Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G616.15 Capsicum annuum HOM05D004144 ORTHO05D004902 1.5e-164 582.8 288 100.0
Sopen05g007260 Solanum pennellii HOM05D004144 ORTHO05D004902 1.1e-151 540.0 288 92.7
Nitab4.5_0013309g0010 Nicotiana tabacum HOM05D004144 ORTHO05D004902 9.5e-140 500.4 288 86.1
Peaxi162Scf00525g00621 Petunia axillaris HOM05D004144 ORTHO05D004902 1.8e-138 496.1 288 85.4
Nitab4.5_0000905g0140 Nicotiana tabacum HOM05D004144 ORTHO05D004902 1.7e-101 373.2 227 81.9
vmacro18517 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 3.6e-99 365.5 236 77.5
Cc07_g12990 Coffea canephora HOM05D004144 ORTHO05D004902 1.4e-98 363.6 297 66.7
MSTRG.15643 Avicennia marina HOM05D004144 ORTHO05D004902 4.0e-98 362.1 289 68.9
Lj4A255T25 Lonicera japonica HOM05D004144 ORTHO05D004902 4.0e-98 362.1 231 78.8
CiPaw.04G048600 Carya illinoinensis HOM05D004144 ORTHO05D004902 5.3e-98 361.7 241 75.5
SGA_v2.0_scaffold108G30989 Striga asiatica HOM05D004144 ORTHO05D004902 2.0e-97 359.8 246 76.0
SalBow3G3518 Salvia bowleyana HOM05D004144 ORTHO05D004902 4.5e-97 358.6 288 69.1
Hma1.2p1_0034F.1_g021300 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 3.8e-96 355.5 235 77.4
Eucgr.J01628 Eucalyptus grandis HOM05D004144 ORTHO05D004902 8.4e-96 354.4 197 86.8
TAR629G3342 Trochodendron aralioides HOM05D004144 ORTHO05D004902 1.4e-95 353.6 290 65.2
Atru.chr1.1960 Acer truncatum HOM05D004144 ORTHO05D004902 2.4e-95 352.8 289 67.5
MD07G1041100 Malus domestica HOM05D004144 ORTHO05D004902 3.2e-95 352.4 241 75.9
PGR042G3225 Punica granatum HOM05D004144 ORTHO05D004902 5.5e-95 351.7 193 88.6
CSS0050506 Camellia sinensis var. sinensis HOM05D004144 ORTHO05D004902 7.1e-95 351.3 229 78.6
RcHm_v2.0_Chr3g0452351 Rosa chinensis HOM05D004144 ORTHO05D004902 9.3e-95 350.9 288 67.7
TWI23G0771 Tripterygium wilfordii HOM05D004144 ORTHO05D004902 9.3e-95 350.9 293 63.8
Gorai.001G122400 Gossypium raimondii HOM05D004144 ORTHO05D004902 1.2e-94 350.5 238 75.6
Sed0015810 Sechium edule HOM05D004144 ORTHO05D004902 1.2e-94 350.5 237 76.8
PGR102G3261 Punica granatum HOM05D004144 ORTHO05D004902 1.6e-94 350.1 193 88.6
RcHm_v2.0_Chr1g0359421 Rosa chinensis HOM05D004144 ORTHO05D004902 1.6e-94 350.1 199 86.9
MELO3C017589.2 Cucumis melo HOM05D004144 ORTHO05D004902 2.1e-94 349.7 243 72.8
ClCG07G009570 Citrullus lanatus HOM05D004144 ORTHO05D004902 3.5e-94 349.0 243 73.3
Ciclev10002120m.g Citrus clementina HOM05D004144 ORTHO05D004902 3.5e-94 349.0 293 66.2
Sed0013521 Sechium edule HOM05D004144 ORTHO05D004902 3.5e-94 349.0 199 86.4
MD02G1272100 Malus domestica HOM05D004144 ORTHO05D004902 6.0e-94 348.2 241 75.5
EL10Ac1g00114 Beta vulgaris HOM05D004144 ORTHO05D004902 1.0e-93 347.4 287 63.1
Gohir.D07G114100 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.0e-93 347.4 236 75.4
Sc18g0000970 Simmondsia chinensis HOM05D004144 ORTHO05D004902 1.3e-93 347.1 197 85.8
Oeu062160.1 Olea europaea HOM05D004144 ORTHO05D004902 1.8e-93 346.7 242 73.6
THA.LOC104815917 Tarenaya hassleriana HOM05D004144 ORTHO05D004902 2.3e-93 346.3 198 85.4
