Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.8e-143 511.9 254 100.0
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 9.3e-123 443.7 248 87.1
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 3.5e-122 441.8 248 87.9
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 4.9e-116 421.4 247 84.2
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 6.0e-114 414.5 230 87.8
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 1.0e-100 370.5 242 74.0
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 3.8e-100 368.6 246 71.1
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 3.6e-98 362.1 246 71.1
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 6.1e-98 361.3 247 70.4
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 1.4e-97 360.1 200 87.5
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.0e-97 359.0 247 69.2
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.0e-96 356.3 246 68.3
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.5e-96 355.9 201 87.1
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 9.7e-96 354.0 246 67.5
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 1.3e-95 353.6 186 92.5
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.2e-95 352.8 246 69.5
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 2.8e-95 352.4 243 68.7
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 2.8e-95 352.4 243 67.9
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 6.3e-95 351.3 243 67.9
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.1e-94 350.5 248 71.8
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 1.1e-94 350.5 245 69.8
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 1.4e-94 350.1 270 64.1
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 2.4e-94 349.4 243 68.7
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 2.4e-94 349.4 243 68.7
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 3.1e-94 349.0 243 67.1
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 4.1e-94 348.6 249 66.3
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 4.1e-94 348.6 243 67.1
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 4.1e-94 348.6 243 67.1
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 1.5e-93 346.7 246 67.1
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 2.6e-93 345.9 243 66.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 4.5e-93 345.1 242 67.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 5.9e-93 344.7 249 65.1
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 1.0e-92 344.0 243 66.7
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 1.0e-92 344.0 243 65.8
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 1.3e-92 343.6 243 66.7
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 1.3e-92 343.6 243 66.7
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 1.3e-92 343.6 243 66.3
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 8.5e-92 340.9 243 66.3
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 8.5e-92 340.9 243 67.9
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 1.4e-91 340.1 249 65.5
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 1.4e-91 340.1 243 67.1
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 1.4e-91 340.1 244 66.4
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 1.9e-91 339.7 243 67.1
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 2.5e-91 339.3 246 66.7
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 3.2e-91 339.0 243 68.3
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 9.4e-91 337.4 243 65.8
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.6e-90 336.7 252 62.7
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 1.6e-90 336.7 243 64.2
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 2.7e-90 335.9 243 65.4
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 2.7e-90 335.9 243 65.4
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.6e-90 335.5 243 65.8
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 3.6e-90 335.5 243 65.8
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 3.6e-90 335.5 243 67.5
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 7.9e-90 334.3 243 65.4
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 7.9e-90 334.3 243 65.8
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.4e-89 333.6 245 66.5
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.4e-89 333.6 281 59.4
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.8e-89 333.2 243 65.8
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 1.8e-89 333.2 243 65.4
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 5.1e-89 331.6 243 65.8
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 8.8e-89 330.9 245 66.1
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 8.8e-89 330.9 245 66.1
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 8.8e-89 330.9 246 64.2
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 2.6e-88 329.3 245 65.7
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 2.6e-88 329.3 238 66.8
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.3e-88 328.9 245 64.5
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 4.4e-88 328.6 245 64.9
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 5.7e-88 328.2 250 64.4
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.7e-87 326.6 246 65.0
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 1.7e-87 326.6 245 64.9
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.8e-87 325.1 245 65.7
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 6.3e-87 324.7 243 64.2
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 1.1e-86 323.9 245 63.7
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 3.5e-85 318.9 243 62.6
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 4.5e-85 318.5 245 62.4
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.8e-84 315.5 232 65.1
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.2e-82 310.5 248 61.7
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 8.0e-82 307.8 243 60.5
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.5e-80 303.5 246 59.3
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 3.3e-80 302.4 246 58.5
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 4.4e-80 302.0 243 58.4
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.3e-79 300.4 245 60.4
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.2e-79 299.7 243 60.1
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 2.2e-79 299.7 245 60.0
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 2.8e-79 299.3 257 58.0
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.1e-78 297.4 243 60.9
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.4e-78 297.0 243 60.1
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 1.8e-78 296.6 211 66.8
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 3.1e-78 295.8 199 70.4
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 3.1e-78 295.8 200 68.0
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 1.7e-76 290.0 216 65.3
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 7.2e-75 284.6 223 64.1
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 1.6e-74 283.5 216 63.4
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 2.1e-74 283.1 216 62.5
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 4.7e-74 282.0 233 62.2
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.4e-73 280.4 243 58.0
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 1.4e-73 280.4 244 58.2
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 4.0e-73 278.9 248 55.2
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 5.2e-73 278.5 217 63.6
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 5.2e-73 278.5 217 63.6
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.2e-72 277.3 217 63.6
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.2e-72 277.3 193 64.8
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 2.0e-72 276.6 246 60.2
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 5.7e-72 275.0 217 62.7
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 9.8e-72 274.2 246 52.4
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 9.8e-72 274.2 243 57.2
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.8e-71 271.9 244 54.9
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.1e-70 270.8 246 53.3
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.8e-70 270.0 193 65.3
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 2.7e-69 266.2 175 69.1
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 6.1e-66 255.0 196 62.8
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 5.2e-65 251.9 246 49.6
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.4e-64 249.2 206 56.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 4.1e-62 242.3 163 68.1
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 7.0e-62 241.5 243 52.7
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 2.3e-60 236.5 213 52.6
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 2.5e-59 233.0 165 66.1
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 5.6e-59 231.9 210 57.6
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.3e-59 231.5 191 58.1
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 3.0e-57 226.1 238 52.9
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.1e-54 217.6 192 58.3
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 5.6e-51 205.3 214 45.3
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 7.3e-51 204.9 199 52.8
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 1.2e-50 204.1 182 57.1
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.2e-50 204.1 196 56.1
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 4.7e-50 202.2 142 66.2
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 6.2e-50 201.8 227 49.3
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 6.2e-50 201.8 172 59.3
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 1.2e-48 197.6 166 60.2
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.4e-46 190.7 195 51.3
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 4.1e-46 189.1 237 46.4
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 8.6e-44 181.4 194 51.0
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 8.1e-42 174.9 233 41.6
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 1.4e-41 174.1 106 75.5
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 5.2e-41 172.2 125 68.8
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.7e-39 166.0 103 73.8
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 3.2e-38 162.9 103 73.8
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.2e-34 151.0 105 65.7
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 1.7e-31 140.6 103 64.1
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 2.9e-31 139.8 101 69.3
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 6.6e-28 128.6 156 48.1
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 3.6e-26 122.9 185 41.1
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 6.4e-23 112.1 161 36.0
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 1.6e-21 107.5 97 55.7
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 1.4e-17 94.4 66 72.7
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.0e-17 92.8 67 67.2
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-15 85.9 81 50.6
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 8.7e-12 75.1 46 69.6
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.5e-11 73.6 72 52.8
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 6.2e-10 68.9 215 26.0
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 2.6e-08 63.5 82 39.0
FAN16G1285 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.8e-08 62.4 35 77.1


User provided reference genes

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