Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G616.33 Capsicum annuum HOM05D004724 ORTHO05D005734 0.0e+00 1238.4 625 100.0
PGSC0003DMG400028320 Solanum tuberosum HOM05D004724 ORTHO05D005734 0.0e+00 1082.4 625 85.0
Sopen05g007210 Solanum pennellii HOM05D004724 ORTHO05D005734 4.3e-312 1073.9 625 84.0
Nitab4.5_0004171g0040 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.6e-312 1072.8 625 85.0
Nitab4.5_0000231g0420 Nicotiana tabacum HOM05D004724 ORTHO05D005734 8.5e-303 1043.1 672 78.1
Peaxi162Scf00175g00020 Petunia axillaris HOM05D004724 ORTHO05D005734 9.2e-281 969.9 734 69.3
Lj6A780T47 Lonicera japonica HOM05D004724 ORTHO05D005734 1.3e-237 826.6 625 65.0
Actinidia28645 Actinidia chinensis HOM05D004724 ORTHO05D005734 1.6e-232 809.7 625 63.2
Migut.E00049 Erythranthe guttata HOM05D004724 ORTHO05D005734 7.9e-232 807.4 622 63.0
CiPaw.05G125900 Carya illinoinensis HOM05D004724 ORTHO05D005734 1.1e-228 797.0 628 62.1
Hma1.2p1_0354F.1_g133420 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.6e-227 792.3 626 63.3
Nn4g23396 Nelumbo nucifera HOM05D004724 ORTHO05D005734 4.5e-227 791.6 624 63.0
MSTRG.13448 Avicennia marina HOM05D004724 ORTHO05D005734 6.5e-226 787.7 623 61.8
Thecc.02G332500 Theobroma cacao HOM05D004724 ORTHO05D005734 3.0e-223 778.9 624 62.2
Nn3g17424 Nelumbo nucifera HOM05D004724 ORTHO05D005734 1.1e-222 776.9 624 61.9
Gohir.D02G129300 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.5e-222 775.8 626 61.5
GSVIVG01012211001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.3e-222 775.0 629 62.8
Gorai.005G145100 Gossypium raimondii HOM05D004724 ORTHO05D005734 5.7e-222 774.6 626 61.5
HanXRQChr08g0211831 Helianthus annuus HOM05D004724 ORTHO05D005734 1.3e-221 773.5 621 61.2
QL03p072107 Quercus lobata HOM05D004724 ORTHO05D005734 1.1e-220 770.4 633 61.5
Eucgr.B03160 Eucalyptus grandis HOM05D004724 ORTHO05D005734 1.8e-220 769.6 619 63.5
Oeu048146.1 Olea europaea HOM05D004724 ORTHO05D005734 4.1e-220 768.5 628 61.0
MD13G1063400 Malus domestica HOM05D004724 ORTHO05D005734 6.9e-220 767.7 626 60.2
QL03p072513 Quercus lobata HOM05D004724 ORTHO05D005734 6.9e-220 767.7 633 61.3
Sc04g0007630 Simmondsia chinensis HOM05D004724 ORTHO05D005734 7.6e-219 764.2 627 58.7
Manes.01G028400 Manihot esculenta HOM05D004724 ORTHO05D005734 1.3e-218 763.5 623 59.6
THA.LOC104822013 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 2.2e-218 762.7 629 59.6
CSS0008548 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.9e-218 762.3 624 60.4
Gohir.A03G104200 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.5e-217 759.2 627 60.4
TWI79G1393 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 4.2e-217 758.4 620 60.2
PGR102G0250 Punica granatum HOM05D004724 ORTHO05D005734 7.2e-217 757.7 633 58.8
Cc11_g12080 Coffea canephora HOM05D004724 ORTHO05D005734 2.7e-216 755.7 637 59.8
Lsat_1_v5_gn_8_47681 Lactuca sativa HOM05D004724 ORTHO05D005734 4.6e-216 755.0 616 61.0