Hund18774 Selenicereus undatus HOM05D004144 ORTHO05D004902 3.0e-93 345.9 203 82.3
Prupe.7G012700 Prunus persica HOM05D004144 ORTHO05D004902 5.1e-93 345.1 202 84.2
Lsat_1_v5_gn_3_67200 Lactuca sativa HOM05D004144 ORTHO05D004902 6.7e-93 344.7 286 64.0
Gohir.A11G203400 Gossypium hirsutum HOM05D004144 ORTHO05D004902 8.7e-93 344.4 238 74.4
unitig_32.g10726 Utricularia gibba HOM05D004144 ORTHO05D004902 8.7e-93 344.4 241 73.9
Haze_14304 Corylus avellana HOM05D004144 ORTHO05D004902 1.1e-92 344.0 268 67.2
Migut.H02241 Erythranthe guttata HOM05D004144 ORTHO05D004902 2.5e-92 342.8 183 90.7
Glyma.18G043100 Glycine max HOM05D004144 ORTHO05D004902 2.5e-92 342.8 225 76.4
Duzib170G0191 Durio zibethinus HOM05D004144 ORTHO05D004902 3.3e-92 342.4 231 75.3
HanXRQChr16g0532751 Helianthus annuus HOM05D004144 ORTHO05D004902 3.3e-92 342.4 193 85.0
Prupe.3G281100 Prunus persica HOM05D004144 ORTHO05D004902 3.3e-92 342.4 289 64.4
Lj6g0015186 Lotus japonicus HOM05D004144 ORTHO05D004902 4.3e-92 342.0 291 63.2
Lalb_Chr20g0117051 Lupinus albus HOM05D004144 ORTHO05D004902 4.3e-92 342.0 225 76.0
Gohir.A07G110500 Gossypium hirsutum HOM05D004144 ORTHO05D004902 5.6e-92 341.7 238 74.4
Glyma.11G213600 Glycine max HOM05D004144 ORTHO05D004902 7.4e-92 341.3 288 63.9
ECA238G1245 Erigeron canadensis HOM05D004144 ORTHO05D004902 1.3e-91 340.5 190 85.8
TPR.G26653 Trifolium pratense HOM05D004144 ORTHO05D004902 1.3e-91 340.5 226 76.1
Lalb_Chr18g0053671 Lupinus albus HOM05D004144 ORTHO05D004902 2.1e-91 339.7 225 75.6
arahy.Tifrunner.gnm1.ann1.87SQNY Arachis hypogaea HOM05D004144 ORTHO05D004902 2.8e-91 339.3 225 75.1
CARHR001740 Cardamine hirsuta HOM05D004144 ORTHO05D004902 2.8e-91 339.3 222 75.7
vmacro19339 Vaccinium macrocarpon HOM05D004144 ORTHO05D004902 3.7e-91 339.0 270 67.0
arahy.Tifrunner.gnm1.ann1.U9M4C7 Arachis hypogaea HOM05D004144 ORTHO05D004902 4.8e-91 338.6 225 75.1
MBI16_g12479_MAGBIO Magnolia biondii HOM05D004144 ORTHO05D004902 4.8e-91 338.6 239 72.8
Manes.16G049900 Manihot esculenta HOM05D004144 ORTHO05D004902 6.2e-91 338.2 195 84.1
BolC8t52845H Brassica oleracea HOM05D004144 ORTHO05D004902 1.1e-90 337.4 209 78.5
AL1G11770 Arabidopsis lyrata HOM05D004144 ORTHO05D004902 1.4e-90 337.0 222 74.8
BcaC07g42317 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-90 337.0 229 73.4
BcaC07g42390 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-90 337.0 209 78.5
C08p53300 Brassica napus HOM05D004144 ORTHO05D004902 1.4e-90 337.0 209 78.5
Psat5g142040 Pisum sativum HOM05D004144 ORTHO05D004902 1.4e-90 337.0 225 75.6
Medtr3g053650 Medicago truncatula HOM05D004144 ORTHO05D004902 2.4e-90 336.3 225 74.7
Thecc.09G283000 Theobroma cacao HOM05D004144 ORTHO05D004902 2.4e-90 336.3 233 74.7
Thhalv10008363m.g Eutrema salsugineum HOM05D004144 ORTHO05D004902 3.1e-90 335.9 209 78.5
SGA_v2.0_scaffold2G00964 Striga asiatica HOM05D004144 ORTHO05D004902 3.1e-90 335.9 246 72.8
VMungo1383G1060 Vigna mungo HOM05D004144 ORTHO05D004902 3.1e-90 335.9 293 63.5
A09p68730 Brassica napus HOM05D004144 ORTHO05D004902 4.0e-90 335.5 205 79.5
