Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G623.91 Capsicum annuum HOM05D002887 ORTHO05D003159 1.1e-110 403.3 208 100.0
CAN.G943.8 Capsicum annuum HOM05D002887 ORTHO05D003159 2.2e-106 389.0 208 96.2
CAN.G623.82 Capsicum annuum HOM05D002887 ORTHO05D003159 2.9e-106 388.7 208 96.6
CAN.G623.97 Capsicum annuum HOM05D002887 ORTHO05D003159 1.4e-71 273.5 189 78.3
CAN.G943.15 Capsicum annuum HOM05D002887 ORTHO05D003159 1.4e-71 273.5 189 78.3
CAN.G943.17 Capsicum annuum HOM05D002887 ORTHO05D003159 1.4e-71 273.5 189 78.3
CAN.G623.94 Capsicum annuum HOM05D002887 ORTHO05D003159 2.0e-70 269.6 145 95.9
CAN.G623.93 Capsicum annuum HOM05D002887 ORTHO05D003159 7.5e-70 267.7 180 80.0
CAN.G623.83 Capsicum annuum HOM05D002887 ORTHO05D003159 1.2e-67 260.4 189 76.7
CAN.G943.10 Capsicum annuum HOM05D002887 ORTHO05D003159 3.7e-61 238.8 188 71.3
CAN.G523.32 Capsicum annuum HOM05D002887 ORTHO05D003159 1.1e-60 237.3 189 69.8
CAN.G623.89 Capsicum annuum HOM05D002887 ORTHO05D003159 2.3e-55 219.5 188 66.0
CAN.G943.12 Capsicum annuum HOM05D002887 ORTHO05D003159 4.1e-52 208.8 191 63.4
Nitab4.5_0000294g0200 Nicotiana tabacum HOM05D002887 ORTHO05D003159 2.7e-51 206.1 185 63.2
Peaxi162Scf00232g00091 Petunia axillaris HOM05D002887 ORTHO05D003159 3.1e-47 192.6 185 62.7
CAN.G623.84 Capsicum annuum HOM05D002887 ORTHO05D003159 4.4e-46 188.7 97 95.9
CAN.G623.87 Capsicum annuum HOM05D002887 ORTHO05D003159 4.4e-46 188.7 188 61.2
Nitab4.5_0001235g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 9.8e-46 187.6 187 57.8
PGSC0003DMG400022247 Solanum tuberosum HOM05D002887 ORTHO05D003159 2.9e-45 186.0 152 65.8
CAN.G623.99 Capsicum annuum HOM05D002887 ORTHO05D003159 2.3e-42 176.4 199 56.8
Solyc07g066240.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 1.5e-41 173.7 143 64.3
Sopen07g034420 Solanum pennellii HOM05D002887 ORTHO05D003159 1.9e-41 173.3 143 64.3
Oeu052878.1 Olea europaea HOM05D002887 ORTHO05D003159 3.7e-37 159.1 192 52.6
GSVIVG01014858001 Vitis vinifera HOM05D002887 ORTHO05D003159 6.0e-35 151.8 195 48.2
QL08p000165 Quercus lobata HOM05D002887 ORTHO05D003159 5.1e-34 148.7 190 48.4
Cfa016970 Carpinus fangiana HOM05D002887 ORTHO05D003159 2.5e-33 146.4 191 48.2
Migut.H01703 Erythranthe guttata HOM05D002887 ORTHO05D003159 9.5e-33 144.4 186 50.0
Haze_09925 Corylus avellana HOM05D002887 ORTHO05D003159 3.1e-31 139.4 191 47.1
Actinidia37103 Actinidia chinensis HOM05D002887 ORTHO05D003159 6.8e-31 138.3 185 49.7
Lj1C902G8 Lonicera japonica HOM05D002887 ORTHO05D003159 6.8e-31 138.3 191 44.5
Atru.chr2.3909 Acer truncatum HOM05D002887 ORTHO05D003159 1.5e-30 137.1 196 44.9
