Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G623.10 Capsicum annuum HOM05D022150 ORTHO05D000017 1.9e-115 419.1 199 100.0
CAN.G375.46 Capsicum annuum HOM05D000007 ORTHO05D000017 9.2e-25 117.9 220 39.1
PGSC0003DMG400036420 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.5e-24 115.9 236 36.0
CAN.G1375.11 Capsicum annuum HOM05D000007 ORTHO05D000017 1.7e-23 113.6 232 36.2
PGSC0003DMG400022273 Solanum tuberosum HOM05D000007 ORTHO05D000949 2.8e-21 106.3 239 34.7
PGSC0003DMG400034923 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.8e-20 101.7 220 35.9
PGSC0003DMG400028421 Solanum tuberosum HOM05D000007 ORTHO05D000017 5.9e-16 88.6 248 34.3
CAN.G1375.9 Capsicum annuum HOM05D000007 ORTHO05D000017 1.0e-15 87.8 205 33.7
CAN.G623.48 Capsicum annuum HOM05D000007 ORTHO05D000017 1.0e-15 87.8 58 74.1
CAN.G181.17 Capsicum annuum HOM05D000007 ORTHO05D000017 1.3e-15 87.4 209 34.4
CAN.G645.21 Capsicum annuum HOM05D000007 ORTHO05D000017 3.0e-15 86.3 182 35.7
CAN.G2122.5 Capsicum annuum HOM05D000007 ORTHO05D000017 5.0e-15 85.5 196 36.2
Nitab4.5_0000874g0100 Nicotiana tabacum HOM05D000007 ORTHO05D000017 8.6e-15 84.7 66 69.7
Nitab4.5_0001668g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.3e-14 82.8 183 36.1
CAN.G2177.14 Capsicum annuum HOM05D000007 ORTHO05D000017 4.3e-14 82.4 239 32.6
CAN.G623.50 Capsicum annuum HOM05D000007 ORTHO05D000017 7.3e-14 81.6 56 69.6
CAN.G575.138 Capsicum annuum HOM05D000007 ORTHO05D000017 9.5e-14 81.3 207 32.4
CAN.G623.14 Capsicum annuum HOM05D000007 ORTHO05D000017 9.5e-14 81.3 177 37.3
Nitab4.5_0017036g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-13 80.5 243 31.3
PGSC0003DMG400039496 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.1e-13 80.1 246 29.7
CAN.G1121.8 Capsicum annuum HOM05D000007 ORTHO05D000017 2.8e-13 79.7 242 30.6
Solyc11g008300.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 2.8e-13 79.7 191 33.5
Solyc11g012550.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 3.6e-13 79.3 237 32.1
PGSC0003DMG400013290 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.7e-13 79.0 243 30.5
Solyc09g005520.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.4e-12 77.4 260 31.2
PGSC0003DMG400036000 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.8e-12 77.0 246 29.3
CAN.G623.46 Capsicum annuum HOM05D000007 ORTHO05D000017 2.3e-12 76.6 58 63.8
PGSC0003DMG400013272 Solanum tuberosum HOM05D000007 ORTHO05D000017 6.8e-12 75.1 254 29.9
CAN.G1799.9 Capsicum annuum HOM05D000007 ORTHO05D000017 8.9e-12 74.7 225 33.3
Sopen11g004110 Solanum pennellii HOM05D000007 ORTHO05D000017 8.9e-12 74.7 243 28.8
CAN.G1209.3 Capsicum annuum HOM05D000007 ORTHO05D000017 1.5e-11 73.9 196 31.1
Nitab4.5_0007853g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.4e-11 72.8 58 63.8
PGSC0003DMG400027935 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.4e-11 72.4 232 29.3
CAN.G222.162 Capsicum annuum HOM05D000007 ORTHO05D000017 5.8e-11 72.0 236 30.1
PGSC0003DMG400004721 Solanum tuberosum HOM05D000007 ORTHO05D000017 9.8e-11 71.2 239 28.5
