Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1698.7 832 100.0
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1534.6 823 91.0
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1521.1 823 90.3
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1517.7 823 89.8
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1506.5 824 89.6
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1498.8 823 89.4
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1435.6 823 86.4
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1248.4 830 73.0
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 827 71.9
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1233.8 827 72.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1233.0 827 72.2
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1231.9 827 70.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1228.8 827 70.9
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1220.7 829 71.8
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1218.0 826 70.8
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 827 70.9
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 823 71.3
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 826 70.8
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1204.9 827 70.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 826 71.2
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1204.1 829 71.0
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1203.3 828 70.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1202.2 827 69.9
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1201.8 827 70.3
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1194.1 825 70.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1192.6 824 70.1
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 824 70.1
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 828 70.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 834 70.4
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1190.6 826 70.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1190.3 824 70.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1185.6 870 67.0
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1184.5 840 68.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1183.3 824 69.8
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1182.5 828 68.8
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1182.2 823 70.1
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1180.6 826 69.4
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1179.5 825 69.1
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1177.9 825 69.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1173.7 826 68.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1172.1 828 68.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1171.8 836 68.1
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1169.5 825 68.6
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1167.1 825 68.6
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1166.4 825 69.0
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1166.0 828 69.0
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1165.2 829 68.4
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1159.4 826 68.2
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1156.7 823 67.4
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1154.4 828 68.2
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1154.0 823 68.0
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1152.1 827 66.9
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1152.1 827 68.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1151.7 823 67.4
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1150.2 823 67.8
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1150.2 831 66.5
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1147.1 823 67.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1146.7 825 67.9
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1146.3 826 68.2
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1145.2 827 68.2
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1144.4 827 67.7
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1144.0 826 68.2
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1144.0 823 67.9
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1139.0 826 67.7
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1138.6 829 67.6
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1133.2 821 67.2
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1130.2 845 65.6
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1129.0 850 65.6
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1128.6 830 66.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1128.6 824 67.4
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1127.9 842 66.2
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1127.1 824 66.9
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1126.3 824 67.6
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1124.8 824 67.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1117.1 826 66.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1113.6 824 66.3
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1099.0 824 65.2
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1095.5 828 65.0
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1093.6 829 64.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1092.8 827 64.9
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1092.0 829 64.9
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1090.9 829 64.8
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1088.6 825 65.0
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1088.2 825 65.0
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1087.8 824 64.9
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1082.8 827 63.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1078.9 828 63.8
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 7.3e-310 1067.0 822 63.6
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 1.1e-308 1063.1 825 64.5
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 4.6e-296 1021.1 646 74.1
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 2.3e-295 1018.8 691 69.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 2.4e-292 1008.8 811 61.9
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 9.0e-292 1006.9 825 61.6
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 5.8e-291 1004.2 694 71.2
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.4e-289 999.6 826 59.1
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 6.3e-277 957.6 692 66.2
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.3e-269 933.3 818 58.8
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.1e-268 930.2 825 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 6.5e-266 921.0 831 54.9
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.8e-260 902.9 821 54.0
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 5.5e-257 891.3 830 53.3
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.3e-202 709.9 763 47.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 2.0e-161 573.9 388 70.9
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 3.0e-154 550.1 304 92.1
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 1.0e-146 525.0 461 57.3
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 3.6e-139 500.0 432 59.0
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 1.6e-99 368.2 320 59.4
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 6.8e-90 336.3 204 83.3
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.9e-62 243.0 168 67.3
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 1.2e-54 219.2 198 59.1
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 5.1e-53 213.8 161 65.2
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 7.9e-38 163.3 216 44.0
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 1.7e-32 145.6 149 48.3
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 6.5e-32 143.7 135 56.3
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 6.1e-30 137.1 119 63.9
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.7e-28 130.6 85 68.2
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.5e-23 115.9 90 62.2
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.0e-21 109.8 76 69.7
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.0e-21 109.8 106 51.9
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 2.6e-20 105.1 73 65.8
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 3.4e-20 104.8 87 62.1
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.5e-16 90.1 273 26.0
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.0e-13 83.2 315 25.1
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 2.0e-12 79.0 322 25.5
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 7.5e-12 77.0 330 23.0
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 3.7e-11 74.7 240 24.2
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 3.7e-11 74.7 64 54.7
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.8e-10 72.4 329 22.2
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-09 69.7 299 24.1
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 5.9e-09 67.4 310 21.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 2.9e-08 65.1 93 43.0
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.6e-08 63.5 310 21.9
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.3e-07 61.2 298 23.5
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 7.3e-07 60.5 299 23.1
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-06 59.7 33 75.8
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 1.6e-06 59.3 294 25.2
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.6e-06 59.3 299 23.4
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 2.1e-06 58.9 82 40.2
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 4.7e-06 57.8 83 49.4
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 4.7e-06 57.8 340 21.8


User provided reference genes

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