Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 1.9e-70 269.2 150 100.0
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 6.2e-58 227.6 145 80.7
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 1.1e-57 226.9 146 85.6
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 8.9e-57 223.8 151 80.1
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 3.2e-46 188.7 125 72.8
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 4.2e-46 188.3 125 72.8
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.2e-46 188.3 120 79.2
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.1e-45 186.0 122 79.5
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 2.7e-45 185.7 119 77.3
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 6.0e-45 184.5 113 80.5
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 6.0e-45 184.5 119 74.8
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 6.0e-45 184.5 124 75.0
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 7.8e-45 184.1 125 74.4
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 7.8e-45 184.1 125 74.4
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 7.8e-45 184.1 125 74.4
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 7.8e-45 184.1 125 76.0
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 1.7e-44 183.0 147 66.7
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.3e-44 182.6 119 73.9
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 3.0e-44 182.2 119 74.8
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.9e-44 181.8 122 74.6
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 3.9e-44 181.8 124 75.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 5.1e-44 181.4 114 77.2
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 5.1e-44 181.4 123 74.8
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 6.6e-44 181.0 117 77.8
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 8.7e-44 180.6 148 67.6
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.1e-43 180.3 123 74.8
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 1.5e-43 179.9 124 75.0
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 1.9e-43 179.5 119 73.9
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 3.3e-43 178.7 114 78.9
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 5.6e-43 177.9 123 72.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 7.3e-43 177.6 114 78.1
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 9.6e-43 177.2 125 68.8
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.3e-42 176.8 111 80.2
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 1.6e-42 176.4 123 69.9
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.6e-42 176.4 88 97.7
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 2.1e-42 176.0 123 74.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 2.1e-42 176.0 149 69.1
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 2.1e-42 176.0 125 72.8
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 2.8e-42 175.6 123 69.1
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 2.8e-42 175.6 122 73.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.8e-42 175.6 121 71.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 3.6e-42 175.3 127 67.7
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 3.6e-42 175.3 115 77.4
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 4.8e-42 174.9 122 70.5
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 6.2e-42 174.5 127 67.7
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.1e-41 173.7 114 75.4
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 1.1e-41 173.7 119 72.3
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.4e-41 173.3 123 71.5
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 1.4e-41 173.3 120 70.0
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.4e-41 173.3 110 72.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.8e-41 172.9 116 73.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 1.8e-41 172.9 112 73.2
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 2.4e-41 172.6 122 71.3
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.4e-41 172.6 124 72.6
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 4.0e-41 171.8 118 74.6
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 5.3e-41 171.4 122 69.7
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 6.9e-41 171.0 114 74.6
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 6.9e-41 171.0 121 71.1
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 9.0e-41 170.6 118 74.6
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 1.2e-40 170.2 114 73.7
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 1.2e-40 170.2 117 73.5
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 1.2e-40 170.2 116 69.8
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.0e-40 169.5 122 68.9
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 2.0e-40 169.5 147 62.6
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 2.0e-40 169.5 147 62.6
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.6e-40 169.1 118 66.9
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.5e-40 168.3 86 95.3
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.3e-39 166.8 120 70.0
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 1.7e-39 166.4 119 68.1
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.9e-39 165.6 113 71.7
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 2.9e-39 165.6 131 65.6
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 4.9e-39 164.9 135 65.2
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 4.9e-39 164.9 119 68.9
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-38 163.7 135 63.7
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 1.1e-38 163.7 135 63.7
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.1e-38 163.7 119 68.9
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 1.4e-38 163.3 123 66.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 2.4e-38 162.5 124 63.7
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 3.2e-38 162.2 123 65.0
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 4.2e-38 161.8 126 66.7
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 4.2e-38 161.8 111 72.1
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 7.1e-38 161.0 111 73.0
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 7.1e-38 161.0 119 70.6
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.2e-37 160.2 115 69.6
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 2.1e-37 159.5 130 63.8
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 2.7e-37 159.1 118 70.3
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.5e-37 158.7 115 67.8
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.5e-37 158.7 121 63.6
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 4.6e-37 158.3 118 62.7
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 1.8e-36 156.4 123 62.6
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 2.3e-36 156.0 123 65.9
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 6.7e-36 154.5 125 64.8
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.1e-35 153.7 124 66.1
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 1.5e-35 153.3 116 62.9
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.6e-34 149.8 82 91.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.4e-33 146.7 121 60.3
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 1.5e-32 143.3 156 51.9
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 2.6e-32 142.5 178 47.8
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 4.5e-32 141.7 117 65.8
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 5.8e-32 141.4 118 62.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.3e-31 140.2 83 78.3
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.3e-31 140.2 96 76.0
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 1.7e-31 139.8 124 66.1
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 2.2e-31 139.4 161 50.3
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.9e-31 139.0 99 64.6
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.8e-31 138.7 117 65.0
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 1.0e-28 130.6 128 58.6
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 1.0e-28 130.6 99 62.6
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 1.3e-28 130.2 68 86.8
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 3.0e-28 129.0 108 64.8
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 3.9e-28 128.6 132 53.8
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 5.1e-28 128.3 115 54.8
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 6.7e-28 127.9 116 61.2
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 8.7e-28 127.5 123 57.7
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 1.9e-27 126.3 111 62.2
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.9e-27 126.3 98 65.3
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 5.6e-27 124.8 120 55.8
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 7.4e-27 124.4 111 61.3
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 1.3e-26 123.6 113 51.3
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 9.0e-25 117.5 68 76.5
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.3e-23 113.6 98 55.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 1.2e-21 107.1 67 71.6
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 1.8e-20 103.2 178 38.2
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 8.2e-18 94.4 82 61.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 6.1e-13 78.2 62 59.7
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.4e-12 77.0 66 50.0
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 5.1e-12 75.1 51 62.7
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 4.3e-11 72.0 80 53.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 4.3e-11 72.0 62 58.1
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 8.2e-10 67.8 49 65.3


User provided reference genes

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