TWI31G1115 Tripterygium wilfordii HOM05D004724 ORTHO05D005734 6.1e-216 754.6 623 60.0
SalBow8G1172 Salvia bowleyana HOM05D004724 ORTHO05D005734 2.3e-215 752.7 659 58.1
MD16G1061800 Malus domestica HOM05D004724 ORTHO05D005734 5.1e-215 751.5 626 59.7
Lalb_Chr10g0098781 Lupinus albus HOM05D004724 ORTHO05D005734 1.1e-212 743.8 628 61.0
Atru.chr11.1649 Acer truncatum HOM05D004724 ORTHO05D005734 1.4e-212 743.4 627 59.6
TAR622G0524 Trochodendron aralioides HOM05D004724 ORTHO05D005734 2.4e-212 742.7 624 60.1
MELO3C011422.2 Cucumis melo HOM05D004724 ORTHO05D005734 5.3e-212 741.5 627 59.2
Cfa008886 Carpinus fangiana HOM05D004724 ORTHO05D005734 6.9e-212 741.1 620 58.9
MBI16_g13587_MAGBIO Magnolia biondii HOM05D004724 ORTHO05D005734 6.9e-212 741.1 629 60.3
TPR.G24471 Trifolium pratense HOM05D004724 ORTHO05D005734 4.5e-211 738.4 626 59.4
Dinv34076 Davidia involucrata HOM05D004724 ORTHO05D005734 8.5e-210 734.2 578 64.0
Sed0014019 Sechium edule HOM05D004724 ORTHO05D005734 1.9e-209 733.0 628 58.0
TAR374G1337 Trochodendron aralioides HOM05D004724 ORTHO05D005734 5.5e-209 731.5 624 59.5
Dinv15029 Davidia involucrata HOM05D004724 ORTHO05D005734 7.2e-209 731.1 577 62.7
AT1G26460 Arabidopsis thaliana HOM05D004724 ORTHO05D005734 9.4e-209 730.7 616 57.6
CsaV3_6G033660 Cucumis sativus L. HOM05D004724 ORTHO05D005734 9.4e-209 730.7 627 58.2
Glyma.01G058200 Glycine max HOM05D004724 ORTHO05D005734 3.6e-208 728.8 632 58.4
ClCG08G010390 Citrullus lanatus HOM05D004724 ORTHO05D005734 3.9e-207 725.3 627 57.3
Medtr5g044270 Medicago truncatula HOM05D004724 ORTHO05D005734 6.7e-207 724.5 626 58.8
Prupe.1G286100 Prunus persica HOM05D004724 ORTHO05D005734 2.6e-206 722.6 627 57.7
AL1G39280 Arabidopsis lyrata HOM05D004724 ORTHO05D005734 3.3e-206 722.2 616 57.5
AUR62003111 Chenopodium quinoa HOM05D004724 ORTHO05D005734 5.7e-206 721.5 627 59.5
ATR0064G103 Amborella trichopoda HOM05D004724 ORTHO05D005734 1.3e-205 720.3 609 59.6
Lj2g0005374 Lotus japonicus HOM05D004724 ORTHO05D005734 1.3e-205 720.3 623 58.7
CARHR025500 Cardamine hirsuta HOM05D004724 ORTHO05D005734 1.7e-205 719.9 604 57.5
Aa31LG7G8630 Aethionema arabicum HOM05D004724 ORTHO05D005734 3.7e-205 718.8 605 58.0
BolC5t31188H Brassica oleracea HOM05D004724 ORTHO05D005734 3.7e-205 718.8 621 57.3
Ciclev10031249m.g Citrus clementina HOM05D004724 ORTHO05D005734 1.4e-204 716.8 611 58.9
ECA233G5398 Erigeron canadensis HOM05D004724 ORTHO05D005734 2.4e-204 716.1 618 58.4
Glyma.02G116000 Glycine max HOM05D004724 ORTHO05D005734 1.2e-203 713.8 625 58.4
Carub.0001s2456 Capsella rubella HOM05D004724 ORTHO05D005734 1.5e-203 713.4 616 57.1
SalBow2G3108 Salvia bowleyana HOM05D004724 ORTHO05D005734 4.5e-203 711.8 672 54.6
Ca_04959_v3 Cicer arietinum L. HOM05D004724 ORTHO05D005734 2.2e-202 709.5 625 56.6
Haze_11916 Corylus avellana HOM05D004724 ORTHO05D005734 2.5e-201 706.1 630 56.7
COL.COLO4_27896 Corchorus olitorius HOM05D004724 ORTHO05D005734 3.2e-201 705.7 628 57.3
