Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 1.6e-186 656.0 334 100.0
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 1.7e-164 582.8 331 91.5
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 9.6e-160 567.0 361 83.7
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 6.0e-138 494.6 322 77.0
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 7.9e-138 494.2 326 81.0
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 6.7e-137 491.1 322 76.7
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 8.7e-137 490.7 330 76.1
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 7.4e-136 487.6 331 75.5
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.8e-135 485.7 322 76.1
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 1.4e-134 483.4 349 71.6
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.6e-133 479.2 337 77.7
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 2.0e-125 453.0 325 70.2
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.2e-123 445.7 327 68.2
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 4.2e-123 445.3 327 68.8
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 4.6e-122 441.8 331 66.2
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 7.9e-122 441.0 333 65.5
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.3e-121 439.5 329 66.6
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 1.5e-120 436.8 305 73.8
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 2.5e-120 436.0 354 64.1
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 4.3e-120 435.3 313 68.1
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 9.7e-120 434.1 328 64.6
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.3e-119 433.7 329 66.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 6.3e-119 431.4 335 65.1
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 6.3e-119 431.4 313 68.1
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.2e-119 431.0 331 64.7
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 8.2e-119 431.0 331 65.3
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 6.9e-118 427.9 306 70.3
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 6.9e-118 427.9 313 68.1
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.2e-117 427.2 310 68.4
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.5e-117 426.8 325 65.2
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 2.0e-117 426.4 309 68.3
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 2.6e-117 426.0 333 64.9
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 4.5e-117 425.2 322 64.9
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 2.2e-116 422.9 332 65.4
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 5.0e-116 421.8 327 63.6
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.2e-115 419.1 329 63.8
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 3.2e-115 419.1 331 65.6
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 3.2e-115 419.1 328 65.2
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.2e-115 419.1 319 64.6
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 7.2e-115 417.9 311 66.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 6.1e-114 414.8 331 65.0
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.0e-113 414.1 329 61.4
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 1.8e-113 413.3 314 64.3
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 3.0e-113 412.5 334 63.2
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 3.9e-113 412.1 311 66.9
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 5.1e-113 411.8 311 66.2
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 5.1e-113 411.8 322 62.4
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 8.8e-113 411.0 322 62.1
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 8.8e-113 411.0 311 64.6
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 1.1e-112 410.6 321 63.9
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.1e-112 410.6 312 66.3
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 1.1e-112 410.6 327 62.4
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.2e-111 406.4 271 74.2
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 3.7e-111 405.6 326 62.9
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 1.1e-110 404.1 321 62.9
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 1.4e-110 403.7 320 61.6
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 3.1e-110 402.5 327 61.5
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 3.1e-110 402.5 329 61.4
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 5.3e-110 401.7 312 63.5
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 7.0e-110 401.4 326 62.6
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 1.2e-109 400.6 310 65.5
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.6e-109 399.4 327 60.9
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 4.5e-109 398.7 274 71.2
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 5.9e-109 398.3 327 60.6
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 2.9e-108 396.0 325 61.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 8.5e-108 394.4 357 58.5
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.9e-107 393.3 344 58.4
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 5.5e-107 391.7 313 63.6
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 7.2e-107 391.3 321 60.7
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 8.0e-106 387.9 327 59.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 1.4e-105 387.1 322 59.9
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 6.7e-105 384.8 327 59.3
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 6.7e-105 384.8 317 59.3
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 6.7e-105 384.8 322 58.4
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 6.7e-105 384.8 322 58.4
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 8.8e-105 384.4 328 59.5
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 2.0e-104 383.3 312 61.2
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 2.0e-104 383.3 324 58.3
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 3.3e-104 382.5 327 58.7
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.7e-104 381.7 343 56.3
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 7.5e-104 381.3 312 61.2
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 1.3e-103 380.6 327 58.4
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.7e-103 380.2 326 59.5
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 1.7e-103 380.2 327 58.4
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 2.8e-103 379.4 272 69.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 4.8e-103 378.6 327 58.7