CAN.G1156.5 Capsicum annuum HOM05D000007 ORTHO05D000017 1.7e-10 70.5 71 53.5
CAN.G1209.1 Capsicum annuum HOM05D000007 ORTHO05D000017 2.2e-10 70.1 199 30.7
Sopen11g004020 Solanum pennellii HOM05D000007 ORTHO05D000017 2.2e-10 70.1 247 28.7
CAN.G321.66 Capsicum annuum HOM05D000007 ORTHO05D000017 2.9e-10 69.7 65 55.4
Nitab4.5_0002050g0190 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.9e-10 69.7 76 51.3
PGSC0003DMG400040257 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.9e-10 69.7 231 31.2
CAN.G575.102 Capsicum annuum HOM05D000007 ORTHO05D000017 3.7e-10 69.3 217 30.4
Nitab4.5_0002050g0180 Nicotiana tabacum HOM05D000007 ORTHO05D000017 3.7e-10 69.3 76 51.3
PGSC0003DMG400007431 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.7e-10 69.3 240 30.8
Nitab4.5_0001438g0170 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.9e-10 68.9 89 44.9
Sopen11g006650 Solanum pennellii HOM05D000007 ORTHO05D000017 4.9e-10 68.9 251 29.5
PGSC0003DMG400029801 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.9e-10 68.9 240 28.8
PGSC0003DMG400043483 Solanum tuberosum HOM05D000007 ORTHO05D000017 4.9e-10 68.9 246 26.8
CAN.G1034.48 Capsicum annuum HOM05D000007 ORTHO05D000017 8.3e-10 68.2 243 25.9
Sopen09g001370 Solanum pennellii HOM05D000007 ORTHO05D000017 1.1e-09 67.8 251 27.9
Nitab4.5_0002499g0110 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.4e-09 67.4 263 29.7
Sopen11g007290 Solanum pennellii HOM05D000007 ORTHO05D000017 1.9e-09 67.0 72 50.0
CAN.G644.29 Capsicum annuum HOM05D000007 ORTHO05D000017 2.4e-09 66.6 54 57.4
PGSC0003DMG400037258 Solanum tuberosum HOM05D000007 ORTHO05D000017 2.4e-09 66.6 62 61.3
CAN.G1799.4 Capsicum annuum HOM05D000007 ORTHO05D000017 3.2e-09 66.2 86 48.8
CAN.G1799.7 Capsicum annuum HOM05D000007 ORTHO05D000017 3.2e-09 66.2 86 48.8
PGSC0003DMG400043742 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.2e-09 66.2 246 27.6
Solyc11g012540.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 4.1e-09 65.9 246 28.5
Sopen11g007270 Solanum pennellii HOM05D000007 ORTHO05D000017 5.4e-09 65.5 243 28.4
CAN.G1652.19 Capsicum annuum HOM05D000007 ORTHO05D000017 7.0e-09 65.1 256 26.6
PGSC0003DMG400001294 Solanum tuberosum HOM05D000007 ORTHO05D000017 7.0e-09 65.1 69 52.2
CAN.G1227.3 Capsicum annuum HOM05D000185 ORTHO05D000017 9.2e-09 64.7 72 50.0
CAN.G488.27 Capsicum annuum HOM05D000007 ORTHO05D000017 9.2e-09 64.7 209 28.7
Nitab4.5_0000519g0140 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.2e-08 64.3 81 45.7
Gohir.A12G083765 Gossypium hirsutum HOM05D000007 ORTHO05D000039 1.6e-08 63.9 208 26.4
Nitab4.5_0001088g0160 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-08 63.9 63 55.6
Nitab4.5_0004725g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.6e-08 63.9 57 59.6
CAN.G1121.7 Capsicum annuum HOM05D000007 ORTHO05D000017 2.0e-08 63.5 66 48.5
Nitab4.5_0005858g0100 Nicotiana tabacum HOM05D000007 ORTHO05D000017 2.0e-08 63.5 63 54.0
Sopen09g001450 Solanum pennellii HOM05D000007 ORTHO05D000017 2.0e-08 63.5 236 27.1
Solyc02g087270.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 3.5e-08 62.8 57 52.6
