Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 3954.4 2122 100.0
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 3573.1 2162 89.9
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 3462.9 2162 87.7
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3329.3 2209 82.9
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 3077.3 2246 77.2
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 3034.2 2225 77.3
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2393.2 2019 64.2
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2357.8 1726 70.6
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2352.0 1872 66.7
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2336.2 1895 65.0
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2317.0 1874 66.1
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2298.1 2117 59.7
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2283.8 1881 64.3
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2273.8 1904 63.2
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2253.4 1917 62.5
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2246.1 1883 63.8
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2241.5 1915 62.4
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2241.1 2070 59.5
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2241.1 1912 62.8
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2239.5 1927 61.9
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2236.1 1851 64.1
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2234.5 1926 62.3
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2234.5 1914 62.5
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2234.1 2131 58.1
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2224.5 1911 62.1
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2207.2 2084 58.5
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2205.3 2128 57.9
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2202.2 1869 63.7
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2199.1 1919 61.3
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2187.9 1879 62.2
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2176.7 1882 62.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2174.4 1857 62.6
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2174.4 1875 61.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2161.3 1932 61.0
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2157.1 1884 61.8
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2152.5 1904 60.3
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2138.6 1915 60.1
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2130.1 2120 56.4
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2125.1 1914 59.4
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2124.7 2214 55.4
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2110.1 1909 59.2
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2109.0 1892 59.7
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2105.9 1916 59.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2103.9 1925 59.4
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2094.7 1885 58.8
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2094.3 1804 62.8
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2091.6 1947 57.5
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2073.1 1471 72.5
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2072.7 1886 58.8
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2072.7 1901 59.3
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2067.4 1876 59.1
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2063.9 2081 55.3
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2036.9 1979 55.8
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2019.2 1906 58.0
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2016.9 1901 56.9
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2002.6 1913 57.1
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 1995.7 2035 55.2
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 1976.1 1940 57.1
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1973.7 1892 57.2
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 1973.7 1892 57.2
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 1969.1 1941 56.9
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 1966.8 1902 57.6
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 1959.9 2074 52.7
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1954.1 1911 56.0
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1946.4 2111 52.9
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 1946.0 2113 52.8
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 1939.1 2110 52.8
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 1938.7 1921 55.8
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 1937.5 1922 55.9
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 1934.5 2098 53.0
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 1926.4 1836 57.2
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1862.8 1766 59.0
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1853.6 2979 41.1
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 1835.1 1291 72.9
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1650.6 1621 56.3
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1622.8 1886 49.4
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1618.2 1942 48.8
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1605.9 1698 52.7
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1562.7 1516 55.9
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1441.4 966 76.0
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1424.8 1873 45.6
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1377.8 1843 43.5
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1372.5 1351 55.1
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1326.2 1949 42.1
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1199.5 1561 45.3
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1150.6 1909 39.5
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1099.0 1879 38.5
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 2.2e-310 1070.1 1934 36.1
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.7e-302 1043.9 849 64.9
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 7.5e-298 1028.5 1348 46.8
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 2.9e-297 1026.5 956 57.2
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 3.3e-285 986.5 744 66.5
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 6.9e-267 925.6 1273 46.2
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 5.1e-262 909.4 989 52.7
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 2.2e-257 894.0 672 66.7
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 7.7e-218 762.7 675 58.4
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 1.2e-213 748.8 774 54.3
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 5.0e-209 733.4 911 46.3
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.6e-207 728.4 876 48.9
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 5.2e-182 643.7 888 45.3
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 1.2e-178 632.5 788 47.0
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.0e-177 629.4 540 61.1
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 9.3e-155 553.1 563 54.0
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.0e-112 412.5 279 73.8
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.7e-105 387.5 266 75.2
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 9.7e-104 383.6 322 62.1
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.1e-102 380.2 264 72.7
PGSC0003DMG400012673 Solanum tuberosum HOM05D003845 ORTHO05D004161 4.5e-101 374.8 362 77.3
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 3.0e-97 362.1 287 66.2
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 8.3e-95 354.0 775 32.9
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 1.8e-94 352.8 301 60.1
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 5.5e-91 341.3 272 65.4
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 2.5e-83 315.8 224 70.1
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 1.5e-80 306.6 251 61.4
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.3e-79 303.5 274 61.3
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 3.7e-79 302.0 1395 26.9
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 6.3e-79 301.2 461 39.3
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 1.8e-73 283.1 314 51.0
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 4.6e-69 268.5 432 41.9
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.3e-63 250.4 317 49.8
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.3e-60 239.6 152 77.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.3e-55 223.8 152 76.3
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.3e-52 213.8 157 66.9
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 3.0e-52 212.6 202 61.4
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 3.0e-52 212.6 202 61.4
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 5.1e-52 211.8 180 66.1
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 5.1e-52 211.8 187 63.6
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 4.4e-48 198.7 771 26.6
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.3e-44 187.2 136 69.9
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 5.6e-43 181.8 342 36.8
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 2.9e-39 169.5 129 72.1
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 1.0e-36 161.0 147 60.5
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.3e-33 148.7 195 44.1
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.7e-31 143.7 316 33.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.2e-30 139.4 136 52.2
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 1.8e-28 133.7 78 91.0
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 3.3e-27 129.4 138 56.5
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 3.1e-25 122.9 397 26.7
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 3.2e-22 112.8 660 22.4
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.2e-21 110.9 491 26.1
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.6e-21 110.5 107 58.9
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-19 103.6 69 79.7
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.9e-19 103.6 75 68.0
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 2.1e-18 100.1 75 69.3
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 8.2e-18 98.2 61 70.5
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 4.1e-17 95.9 252 35.7
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 6.9e-17 95.1 136 45.6
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.9e-16 92.0 64 65.6
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.9e-14 87.0 54 72.2
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 1.9e-14 87.0 57 82.5
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 1.2e-13 84.3 92 54.3
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 2.7e-13 83.2 54 79.6
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 6.1e-13 82.0 55 63.6
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.8e-12 80.5 70 62.9
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 3.0e-12 79.7 51 80.4
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.1e-11 77.8 66 68.2
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.3e-11 76.3 100 53.0
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-09 71.2 42 78.6
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.1e-09 69.7 57 70.2
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 1.2e-08 67.8 110 34.5
Lsat_1_v5_gn_1_87981 Lactuca sativa HOM05D003845 ORTHO05D004161 1.0e-07 64.7 48 62.5
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 6.5e-07 62.0 222 24.3
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.5e-06 60.1 68 50.0
Lsat_1_v5_gn_8_96981 Lactuca sativa HOM05D001957 ORTHO05D004161 7.2e-06 58.5 41 65.9


User provided reference genes

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