Ciclev10007786m.g Citrus clementina HOM05D002887 ORTHO05D003159 1.3e-29 134.0 189 47.6
TWI39G1273 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 3.8e-29 132.5 142 54.9
CSS0039257 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 8.4e-29 131.3 182 45.6
CARHR045290 Cardamine hirsuta HOM05D002887 ORTHO05D003159 8.4e-29 131.3 169 47.9
MD11G1047600 Malus domestica HOM05D002887 ORTHO05D003159 1.1e-28 131.0 138 55.8
CSS0049070 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 2.4e-28 129.8 136 54.4
RcHm_v2.0_Chr5g0074291 Rosa chinensis HOM05D002887 ORTHO05D003159 3.2e-28 129.4 189 46.0
Prupe.6G036600 Prunus persica HOM05D002887 ORTHO05D003159 9.2e-28 127.9 187 44.9
ClCG09G021800 Citrullus lanatus HOM05D002887 ORTHO05D003159 3.5e-27 125.9 208 41.3
HanXRQChr11g0335231 Helianthus annuus HOM05D002887 ORTHO05D003159 6.0e-27 125.2 187 43.9
CsaV3_7G021230 Cucumis sativus L. HOM05D002887 ORTHO05D003159 1.0e-26 124.4 215 39.5
MELO3C013232.2 Cucumis melo HOM05D002887 ORTHO05D003159 1.3e-26 124.0 215 39.5
CAN.G623.88 Capsicum annuum HOM05D002887 ORTHO05D003159 2.3e-26 123.2 163 49.7
CAN.G943.7 Capsicum annuum HOM05D002887 ORTHO05D003159 3.9e-26 122.5 79 79.7
FAN21G1274 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.5e-25 120.6 191 42.9
FAN25G0222 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.9e-25 120.2 191 42.4
FAN11G2314 Fragaria x ananassa HOM05D002887 ORTHO05D003159 2.5e-25 119.8 191 42.4
FAN16G2949 Fragaria x ananassa HOM05D002887 ORTHO05D003159 4.3e-25 119.0 179 44.7
Sed0024070 Sechium edule HOM05D002887 ORTHO05D003159 1.2e-24 117.5 140 49.3
CAN.G623.100 Capsicum annuum HOM05D002887 ORTHO05D003159 1.1e-23 114.4 146 51.4
ECA236G4850 Erigeron canadensis HOM05D002887 ORTHO05D003159 3.1e-23 112.8 143 45.5
Cc05_g15820 Coffea canephora HOM05D002887 ORTHO05D003159 1.2e-22 110.9 194 39.2
Manes.06G049300 Manihot esculenta HOM05D002887 ORTHO05D003159 2.0e-22 110.2 195 41.0
Dinv19635 Davidia involucrata HOM05D002887 ORTHO05D003159 3.4e-22 109.4 106 56.6
Zm00001eb199550 Zea mays HOM05D002887 ORTHO05D003159 9.9e-22 107.8 132 45.5
CAN.G588.111 Capsicum annuum HOM05D002887 ORTHO05D003159 4.2e-20 102.4 138 42.0
HPP92_018919 Vanilla planifolia HOM05D002887 ORTHO05D003159 4.2e-20 102.4 156 41.7
Peaxi162Scf00362g00430 Petunia axillaris HOM05D002887 ORTHO05D003159 5.4e-20 102.1 138 42.0
MSTRG.14532 Avicennia marina HOM05D002887 ORTHO05D003159 7.1e-20 101.7 153 48.4
vmacro09794 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 7.1e-20 101.7 107 54.2
SGA_v2.0_scaffold32G13321 Striga asiatica HOM05D002887 ORTHO05D003159 1.6e-19 100.5 139 41.7