vmacro16381 Vaccinium macrocarpon HOM05D004724 ORTHO05D005734 3.6e-200 702.2 737 51.6
C05p24540 Brassica napus HOM05D004724 ORTHO05D005734 4.7e-200 701.8 621 56.4
BraA09t39487Z Brassica rapa HOM05D004724 ORTHO05D005734 1.0e-199 700.7 617 56.4
AUR62007926 Chenopodium quinoa HOM05D004724 ORTHO05D005734 1.0e-199 700.7 627 59.3
A09p39880 Brassica napus HOM05D004724 ORTHO05D005734 1.4e-199 700.3 625 56.0
RcHm_v2.0_Chr4g0438491 Rosa chinensis HOM05D004724 ORTHO05D005734 1.4e-199 700.3 627 57.4
Potri.010G159100 Populus trichocarpa HOM05D004724 ORTHO05D005734 6.7e-199 698.0 616 57.1
CANSAT64G0483 Cannabis sativa HOM05D004724 ORTHO05D005734 1.1e-198 697.2 628 55.7
FvH4_4g30160 Fragaria vesca HOM05D004724 ORTHO05D005734 1.7e-197 693.3 632 56.3
THA.LOC104805036 Tarenaya hassleriana HOM05D004724 ORTHO05D005734 1.4e-196 690.3 607 56.5
Thhalv10007071m.g Eutrema salsugineum HOM05D004724 ORTHO05D005734 4.1e-196 688.7 603 56.2
PSO017G2003 Papaver somniferum HOM05D004724 ORTHO05D005734 3.8e-194 682.2 624 56.6
EL10Ac6g14982 Beta vulgaris HOM05D004724 ORTHO05D005734 5.0e-194 681.8 627 57.9
PSO478G4140 Papaver somniferum HOM05D004724 ORTHO05D005734 6.5e-194 681.4 624 56.6
arahy.Tifrunner.gnm1.ann1.06XI8G Arachis hypogaea HOM05D004724 ORTHO05D005734 8.5e-194 681.0 645 55.0
FAN12G2645 Fragaria x ananassa HOM05D004724 ORTHO05D005734 5.5e-193 678.3 632 55.9
FAN22G1297 Fragaria x ananassa HOM05D004724 ORTHO05D005734 4.7e-192 675.2 635 56.4
Rhsim12G0135900 Rhododendron simsii HOM05D004724 ORTHO05D005734 1.0e-191 674.1 601 58.1
HPP92_009526 Vanilla planifolia HOM05D004724 ORTHO05D005734 5.7e-190 668.3 623 54.4
HPP92_009555 Vanilla planifolia HOM05D004724 ORTHO05D005734 1.3e-189 667.2 623 54.6
arahy.Tifrunner.gnm1.ann1.CTA0UQ Arachis hypogaea HOM05D004724 ORTHO05D005734 1.1e-188 664.1 683 51.1
SGA_v2.0_scaffold16G07777 Striga asiatica HOM05D004724 ORTHO05D005734 5.3e-188 661.8 651 51.8
Sabra10G0120800 Salix brachista HOM05D004724 ORTHO05D005734 3.8e-186 655.6 613 54.2
DCAR_027471 Daucus carota HOM05D004724 ORTHO05D005734 2.1e-184 649.8 632 52.8
FAN07G2095 Fragaria x ananassa HOM05D004724 ORTHO05D005734 3.7e-181 639.0 635 54.2
Migut.L01196 Erythranthe guttata HOM05D004724 ORTHO05D005734 6.3e-181 638.3 621 52.5
Hund25184 Selenicereus undatus HOM05D004724 ORTHO05D005734 3.1e-180 636.0 629 53.4
CDE04G2698 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 7.7e-179 631.3 634 52.4
Phvul.003G043100 Phaseolus vulgaris HOM05D004724 ORTHO05D005734 1.1e-177 627.5 625 51.8
FAN17G2607 Fragaria x ananassa HOM05D004724 ORTHO05D005734 7.2e-177 624.8 644 52.0
Psat2g129640 Pisum sativum HOM05D004724 ORTHO05D005734 8.3e-173 611.3 520 59.4
Zm00001eb108470 Zea mays HOM05D004724 ORTHO05D005734 3.8e-170 602.4 608 51.2
Os07g0599000 Oryza sativa ssp. japonica HOM05D004724 ORTHO05D005734 1.5e-169 600.5 605 51.4
Zm00001eb326730 Zea mays HOM05D004724 ORTHO05D005734 1.2e-166 590.9 607 49.8
Solyc05g012390.4 Solanum lycopersicum HOM05D004724 ORTHO05D005734 2.0e-166 590.1 326 88.3
