Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.9e-160 568.5 295 100.0
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 1.0e-128 463.8 296 82.1
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 2.2e-128 462.6 294 82.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.5e-111 406.0 299 72.6
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 7.3e-103 377.9 294 70.1
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 6.6e-88 328.2 275 66.2
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 7.6e-84 314.7 304 61.8
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 5.4e-74 282.0 311 52.4
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 3.5e-73 279.3 302 53.6
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 8.7e-72 274.6 310 52.3
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.2e-65 254.2 298 48.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.1e-65 253.4 319 48.6
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.1e-65 253.4 319 48.6
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.7e-65 253.1 296 48.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.7e-65 253.1 328 47.0
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 6.0e-65 251.9 315 48.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.9e-64 249.2 319 48.0
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.1e-64 248.8 312 44.6
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.1e-63 247.7 310 46.5
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.1e-62 243.4 307 45.6
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.1e-61 241.1 308 46.1
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.4e-61 240.0 313 47.0
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 9.0e-61 238.0 305 43.6
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 1.2e-60 237.7 310 45.2
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-60 237.3 315 44.4
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 3.4e-60 236.1 304 47.4
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 3.4e-60 236.1 308 43.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 9.9e-60 234.6 329 44.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.1e-58 231.1 292 45.5
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.4e-58 230.7 308 43.5
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 1.4e-58 230.7 316 45.6
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.5e-58 229.9 299 46.2
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 5.5e-58 228.8 316 42.4
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.6e-57 227.3 291 46.4
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 2.1e-57 226.9 309 45.0
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.1e-57 226.9 317 47.0
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 7.9e-57 224.9 296 43.6
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.0e-56 224.6 296 48.0
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 3.9e-56 222.6 292 44.2
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 3.9e-56 222.6 307 44.3
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.9e-55 220.3 299 43.1
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 2.5e-55 219.9 308 44.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.5e-55 219.9 310 42.3
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.4e-55 218.4 303 42.9
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.4e-53 213.4 294 42.5
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 3.1e-53 213.0 299 42.1
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 4.0e-53 212.6 295 43.7
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 6.9e-53 211.8 295 44.4
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.2e-52 211.1 303 39.6
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 2.0e-52 210.3 294 44.9
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 5.8e-52 208.8 277 44.8
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 7.6e-52 208.4 315 39.4
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.6e-52 208.4 315 39.4
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 7.6e-52 208.4 315 39.7
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 7.6e-52 208.4 337 39.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.9e-51 206.5 308 40.3
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.9e-51 206.5 314 41.1
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 3.8e-51 206.1 360 38.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 4.9e-51 205.7 303 41.9
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 6.5e-51 205.3 311 40.5
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 6.5e-51 205.3 302 41.1
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.9e-50 203.8 296 41.2
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 2.5e-50 203.4 303 42.9
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.2e-50 202.6 304 40.5
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 5.5e-50 202.2 375 37.1
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 7.1e-50 201.8 304 42.1
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 7.1e-50 201.8 293 43.0
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 9.3e-50 201.4 295 42.4
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 4.6e-49 199.1 298 41.3
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 4.6e-49 199.1 293 43.0
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 6.1e-49 198.7 302 40.4
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 7.9e-49 198.4 317 38.5
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 7.9e-49 198.4 299 42.1
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.0e-48 198.0 303 40.9
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 1.0e-48 198.0 331 37.8
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 2.3e-48 196.8 291 43.6
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.0e-48 196.4 331 39.3
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.1e-48 195.7 318 43.4
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 5.1e-48 195.7 302 39.7
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.7e-48 195.3 319 38.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 8.7e-48 194.9 320 38.1
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 2.5e-47 193.4 299 40.8
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.5e-47 193.4 335 38.8
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 5.7e-47 192.2 350 37.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 5.7e-47 192.2 293 41.0
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 2.8e-46 189.9 293 38.6
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 2.8e-46 189.9 293 38.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.2e-46 188.3 315 37.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 8.2e-46 188.3 302 38.7
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 1.1e-45 188.0 401 34.4
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 2.4e-45 186.8 311 38.3
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 5.3e-45 185.7 300 39.3
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 6.9e-45 185.3 310 39.4
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 9.0e-45 184.9 288 41.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-44 184.5 293 39.6
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.2e-44 184.5 294 38.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.9e-44 182.2 300 39.7
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 2.2e-43 180.3 300 38.3
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.9e-42 177.2 333 35.4
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 4.2e-42 176.0 303 35.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 6.1e-41 172.2 317 36.0
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 8.8e-40 168.3 302 37.7
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 2.2e-38 163.7 296 37.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.8e-38 163.3 286 38.1
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.1e-37 159.5 227 41.9
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 5.3e-37 159.1 318 38.4
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 9.1e-37 158.3 294 37.8
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.0e-36 157.1 302 35.8
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 3.4e-36 156.4 322 35.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 5.9e-36 155.6 299 37.1
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.0e-31 140.6 217 41.0
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.7e-31 139.0 214 38.3
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.3e-30 137.9 207 42.5
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.1e-29 134.8 238 40.3
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 2.4e-29 133.7 292 32.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 3.1e-29 133.3 218 40.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 1.3e-27 127.9 210 40.5
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.1e-23 114.8 317 31.5
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.3e-22 111.3 225 34.7
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 2.8e-22 110.2 200 36.0
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 8.2e-22 108.6 94 53.2
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 5.3e-21 105.9 243 30.9
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 9.1e-21 105.1 223 34.1
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 3.8e-19 99.8 347 27.1
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 5.0e-19 99.4 141 39.0
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.5e-18 95.9 289 27.7
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 6.1e-17 92.4 217 30.4
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.8e-16 90.9 165 37.6
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.2e-15 88.2 233 30.0
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.2e-14 84.0 339 25.1
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.1e-13 81.6 156 35.9
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 1.8e-13 80.9 70 57.1
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 2.4e-13 80.5 321 27.4
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 9.1e-13 78.6 126 40.5
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 5.9e-12 75.9 172 32.6
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 7.7e-12 75.5 124 34.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.7e-11 74.3 203 30.5
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.1e-10 71.6 259 26.6
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-10 71.2 55 67.3
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 2.5e-10 70.5 316 26.6
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 6.1e-09 65.9 101 35.6
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 2.0e-07 60.8 95 32.6
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 9.8e-07 58.5 181 27.6
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.2e-06 57.4 92 38.0
FAN10G4034 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.2e-06 57.4 161 32.9
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 2.8e-06 57.0 72 40.3
FAN06G1478 Fragaria x ananassa HOM05D021264 ORTHO05D022594 8.3e-06 55.5 163 31.3


User provided reference genes

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