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 6.3e-103 378.3 312 59.0
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 6.3e-103 378.3 320 60.0
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 6.3e-103 378.3 276 65.6
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 8.2e-103 377.9 320 60.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 8.2e-103 377.9 312 59.6
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 1.1e-102 377.5 310 61.0
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 1.4e-102 377.1 294 62.9
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.8e-102 376.7 312 60.6
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.1e-102 375.9 312 60.6
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.9e-101 371.7 331 58.0
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 7.7e-101 371.3 312 59.9
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 7.7e-101 371.3 312 59.9
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 1.0e-100 370.9 327 56.3
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 6.5e-100 368.2 317 58.4
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 4.2e-99 365.5 336 56.5
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 9.4e-99 364.4 272 64.7
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.6e-98 363.6 272 64.3
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 2.1e-98 363.2 317 58.4
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 6.1e-98 361.7 312 58.7
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 6.1e-98 361.7 333 56.5
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 2.3e-97 359.8 327 58.4
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 2.6e-96 356.3 372 51.3
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.3e-95 354.0 326 59.2
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-95 353.6 281 62.3
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 6.3e-95 351.7 316 56.6
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 2.2e-92 343.2 313 56.2
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.2e-92 343.2 308 55.8
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 5.0e-92 342.0 192 93.8
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.1e-91 340.9 331 54.4
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 7.2e-91 338.2 309 56.6
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 2.7e-90 336.3 326 54.3
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 5.2e-89 332.0 326 54.6
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 2.6e-88 329.7 261 62.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.2e-87 326.6 252 63.1
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 3.5e-85 319.3 245 62.4
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 3.5e-85 319.3 308 52.6
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 2.6e-80 303.1 311 55.0
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.4e-80 302.8 228 65.8
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 6.4e-79 298.5 220 73.2
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-78 297.7 329 48.0
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.4e-78 296.6 252 67.1
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 1.7e-76 290.4 461 41.2
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 4.7e-74 282.3 313 52.4
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.6e-72 276.6 228 60.1
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.2e-69 267.7 207 61.8
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 6.2e-66 255.4 170 75.3
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 3.4e-64 249.6 320 45.0
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.3e-60 237.7 207 58.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 4.7e-58 229.2 215 56.3
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 6.2e-58 228.8 183 63.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 1.1e-57 228.0 356 40.2
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 2.3e-57 226.9 317 43.5
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.2e-56 224.6 190 62.6
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 1.7e-55 220.7 186 59.1
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 6.4e-55 218.8 276 46.0
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.6e-53 214.2 156 62.8
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 7.8e-53 211.8 191 56.5
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 1.7e-52 210.7 170 64.1
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 1.6e-50 204.1 147 68.0
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 4.7e-50 202.6 140 70.7
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 5.8e-48 195.7 284 40.8
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 1.4e-46 191.0 132 70.5
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 2.7e-45 186.8 150 61.3
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 7.8e-45 185.3 225 45.3
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-43 181.4 196 50.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 9.0e-41 171.8 270 41.9
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.0e-37 159.1 149 55.0
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 1.9e-35 154.1 152 49.3
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 3.6e-34 149.8 160 45.6
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 1.5e-32 144.4 124 53.2
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 2.6e-32 143.7 120 55.0
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.4e-30 137.9 182 41.8
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.5e-27 127.9 125 56.8
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 3.7e-26 123.2 142 48.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 3.7e-26 123.2 116 58.6
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 1.4e-25 121.3 112 58.0
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.9e-23 113.6 123 45.5
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 8.7e-20 102.1 79 60.8
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 5.7e-19 99.4 79 62.0
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.3e-17 92.8 57 68.4
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 2.0e-16 90.9 89 51.7
QL10p009819 Quercus lobata HOM05D003898 ORTHO05D004642 1.6e-13 81.3 65 60.0
QL08p011560 Quercus lobata HOM05D003898 ORTHO05D004642 2.3e-12 77.4 65 58.5
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 5.1e-12 76.3 75 53.3
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 2.5e-11 73.9 44 79.5
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 9.7e-11 72.0 91 40.7


User provided reference genes

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