Aqoxy3G03611 Aquilegia oxysepala HOM05D004724 ORTHO05D005734 2.0e-163 580.1 629 49.6
VMungo1215G0095 Vigna mungo HOM05D004724 ORTHO05D005734 2.7e-163 579.7 623 49.8
SGA_v2.0_scaffold287G47167 Striga asiatica HOM05D004724 ORTHO05D005734 5.8e-158 562.0 515 55.7
CiPaw.06G092100 Carya illinoinensis HOM05D004724 ORTHO05D005734 2.7e-147 526.6 659 46.3
SHI32884 Sapria himalayana HOM05D004724 ORTHO05D005734 2.0e-126 457.2 446 53.4
DCAR_027465 Daucus carota HOM05D004724 ORTHO05D005734 7.9e-123 445.3 336 61.0
CSS0031560 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.3e-122 444.5 428 54.2
CSS0025326 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.9e-117 426.8 407 54.3
CSS0020440 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 1.9e-113 414.1 400 53.5
CSS0043256 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 4.8e-112 409.5 407 52.3
Nitab4.5_0011966g0020 Nicotiana tabacum HOM05D004724 ORTHO05D005734 1.3e-109 401.4 524 45.2
CSS0037716 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 2.9e-109 400.2 428 50.0
SEGI_02789 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 2.1e-107 394.0 397 53.7
CSS0034194 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.9e-107 392.1 428 49.1
CDE07G1937 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 5.7e-105 386.0 432 48.1
CSS0003173 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 7.4e-105 385.6 416 49.0
CSS0030883 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 6.5e-101 372.5 403 50.4
Ah.02g126900 Amaranthus hybridus HOM05D004724 ORTHO05D005734 3.3e-97 360.1 451 45.2
CSS0040633 Camellia sinensis var. sinensis HOM05D004724 ORTHO05D005734 3.8e-93 346.7 406 46.8
Mapoly0002s0313 Marchantia polymorpha HOM05D004724 ORTHO05D005734 1.7e-88 331.3 554 35.2
Cpa.g.sc1.117 Carica papaya HOM05D004724 ORTHO05D005734 2.9e-85 320.5 205 73.7
AagrBONN_evm.TU.Sc2ySwM_117.2858 Anthoceros agrestis HOM05D004724 ORTHO05D005734 1.9e-84 317.8 503 35.8
Pp3c1_28760 Physcomitrium patens HOM05D004724 ORTHO05D005734 5.9e-70 269.6 525 33.0
Pp3c14_20030 Physcomitrium patens HOM05D004724 ORTHO05D005734 1.5e-65 255.0 519 32.2
EL10Ac5g12464 Beta vulgaris HOM05D004724 ORTHO05D005734 6.1e-59 233.0 248 49.6
SHI32882 Sapria himalayana HOM05D004724 ORTHO05D005734 7.0e-55 219.5 167 62.3
GSVIVG01028487001 Vitis vinifera HOM05D004724 ORTHO05D005734 2.1e-51 208.0 240 49.6
CBR_g55790 Chara braunii HOM05D004724 ORTHO05D005734 1.5e-49 201.8 530 27.7
GSVIVG01021735001 Vitis vinifera HOM05D004724 ORTHO05D005734 4.4e-49 200.3 260 46.5
QL03p072489 Quercus lobata HOM05D000013 ORTHO05D000011 9.8e-49 199.1 204 51.5
SHI32782 Sapria himalayana HOM05D004724 ORTHO05D005734 5.4e-47 193.4 420 31.7
Actinidia32302 Actinidia chinensis HOM05D004724 ORTHO05D005734 5.1e-37 160.2 135 57.8
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 3.7e-32 144.1 103 62.1
Medtr6g024415 Medicago truncatula HOM05D004724 ORTHO05D005734 1.2e-30 139.0 109 61.5
