Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1696.4 865 100.0
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 1343.9 945 76.7
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 1341.6 945 76.6
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1337.8 959 74.6
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1325.5 934 76.4
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 1310.0 910 76.5
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 1261.9 689 92.5
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 1120.1 947 63.8
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 1106.7 947 62.4
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 1103.6 974 60.6
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 1103.2 953 61.6
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 1102.0 947 62.2
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 1098.6 945 62.8
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 1098.6 953 60.9
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 1097.4 944 62.7
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 1096.3 896 64.6
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 1095.1 945 62.0
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 1094.7 945 62.1
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 1092.0 888 65.3
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 1090.5 1001 60.7
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 1088.2 947 62.0
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1085.1 955 61.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 1081.2 951 61.3
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 1081.2 976 60.2
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 1080.9 952 62.0
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 1080.1 955 60.7
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1078.9 955 61.3
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 1076.6 949 61.9
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 5.9e-312 1074.7 952 61.0
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 5.9e-312 1074.7 951 61.2
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 5.9e-312 1073.9 949 61.5
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 1.8e-311 1072.4 949 61.7
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 1.8e-311 1072.4 949 61.6
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 2.4e-311 1072.0 949 61.6
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 7.1e-311 1070.5 949 61.4
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.5e-310 1069.3 948 61.0
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 2.2e-309 1065.4 947 60.7
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 1.9e-308 1062.4 689 76.5
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 9.3e-308 1060.1 942 60.8
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 6.0e-307 1057.4 949 60.5
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 7.9e-307 1057.0 967 59.8
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 3.9e-306 1054.7 954 60.0
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 4.3e-305 1051.2 949 60.3
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 5.7e-305 1050.8 945 59.6
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.6e-304 1049.3 689 75.8
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 2.6e-302 1042.0 949 59.4
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 4.5e-302 1041.2 949 60.7
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 4.5e-302 1041.2 945 59.5
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 5.9e-302 1040.8 953 59.3
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 5.9e-302 1040.8 998 58.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 1.3e-301 1039.6 947 59.1
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 1.1e-300 1036.6 947 59.1
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 9.4e-300 1033.5 946 59.8
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 3.6e-299 1031.6 953 59.3
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 6.7e-298 1027.3 946 58.8
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 1.1e-297 1026.5 689 74.5
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 9.7e-297 1023.5 945 58.9
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 1.7e-296 1022.7 946 58.6
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 1.7e-296 1022.7 689 73.1
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 8.2e-296 1020.4 945 58.3
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 1.1e-295 1020.0 689 74.2
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 1.4e-295 1019.6 944 58.7
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 2.4e-295 1018.8 947 59.6
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 2.0e-294 1015.8 952 57.2
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 4.5e-294 1014.6 948 58.5
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 4.5e-294 1014.6 947 59.0
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 4.5e-294 1014.6 947 58.9
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 7.7e-294 1013.8 946 59.0
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 2.9e-293 1011.9 947 58.5
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 8.5e-293 1010.4 947 58.7
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.9e-292 1009.2 691 73.5
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 2.5e-292 1008.8 947 57.7
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 5.5e-292 1007.7 946 58.6
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 5.5e-292 1007.7 954 57.9
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 7.2e-292 1007.3 948 59.0
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 9.4e-292 1006.9 946 58.5
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 1.2e-291 1006.5 946 58.4
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 2.7e-291 1005.4 947 58.4
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 3.6e-291 1005.0 946 58.0
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 5.1e-290 1001.1 946 58.4
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 5.1e-290 1001.1 1028 54.7
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 1.1e-289 1000.0 944 57.5
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 1.5e-289 999.6 954 57.5
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 2.6e-289 998.8 946 58.5
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 5.7e-289 997.7 945 56.8
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 9.7e-289 996.9 689 72.3
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 4.1e-287 991.5 946 58.1
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 5.9e-286 987.6 954 57.1
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 2.2e-285 985.7 954 57.0
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 1.4e-284 983.0 945 58.3
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 2.1e-283 979.2 945 57.7
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 5.2e-282 974.5 953 56.3
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 6.3e-280 967.6 970 57.4
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 2.9e-277 958.7 953 55.9
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 1.1e-276 956.8 901 59.0
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 9.1e-271 937.2 953 55.5
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 3.2e-268 928.7 920 56.2
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 4.2e-268 928.3 1073 50.2
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 2.5e-260 902.5 949 53.7
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 1.3e-253 880.2 945 53.1
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 4.3e-252 875.2 964 52.9
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 1.0e-250 870.5 963 51.1
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 4.4e-233 812.0 956 48.3
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.2e-195 685.3 715 56.2
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 2.0e-193 680.2 576 59.9
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 1.7e-192 677.2 441 73.9
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 1.3e-179 634.4 901 43.7
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 4.1e-162 576.2 970 38.0
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 5.5e-159 565.8 964 37.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 8.8e-157 558.5 695 44.5
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 1.9e-151 540.8 974 36.9
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.1e-150 537.3 701 45.5
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 1.8e-141 507.7 747 39.5
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 1.5e-140 504.6 987 35.2
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 5.6e-135 486.1 710 40.4
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 1.3e-131 474.9 696 40.8
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 3.2e-130 470.3 798 39.0
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 4.7e-118 429.9 705 38.3
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 1.4e-114 418.3 351 62.7
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.4e-114 416.4 403 52.6
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 5.4e-114 416.4 322 64.0
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 2.5e-95 354.4 251 74.9
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.3e-78 298.9 363 52.1
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 6.3e-70 270.0 345 47.2
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 3.1e-45 188.0 635 25.8
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.5e-43 179.9 712 25.6
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 1.6e-20 105.9 181 38.1
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 2.7e-20 105.1 65 81.5
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.5e-20 104.8 177 37.3
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.6e-20 104.4 181 36.5
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 8.6e-19 100.1 53 83.0
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 1.6e-17 95.9 67 74.6
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 2.3e-16 92.0 57 70.2
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.2e-15 89.7 593 21.6
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 7.8e-12 77.0 63 57.1
CAN.G802.8 Capsicum annuum HOM05D004450 ORTHO05D005491 1.1e-10 73.2 43 88.4
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 1.9e-10 72.4 284 26.4


User provided reference genes

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