Cc09_g10430 Coffea canephora HOM05D002887 ORTHO05D003159 6.0e-19 98.6 165 38.8
DCAR_016809 Daucus carota HOM05D002887 ORTHO05D003159 6.0e-19 98.6 107 52.3
Nitab4.5_0003679g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 7.8e-19 98.2 164 37.8
Rhsim04G0006800 Rhododendron simsii HOM05D002887 ORTHO05D003159 1.0e-18 97.8 148 45.3
Solyc01g111890.3 Solanum lycopersicum HOM05D002887 ORTHO05D003159 1.0e-18 97.8 164 37.2
Sopen01g053930 Solanum pennellii HOM05D002887 ORTHO05D003159 1.0e-18 97.8 164 37.2
AT1G55590 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 2.3e-18 96.7 105 54.3
Nitab4.5_0004557g0010 Nicotiana tabacum HOM05D002887 ORTHO05D003159 3.0e-18 96.3 164 37.2
unitig_37.g12833 Utricularia gibba HOM05D002887 ORTHO05D003159 3.0e-18 96.3 167 38.9
DCAR_022829 Daucus carota HOM05D002887 ORTHO05D003159 3.9e-18 95.9 166 38.6
PGSC0003DMG400018645 Solanum tuberosum HOM05D002887 ORTHO05D003159 3.9e-18 95.9 164 36.6
Carub.0001s4411 Capsella rubella HOM05D002887 ORTHO05D003159 5.1e-18 95.5 105 53.3
SGA_v2.0_scaffold49G18166 Striga asiatica HOM05D002887 ORTHO05D003159 5.1e-18 95.5 141 46.1
HPP92_003489 Vanilla planifolia HOM05D002887 ORTHO05D003159 5.1e-18 95.5 147 38.8
HPP92_026887 Vanilla planifolia HOM05D002887 ORTHO05D003159 5.1e-18 95.5 147 38.8
AL1G63640 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 6.6e-18 95.1 105 53.3
BcaC08g43637 Brassica carinata HOM05D002887 ORTHO05D003159 6.6e-18 95.1 146 43.2
C06p10530 Brassica napus HOM05D002887 ORTHO05D003159 6.6e-18 95.1 146 43.2
BolC6t36133H Brassica oleracea HOM05D002887 ORTHO05D003159 6.6e-18 95.1 146 43.2
Aa31LG10G620 Aethionema arabicum HOM05D002887 ORTHO05D003159 8.7e-18 94.7 105 51.4
MSTRG.19965 Avicennia marina HOM05D002887 ORTHO05D003159 8.7e-18 94.7 148 39.2
Ah.01g023360 Amaranthus hybridus HOM05D002887 ORTHO05D003159 1.1e-17 94.4 139 39.6
A06p00120 Brassica napus HOM05D002887 ORTHO05D003159 1.1e-17 94.4 146 43.8
BraA06t23230Z Brassica rapa HOM05D002887 ORTHO05D003159 1.1e-17 94.4 146 43.8
Rhsim11G0194600 Rhododendron simsii HOM05D002887 ORTHO05D003159 1.5e-17 94.0 139 41.0
SalBow1G7852 Salvia bowleyana HOM05D002887 ORTHO05D003159 1.5e-17 94.0 145 39.3
Potri.011G169800 Populus trichocarpa HOM05D002887 ORTHO05D003159 1.9e-17 93.6 138 47.8
Sp1g41210 Schrenkiella parvula HOM05D002887 ORTHO05D003159 1.9e-17 93.6 105 52.4
CiPaw.05G086400 Carya illinoinensis HOM05D002887 ORTHO05D003159 3.3e-17 92.8 139 39.6
Thhalv10011328m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 3.3e-17 92.8 105 52.4
