1 284 53.9
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 5.0e-63 245.7 297 50.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 5.0e-63 245.7 290 50.3
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 1.1e-62 244.6 293 52.2
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 1.4e-62 244.2 287 49.5
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.9e-62 243.8 287 50.9
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 5.5e-62 242.3 284 52.8
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 7.2e-62 241.9 293 51.5
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 2.7e-61 240.0 287 50.9
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 4.7e-61 239.2 302 48.7
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 4.7e-61 239.2 287 51.2
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 6.1e-61 238.8 288 52.1
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 7.9e-61 238.4 290 53.1
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 7.9e-61 238.4 283 50.9
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.8e-60 237.3 302 48.0
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 3.9e-60 236.1 290 51.0
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 3.9e-60 236.1 290 51.0
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 6.7e-60 235.3 251 56.2
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 8.8e-60 235.0 289 51.6
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 8.8e-60 235.0 287 51.9
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 4.4e-59 232.6 287 49.8
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 4.4e-59 232.6 287 51.2
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 7.4e-59 231.9 287 49.5
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.4e-59 231.9 226 58.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 1.7e-58 230.7 294 50.3
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 4.8e-58 229.2 286 49.7
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 6.3e-58 228.8 333 43.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-57 228.0 223 58.3
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 1.4e-57 227.6 293 49.5
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.4e-57 227.6 223 58.3
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.8e-57 227.3 293 49.5
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 1.8e-57 227.3 168 69.6
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 7.0e-57 225.3 294 53.4
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 9.1e-57 224.9 179 67.0
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.2e-56 224.6 286 51.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.5e-56 224.2 293 49.8
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 2.0e-56 223.8 283 48.1
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 2.0e-56 223.8 287 50.9
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 2.0e-56 223.8 294 49.3
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 2.6e-56 223.4 294 49.3
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.3e-55 221.1 294 48.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.2e-55 220.3 287 50.2
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 6.5e-55 218.8 289 50.2
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.1e-54 218.0 283 48.8
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.5e-54 217.6 289 49.1
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.9e-54 217.2 293 49.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 2.5e-54 216.9 294 52.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 2.1e-53 213.8 295 46.1
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.8e-52 210.7 294 45.6
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 7.5e-51 205.3 180 62.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.7e-50 204.1 293 49.1
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 6.3e-50 202.2 263 50.2
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 2.4e-49 200.3 168 63.7
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 7.0e-49 198.7 283 46.6
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.0e-47 192.6 288 43.8
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.2e-46 189.9 293 44.4
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 3.2e-46 189.9 245 49.0
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 5.5e-46 189.1 119 73.1
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.4e-44 184.5 289 42.6
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.0e-44 183.3 167 60.5
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 4.8e-42 176.0 287 42.9
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.7e-40 170.2 182 52.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.0e-39 168.3 289 42.6
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.5e-38 163.7 285 38.2
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 1.6e-37 161.0 118 67.8
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 1.5e-35 154.5 237 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.3e-34 148.7 118 62.7
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 8.3e-34 148.7 118 62.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.9e-32 142.5 121 60.3
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.6e-31 139.0 165 49.7
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.1e-29 134.0 117 59.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.1e-29 134.0 117 59.8
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 5.2e-28 129.4 294 36.4
Lsat_1_v5_gn_3_83040 Lactuca sativa HOM05D004323 ORTHO05D005140 1.4e-25 121.3 151 51.0
CSS0012754 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.3e-23 114.8 135 56.3
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 8.6e-23 112.1 75 73.3
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 3.3e-22 110.2 119 45.4
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 5.2e-20 102.8 181 42.0
Duzib138G1259 Durio zibethinus HOM05D004323 ORTHO05D005140 3.9e-15 86.7 150 45.3
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 1.6e-13 81.3 130 45.4
Nn091s42875 Nelumbo nucifera HOM05D004323 ORTHO05D005140 8.9e-12 75.5 94 53.2
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 4.4e-11 73.2 55 61.8
QL02p048579 Quercus lobata HOM05D004323 ORTHO05D005140 8.3e-10 68.9 103 42.7
Sed0022868 Sechium edule HOM05D004323 ORTHO05D005140 1.0e-07 62.0 138 35.5
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 6.6e-07 59.3 46 60.9


User provided reference genes

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