GSVIVG01009940001 Vitis vinifera HOM05D004724 ORTHO05D005734 1.0e-29 136.0 121 58.7
DCAR_027469 Daucus carota HOM05D004724 ORTHO05D005734 5.1e-29 133.7 237 40.1
Ah.02g126910 Amaranthus hybridus HOM05D004724 ORTHO05D005734 1.1e-28 132.5 107 61.7
Gohir.D12G165033 Gossypium hirsutum HOM05D004724 ORTHO05D005734 6.4e-24 116.7 102 57.8
Actinidia32301 Actinidia chinensis HOM05D004724 ORTHO05D005734 2.7e-22 111.3 97 56.7
SEGI_03319 Sequoiadendron giganteum HOM05D004724 ORTHO05D005734 1.0e-21 109.4 93 57.0
QL03p072083 Quercus lobata HOM05D004724 ORTHO05D005734 3.9e-21 107.5 89 56.2
Medtr1g009040 Medicago truncatula HOM05D004724 ORTHO05D005734 8.7e-21 106.3 168 39.3
C07p19370 Brassica napus HOM05D004724 ORTHO05D005734 2.1e-19 101.7 86 54.7
CDE07G0543 Ceratophyllum demersum HOM05D004724 ORTHO05D005734 9.0e-18 96.3 80 56.2
A07p12930 Brassica napus HOM05D004724 ORTHO05D005734 1.9e-15 88.6 69 58.0
BraA07t29066Z Brassica rapa HOM05D004724 ORTHO05D005734 1.9e-15 88.6 69 58.0
BolC7t42456H Brassica oleracea HOM05D004724 ORTHO05D005734 1.0e-13 82.8 69 56.5
Hma1.2p1_0477F.1_g160970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.1e-11 75.1 44 72.7
Hma1.2p1_1953F.1_g308830 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 2.1e-11 75.1 44 72.7
Hma1.2p1_0820F.1_g223970 Hydrangea macrophylla HOM05D004724 ORTHO05D005734 6.2e-11 73.6 48 70.8
Psat4g115000 Pisum sativum HOM05D000300 ORTHO05D008589 3.8e-08 64.3 242 28.1
vmacro16211 Vaccinium macrocarpon HOM05D000300 ORTHO05D008589 6.4e-08 63.5 243 27.6
Ca_21414_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 1.1e-07 62.8 234 27.8
TPR.G34661 Trifolium pratense HOM05D000300 ORTHO05D008589 1.1e-07 62.8 242 26.9
Rhsim12G0112500 Rhododendron simsii HOM05D000300 ORTHO05D008589 1.9e-07 62.0 243 27.6
Actinidia15078 Actinidia chinensis HOM05D000300 ORTHO05D008589 2.4e-07 61.6 230 27.8
Gohir.D12G165066 Gossypium hirsutum HOM05D004724 ORTHO05D005734 2.4e-07 61.6 55 47.3
Ca_22573_v3 Cicer arietinum L. HOM05D000300 ORTHO05D008589 3.2e-07 61.2 230 26.5
Aqoxy3G01101 Aquilegia oxysepala HOM05D000300 ORTHO05D008589 9.3e-07 59.7 240 24.6
MD07G1097800 Malus domestica HOM05D000300 ORTHO05D000383 9.3e-07 59.7 243 23.5
arahy.Tifrunner.gnm1.ann1.01S097 Arachis hypogaea HOM05D000300 ORTHO05D008589 1.6e-06 58.9 237 27.0
Lj4g0001854 Lotus japonicus HOM05D000300 ORTHO05D008589 2.1e-06 58.5 246 24.4
AUR62024303 Chenopodium quinoa HOM05D000300 ORTHO05D008589 3.5e-06 57.8 248 28.2
BcaC06g35143 Brassica carinata HOM05D004724 ORTHO05D005734 4.6e-06 57.4 53 49.1
Hund06017 Selenicereus undatus HOM05D000300 ORTHO05D008589 4.6e-06 57.4 245 26.9
Glyma.05G132700 Glycine max HOM05D000001 ORTHO05D000003 6.0e-06 57.0 147 22.4
VMungo0251G3375 Vigna mungo HOM05D000300 ORTHO05D008589 6.0e-06 57.0 244 27.0
arahy.Tifrunner.gnm1.ann1.42J6NL Arachis hypogaea HOM05D000300 ORTHO05D008589 7.9e-06 56.6 229 26.2


User provided reference genes

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