PGSC0003DMG400040733 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.5e-08 62.8 56 58.9
CAN.G1565.4 Capsicum annuum HOM05D000007 ORTHO05D000017 4.6e-08 62.4 47 66.0
CAN.G2075.10 Capsicum annuum HOM05D000007 ORTHO05D000017 6.0e-08 62.0 47 66.0
CAN.G2702.1 Capsicum annuum HOM05D000007 ORTHO05D000017 6.0e-08 62.0 53 60.4
CAN.G1344.8 Capsicum annuum HOM05D000007 ORTHO05D000017 7.8e-08 61.6 66 47.0
Solyc02g091570.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.0e-07 61.2 80 45.0
Sopen09g001690 Solanum pennellii HOM05D000007 ORTHO05D000017 1.0e-07 61.2 59 54.2
EL10Ac9g22695 Beta vulgaris HOM05D000007 ORTHO05D000039 1.3e-07 60.8 58 50.0
CAN.G2075.8 Capsicum annuum HOM05D000007 ORTHO05D011633 1.3e-07 60.8 72 45.8
Nitab4.5_0000334g0270 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.3e-07 60.8 55 50.9
Solyc01g104940.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.3e-07 60.8 58 53.4
PGSC0003DMG401013254 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.3e-07 60.8 72 48.6
CAN.G867.5 Capsicum annuum HOM05D000007 ORTHO05D000017 1.7e-07 60.5 150 32.0
CAN.G1374.17 Capsicum annuum HOM05D000007 ORTHO05D000017 2.3e-07 60.1 189 32.3
CAN.G1579.17 Capsicum annuum HOM05D000007 ORTHO05D000017 2.3e-07 60.1 54 59.3
CAN.G696.13 Capsicum annuum HOM05D000007 ORTHO05D000017 2.3e-07 60.1 72 50.0
Dinv06538 Davidia involucrata HOM05D000007 ORTHO05D000039 2.3e-07 60.1 189 29.6
CAN.G1121.9 Capsicum annuum HOM05D000007 ORTHO05D000017 3.0e-07 59.7 54 55.6
CAN.G575.120 Capsicum annuum HOM05D000007 ORTHO05D000017 3.0e-07 59.7 56 58.9
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 3.0e-07 59.7 58 46.6
Solyc09g005770.1 Solanum lycopersicum HOM05D000007 ORTHO05D000017 3.0e-07 59.7 58 53.4
CAN.G575.137 Capsicum annuum HOM05D000007 ORTHO05D000017 3.9e-07 59.3 47 61.7
Dinv33763 Davidia involucrata HOM05D000001 ORTHO05D000003 3.9e-07 59.3 58 48.3
Migut.E01121 Erythranthe guttata HOM05D000007 ORTHO05D000039 5.0e-07 58.9 57 50.9
Migut.K01143 Erythranthe guttata HOM05D000007 ORTHO05D000039 5.0e-07 58.9 57 52.6
Nitab4.5_0008120g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000039 5.0e-07 58.9 107 43.9
Actinidia07624 Actinidia chinensis HOM05D000007 ORTHO05D000017 6.6e-07 58.5 81 39.5
CAN.G108.40 Capsicum annuum HOM05D000007 ORTHO05D000017 8.6e-07 58.2 60 51.7
Dinv01035 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-07 58.2 57 43.9
Dinv06537 Davidia involucrata HOM05D000007 ORTHO05D000039 8.6e-07 58.2 202 29.7
Nitab4.5_0001198g0090 Nicotiana tabacum HOM05D000007 ORTHO05D000017 8.6e-07 58.2 81 42.0
Solyc09g005480.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 8.6e-07 58.2 59 52.5
PGSC0003DMG400040830 Solanum tuberosum HOM05D000007 ORTHO05D000017 8.6e-07 58.2 54 53.7
Thecc.05G284200 Theobroma cacao HOM05D000007 ORTHO05D001644 8.6e-07 58.2 75 38.7
CAN.G181.19 Capsicum annuum HOM05D000007 ORTHO05D000017 1.1e-06 57.8 47 61.7
Dinv06536 Davidia involucrata HOM05D000007 ORTHO05D000039 1.1e-06 57.8 57 50.9
Duzib147G0121 Durio zibethinus HOM05D000007 ORTHO05D000039 1.1e-06 57.8 57 49.1