THA.LOC104804318 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 3.3e-17 92.8 139 40.3
Actinidia20539 Actinidia chinensis HOM05D002887 ORTHO05D003159 4.3e-17 92.4 165 37.6
FvH4_3g41370 Fragaria vesca HOM05D002887 ORTHO05D003159 4.3e-17 92.4 190 37.4
MBI14_g10260_MAGBIO Magnolia biondii HOM05D002887 ORTHO05D003159 4.3e-17 92.4 189 33.3
Oeu029657.1 Olea europaea HOM05D002887 ORTHO05D003159 4.3e-17 92.4 167 38.3
PGR142G2418 Punica granatum HOM05D002887 ORTHO05D003159 4.3e-17 92.4 138 41.3
Sabra11G0137200 Salix brachista HOM05D002887 ORTHO05D003159 4.3e-17 92.4 138 46.4
Gohir.A12G035800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 39.9
Gohir.D12G036800 Gossypium hirsutum HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 39.9
Gorai.008G038000 Gossypium raimondii HOM05D002887 ORTHO05D003159 5.6e-17 92.0 138 39.9
BcaB07g33199 Brassica carinata HOM05D002887 ORTHO05D003159 7.3e-17 91.7 138 44.9
Migut.B00042 Erythranthe guttata HOM05D002887 ORTHO05D003159 7.3e-17 91.7 167 37.7
Lsat_1_v5_gn_3_47320 Lactuca sativa HOM05D002887 ORTHO05D003159 7.3e-17 91.7 140 39.3
CSS0044899 Camellia sinensis var. sinensis HOM05D002887 ORTHO05D003159 1.3e-16 90.9 135 40.7
Sabra04G0120900 Salix brachista HOM05D002887 ORTHO05D003159 1.3e-16 90.9 135 41.5
arahy.Tifrunner.gnm1.ann1.DJ9YQ7 Arachis hypogaea HOM05D002887 ORTHO05D003159 1.6e-16 90.5 138 39.9
arahy.Tifrunner.gnm1.ann1.HJG5YQ Arachis hypogaea HOM05D002887 ORTHO05D003159 1.6e-16 90.5 138 39.9
Glyma.20G105000 Glycine max HOM05D002887 ORTHO05D003159 1.6e-16 90.5 139 38.8
SEGI_07697 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 1.6e-16 90.5 105 49.5
THA.LOC104810311 Tarenaya hassleriana HOM05D002887 ORTHO05D003159 2.1e-16 90.1 150 40.7
VMungo0720G3147 Vigna mungo HOM05D002887 ORTHO05D003159 2.1e-16 90.1 139 38.8
GSVIVG01023957001 Vitis vinifera HOM05D002887 ORTHO05D003159 2.1e-16 90.1 148 38.5
Eucgr.I01466 Eucalyptus grandis HOM05D002887 ORTHO05D003159 2.8e-16 89.7 138 40.6
CiPaw.06G119200 Carya illinoinensis HOM05D002887 ORTHO05D003159 4.8e-16 89.0 139 38.8
Ca_03284_v3 Cicer arietinum L. HOM05D002887 ORTHO05D003159 4.8e-16 89.0 138 38.4
Lalb_Chr06g0163831 Lupinus albus HOM05D002887 ORTHO05D003159 4.8e-16 89.0 166 36.7
Potri.009G139500 Populus trichocarpa HOM05D002887 ORTHO05D003159 4.8e-16 89.0 164 36.6
Cfa005310 Carpinus fangiana HOM05D002887 ORTHO05D003159 6.2e-16 88.6 139 38.1
ECA246G2827 Erigeron canadensis HOM05D002887 ORTHO05D003159 6.2e-16 88.6 173 35.3
Potri.004G179571 Populus trichocarpa HOM05D002887 ORTHO05D003159 6.2e-16 88.6 138 39.1
Manes.11G098300 Manihot esculenta HOM05D002887 ORTHO05D003159 8.1e-16 88.2 139 38.8