Duzib212G0507 Durio zibethinus HOM05D000007 ORTHO05D011038 1.1e-06 57.8 57 52.6
Nitab4.5_0011094g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.1e-06 57.8 48 62.5
Solyc10g075010.2 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.1e-06 57.8 193 26.4
PGSC0003DMG400025404 Solanum tuberosum HOM05D000007 ORTHO05D000017 1.1e-06 57.8 252 27.4
EL10Ac8g18411 Beta vulgaris HOM05D000007 ORTHO05D000017 1.5e-06 57.4 65 44.6
CAN.G798.50 Capsicum annuum HOM05D000007 ORTHO05D000017 1.5e-06 57.4 60 50.0
Lj1C654T3 Lonicera japonica HOM05D000007 ORTHO05D000039 1.5e-06 57.4 65 49.2
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 1.5e-06 57.4 51 56.9
Nitab4.5_0002499g0150 Nicotiana tabacum HOM05D000007 ORTHO05D000017 1.5e-06 57.4 48 62.5
Solyc09g091220.3 Solanum lycopersicum HOM05D000007 ORTHO05D000017 1.5e-06 57.4 67 46.3
Aqoxy1G00924 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 1.9e-06 57.0 194 24.2
CAN.G2177.13 Capsicum annuum HOM05D000007 ORTHO05D000017 1.9e-06 57.0 48 58.3
AUR62014647 Chenopodium quinoa HOM05D000007 ORTHO05D000017 1.9e-06 57.0 72 43.1
Dinv07686 Davidia involucrata HOM05D000007 ORTHO05D000039 1.9e-06 57.0 57 43.9
Hma1.2p1_1797F.1_g302840 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.9e-06 57.0 64 45.3
CARHR155840 Cardamine hirsuta HOM05D000171 ORTHO05D000101 2.5e-06 56.6 56 44.6
Duzib114G0761 Durio zibethinus HOM05D000007 ORTHO05D000039 2.5e-06 56.6 87 32.2
Lj7C597G11 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-06 56.6 60 48.3
Lj8C10T7 Lonicera japonica HOM05D000007 ORTHO05D000039 2.5e-06 56.6 59 47.5
Peaxi162Scf00700g00332 Petunia axillaris HOM05D000007 ORTHO05D000039 2.5e-06 56.6 60 48.3
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 2.5e-06 56.6 58 44.8
Rhsim03G0265900 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.5e-06 56.6 76 40.8
CAN.G1126.10 Capsicum annuum HOM05D000007 ORTHO05D000017 3.3e-06 56.2 65 47.7
Medtr8g013010 Medicago truncatula HOM05D000007 ORTHO05D000017 3.3e-06 56.2 61 44.3
Peaxi162Scf00359g00116 Petunia axillaris HOM05D000007 ORTHO05D000039 3.3e-06 56.2 60 50.0
Actinidia25575 Actinidia chinensis HOM05D000007 ORTHO05D000039 4.3e-06 55.8 58 43.1
CSS0002013 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 4.3e-06 55.8 54 46.3
DCAR_019681 Daucus carota HOM05D022150 ORTHO05D029191 4.3e-06 55.8 65 44.6
Lj7P401T34 Lonicera japonica HOM05D000007 ORTHO05D000039 4.3e-06 55.8 55 47.3
Lj4g0001610 Lotus japonicus HOM05D000007 ORTHO05D000017 4.3e-06 55.8 57 45.6
QL08p042875 Quercus lobata HOM05D000007 ORTHO05D000039 4.3e-06 55.8 49 51.0
TAR369G0473 Trochodendron aralioides HOM05D000007 ORTHO05D001644 4.3e-06 55.8 61 44.3
CAN.G1134.13 Capsicum annuum HOM05D000176 ORTHO05D000017 5.6e-06 55.5 60 50.0
CAN.G1579.16 Capsicum annuum HOM05D000007 ORTHO05D000017 5.6e-06 55.5 55 52.7
CAN.G2075.9 Capsicum annuum HOM05D000007 ORTHO05D000017 5.6e-06 55.5 55 52.7
MD17G1251100 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-06 55.5 53 52.8
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 5.6e-06 55.5 51 54.9
Medtr5g070080 Medicago truncatula HOM05D000007 ORTHO05D000017 5.6e-06 55.5 44 50.0
Nitab4.5_0000635g0180 Nicotiana tabacum HOM05D000007 ORTHO05D000039 5.6e-06 55.5 62 45.2
Nitab4.5_0001478g0140 Nicotiana tabacum HOM05D000007 ORTHO05D000017 5.6e-06 55.5 58 53.4
RcHm_v2.0_Chr5g0030151 Rosa chinensis HOM05D000007 ORTHO05D000017 5.6e-06 55.5 56 50.0
CAN.G575.75 Capsicum annuum HOM05D000007 ORTHO05D000017 7.3e-06 55.1 52 57.7
AUR62020517 Chenopodium quinoa HOM05D002743 ORTHO05D002895 7.3e-06 55.1 60 41.7
Dinv42745 Davidia involucrata HOM05D000007 ORTHO05D000039 7.3e-06 55.1 62 46.8
Dinv43356 Davidia involucrata HOM05D000007 ORTHO05D000039 7.3e-06 55.1 62 46.8
Migut.L01260 Erythranthe guttata HOM05D001729 ORTHO05D001155 7.3e-06 55.1 45 51.1
FvH4_1g03001 Fragaria vesca HOM05D000007 ORTHO05D000017 7.3e-06 55.1 66 43.9
Glyma.16G163966 Glycine max HOM05D000007 ORTHO05D000017 7.3e-06 55.1 56 46.4
Medtr0128s0070 Medicago truncatula HOM05D000007 ORTHO05D000017 7.3e-06 55.1 51 51.0
Medtr3g103020 Medicago truncatula HOM05D000007 ORTHO05D000017 7.3e-06 55.1 55 45.5
Peaxi162Scf00246g00811 Petunia axillaris HOM05D000007 ORTHO05D000017 7.3e-06 55.1 195 28.7
QL08p017442 Quercus lobata HOM05D000007 ORTHO05D000017 7.3e-06 55.1 59 50.8
Thecc.10G092800 Theobroma cacao HOM05D000007 ORTHO05D000039 7.3e-06 55.1 87 35.6
TPR.G23712 Trifolium pratense HOM05D000007 ORTHO05D000017 7.3e-06 55.1 56 46.4
Aqoxy7G00794 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 9.5e-06 54.7 51 49.0
arahy.Tifrunner.gnm1.ann1.AP71S7 Arachis hypogaea HOM05D000007 ORTHO05D000017 9.5e-06 54.7 66 40.9
arahy.Tifrunner.gnm1.ann1.K4WWU7 Arachis hypogaea HOM05D000007 ORTHO05D000039 9.5e-06 54.7 57 45.6
CAN.G46.3 Capsicum annuum HOM05D000007 ORTHO05D000039 9.5e-06 54.7 56 46.4
AUR62010297 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.5e-06 54.7 56 51.8
COL.COLO4_29077 Corchorus olitorius HOM05D000007 ORTHO05D000017 9.5e-06 54.7 55 49.1
Duzib212G0784 Durio zibethinus HOM05D000007 ORTHO05D000017 9.5e-06 54.7 57 49.1
MD04G1162000 Malus domestica HOM05D000007 ORTHO05D000017 9.5e-06 54.7 95 33.7
Medtr3g034130 Medicago truncatula HOM05D000007 ORTHO05D000017 9.5e-06 54.7 61 41.0
Nitab4.5_0000174g0080 Nicotiana tabacum HOM05D000007 ORTHO05D000039 9.5e-06 54.7 57 52.6
Nitab4.5_0000718g0070 Nicotiana tabacum HOM05D000007 ORTHO05D000017 9.5e-06 54.7 64 45.3
QL04p044868 Quercus lobata HOM05D000007 ORTHO05D000039 9.5e-06 54.7 49 51.0
RcHm_v2.0_Chr2g0154591 Rosa chinensis HOM05D000007 ORTHO05D000017 9.5e-06 54.7 60 48.3
PGSC0003DMG400003831 Solanum tuberosum HOM05D000007 ORTHO05D000017 9.5e-06 54.7 52 48.1
PGSC0003DMG400013260 Solanum tuberosum HOM05D000007 ORTHO05D000017 9.5e-06 54.7 63 46.0
TPR.G17061 Trifolium pratense HOM05D000007 ORTHO05D000017 9.5e-06 54.7 40 65.0
TPR.G18045 Trifolium pratense HOM05D000007 ORTHO05D000017 9.5e-06 54.7 64 43.8
VMungo1215G3073 Vigna mungo HOM05D000007 ORTHO05D000017 9.5e-06 54.7 54 50.0


User provided reference genes

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