TWI75G1235 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 8.1e-16 88.2 148 39.9
CANSAT25G0878 Cannabis sativa HOM05D002887 ORTHO05D003159 1.1e-15 87.8 167 34.7
Haze_02083 Corylus avellana HOM05D002887 ORTHO05D003159 1.1e-15 87.8 139 38.1
TPR.G2454 Trifolium pratense HOM05D002887 ORTHO05D003159 1.1e-15 87.8 138 37.7
Prupe.8G170700 Prunus persica HOM05D002887 ORTHO05D003159 1.4e-15 87.4 139 37.4
vmacro02299 Vaccinium macrocarpon HOM05D002887 ORTHO05D003159 1.4e-15 87.4 162 37.0
Eucgr.J00763 Eucalyptus grandis HOM05D002887 ORTHO05D003159 2.4e-15 86.7 145 42.8
Lj5g0021290 Lotus japonicus HOM05D002887 ORTHO05D003159 2.4e-15 86.7 164 36.0
COL.COLO4_18011 Corchorus olitorius HOM05D002887 ORTHO05D003159 3.1e-15 86.3 164 37.8
Psat6g232960 Pisum sativum HOM05D002887 ORTHO05D003159 4.0e-15 85.9 135 38.5
Ciclev10028005m.g Citrus clementina HOM05D002887 ORTHO05D003159 6.9e-15 85.1 165 35.2
Medtr1g114010 Medicago truncatula HOM05D002887 ORTHO05D003159 6.9e-15 85.1 138 37.7
Phvul.007G016400 Phaseolus vulgaris HOM05D002887 ORTHO05D003159 9.0e-15 84.7 139 37.4
Lj5A175G92 Lonicera japonica HOM05D002887 ORTHO05D003159 3.4e-14 82.8 166 34.9
TWI79G0907 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 3.4e-14 82.8 144 37.5
Sed0003666 Sechium edule HOM05D002887 ORTHO05D003159 4.5e-14 82.4 139 36.7
ClCG02G003820 Citrullus lanatus HOM05D002887 ORTHO05D003159 5.8e-14 82.0 139 37.4
PGR119G2044 Punica granatum HOM05D002887 ORTHO05D003159 5.8e-14 82.0 104 44.2
Sed0001540 Sechium edule HOM05D002887 ORTHO05D003159 7.6e-14 81.6 136 39.7
Sed0016468 Sechium edule HOM05D002887 ORTHO05D003159 7.6e-14 81.6 136 39.7
MELO3C013321.2 Cucumis melo HOM05D002887 ORTHO05D003159 9.9e-14 81.3 139 36.7
CsaV3_7G001330 Cucumis sativus L. HOM05D002887 ORTHO05D003159 9.9e-14 81.3 139 37.4
Lsat_1_v5_gn_7_116000 Lactuca sativa HOM05D002887 ORTHO05D003159 3.8e-13 79.3 135 39.3
AagrBONN_evm.TU.Sc2ySwM_368.912 Anthoceros agrestis HOM05D002887 ORTHO05D003159 8.4e-13 78.2 135 37.8
ATR0661G100 Amborella trichopoda HOM05D002887 ORTHO05D003159 3.5e-11 72.8 106 43.4
SEGI_36055 Sequoiadendron giganteum HOM05D002887 ORTHO05D003159 3.5e-11 72.8 111 43.2
TWI79G0472 Tripterygium wilfordii HOM05D002887 ORTHO05D003159 3.5e-11 72.8 139 34.5
Hund00008 Selenicereus undatus HOM05D002887 ORTHO05D003159 7.9e-11 71.6 136 36.8
FAN27G1571 Fragaria x ananassa HOM05D002887 ORTHO05D003159 3.9e-10 69.3 139 36.0
TAR625G0093 Trochodendron aralioides HOM05D002887 ORTHO05D003159 6.7e-10 68.6 102 42.2
FAN15G2445 Fragaria x ananassa HOM05D002887 ORTHO05D003159 8.7e-10 68.2 102 43.1
CARHR107340 Cardamine hirsuta HOM05D002887 ORTHO05D003159 1.5e-09 67.4 102 40.2
FvH4_2g15790 Fragaria vesca HOM05D002887 ORTHO05D003159 1.5e-09 67.4 102 43.1
FAN24G2689 Fragaria x ananassa HOM05D002887 ORTHO05D003159 1.5e-09 67.4 102 43.1
Pp3c16_16630 Physcomitrium patens HOM05D002887 ORTHO05D003159 2.5e-09 66.6 106 42.5
Aa31LG8G14210 Aethionema arabicum HOM05D002887 ORTHO05D003159 3.3e-09 66.2 102 39.2
FAN20G1407 Fragaria x ananassa HOM05D002887 ORTHO05D003159 4.3e-09 65.9 102 42.2
Cpa.g.sc20.128 Carica papaya HOM05D002887 ORTHO05D003159 7.4e-09 65.1 112 38.4
AUR62012987 Chenopodium quinoa HOM05D002887 ORTHO05D003159 7.4e-09 65.1 102 40.2
RcHm_v2.0_Chr6g0279151 Rosa chinensis HOM05D002887 ORTHO05D003159 7.4e-09 65.1 102 40.2
Aqoxy6G01915 Aquilegia oxysepala HOM05D002887 ORTHO05D003159 1.3e-08 64.3 108 38.9
AUR62009999 Chenopodium quinoa HOM05D002887 ORTHO05D003159 1.3e-08 64.3 104 38.5
Sp3g30310 Schrenkiella parvula HOM05D002887 ORTHO05D003159 1.3e-08 64.3 102 39.2
PSO675G9002 Papaver somniferum HOM05D002887 ORTHO05D003159 1.6e-08 63.9 102 36.3
PSO541G1018 Papaver somniferum HOM05D002887 ORTHO05D003159 2.1e-08 63.5 102 36.3
Thhalv10022585m.g Eutrema salsugineum HOM05D002887 ORTHO05D003159 2.8e-08 63.2 102 38.2
Os03g0135400 Oryza sativa ssp. japonica HOM05D002887 ORTHO05D003159 4.8e-08 62.4 108 40.7
EL10Ac9g21324 Beta vulgaris HOM05D002887 ORTHO05D003159 6.2e-08 62.0 104 37.5
CDE05G0350 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 6.2e-08 62.0 102 39.2
Duzib132G0895 Durio zibethinus HOM05D002887 ORTHO05D003159 6.2e-08 62.0 112 38.4
Thecc.02G053100 Theobroma cacao HOM05D002887 ORTHO05D003159 8.1e-08 61.6 101 39.6
Carub.0003s3090 Capsella rubella HOM05D002887 ORTHO05D003159 1.4e-07 60.8 102 36.3
Nn6g31882 Nelumbo nucifera HOM05D002887 ORTHO05D003159 1.4e-07 60.8 166 30.1
AL3G49810 Arabidopsis lyrata HOM05D002887 ORTHO05D003159 1.8e-07 60.5 102 36.3
ECA236G2003 Erigeron canadensis HOM05D002887 ORTHO05D003159 1.8e-07 60.5 53 50.9
AT2G17020 Arabidopsis thaliana HOM05D002887 ORTHO05D003159 3.1e-07 59.7 102 36.3
CDE05G3170 Ceratophyllum demersum HOM05D002887 ORTHO05D003159 3.1e-07 59.7 102 38.2
HanXRQChr17g0543831 Helianthus annuus HOM05D002887 ORTHO05D003159 4.0e-07 59.3 104 36.5
MD05G1127000 Malus domestica HOM05D002887 ORTHO05D003159 5.3e-07 58.9 102 37.3
Atru.chr5.3466 Acer truncatum HOM05D002887 ORTHO05D003159 3.4e-06 56.2 100 36.0
BcaB07g31745 Brassica carinata HOM05D002887 ORTHO05D003159 7.6e-06 55.1 102 35.3


User provided reference genes

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