Carub.0001s0149 Capsella rubella HOM05D004144 ORTHO05D004902 4.0e-90 335.5 222 74.8
AT1G02410 Arabidopsis thaliana HOM05D004144 ORTHO05D004902 9.0e-90 334.3 211 78.2
Sp1g01500 Schrenkiella parvula HOM05D004144 ORTHO05D004902 1.2e-89 334.0 198 81.8
Cfa007770 Carpinus fangiana HOM05D004144 ORTHO05D004902 1.5e-89 333.6 290 64.5
Zm00001eb055360 Zea mays HOM05D004144 ORTHO05D004902 1.5e-89 333.6 219 76.7
Aa31LG1G10050 Aethionema arabicum HOM05D004144 ORTHO05D004902 2.6e-89 332.8 197 81.2
Nn1g04486 Nelumbo nucifera HOM05D004144 ORTHO05D004902 2.6e-89 332.8 302 61.9
Phvul.001G227800 Phaseolus vulgaris HOM05D004144 ORTHO05D004902 2.6e-89 332.8 271 64.2
CDE04G3693 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 5.8e-89 331.6 195 82.1
Atru.chr4.1444 Acer truncatum HOM05D004144 ORTHO05D004902 7.6e-89 331.3 320 59.7
C03p00140 Brassica napus HOM05D004144 ORTHO05D004902 4.9e-88 328.6 193 83.4
Ca_17077_v3 Cicer arietinum L. HOM05D004144 ORTHO05D004902 8.4e-88 327.8 182 86.3
BraA09t42212Z Brassica rapa HOM05D004144 ORTHO05D004902 1.4e-87 327.0 214 75.7
BcaC05g24628 Brassica carinata HOM05D004144 ORTHO05D004902 2.5e-87 326.2 194 80.4
Os03g0718600 Oryza sativa ssp. japonica HOM05D004144 ORTHO05D004902 2.5e-87 326.2 181 85.6
A08p37680 Brassica napus HOM05D004144 ORTHO05D004902 3.2e-87 325.9 194 82.0
BraA08t35664Z Brassica rapa HOM05D004144 ORTHO05D004902 3.2e-87 325.9 194 82.0
CsaV3_UNG144100 Cucumis sativus L. HOM05D004144 ORTHO05D004902 4.2e-87 325.5 237 71.7
FAN06G4796 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.2e-86 323.9 197 82.7
GSVIVG01024421001 Vitis vinifera HOM05D004144 ORTHO05D004902 1.2e-86 323.9 243 67.5
PSO170G2172 Papaver somniferum HOM05D004144 ORTHO05D004902 1.6e-86 323.6 286 62.2
ATR0626G272 Amborella trichopoda HOM05D004144 ORTHO05D004902 3.5e-86 322.4 303 58.1
Duzib168G0342 Durio zibethinus HOM05D004144 ORTHO05D004902 3.5e-86 322.4 180 87.8
A10p01190 Brassica napus HOM05D004144 ORTHO05D004902 6.0e-86 321.6 193 79.3
FAN01G2657 Fragaria x ananassa HOM05D004144 ORTHO05D004902 6.0e-86 321.6 188 85.1
FAN10G1720 Fragaria x ananassa HOM05D004144 ORTHO05D004902 6.0e-86 321.6 188 85.1
FAN10G4152 Fragaria x ananassa HOM05D004144 ORTHO05D004902 6.0e-86 321.6 188 85.1
BcaB01g06136 Brassica carinata HOM05D004144 ORTHO05D004902 7.9e-86 321.2 202 78.2
BolC3t12580H Brassica oleracea HOM05D004144 ORTHO05D004902 7.9e-86 321.2 202 78.2
CsaV3_4G004740 Cucumis sativus L. HOM05D004144 ORTHO05D004902 7.9e-86 321.2 192 82.3
Potri.001G078500 Populus trichocarpa HOM05D004144 ORTHO05D004902 1.0e-85 320.9 167 91.6
COL.COLO4_19858 Corchorus olitorius HOM05D004144 ORTHO05D004902 2.3e-85 319.7 269 64.3
HPP92_002286 Vanilla planifolia HOM05D004144 ORTHO05D004902 2.3e-85 319.7 182 85.7
CiPaw.03G077800 Carya illinoinensis HOM05D004144 ORTHO05D004902 3.0e-85 319.3 287 61.3
Solyc05g012440.4 Solanum lycopersicum HOM05D004144 ORTHO05D004902 1.1e-84 317.4 156 99.4
Lj2A513G59 Lonicera japonica HOM05D004144 ORTHO05D004902 3.3e-84 315.8 263 66.5
C05p01210 Brassica napus HOM05D004144 ORTHO05D004902 9.6e-84 314.3 198 77.8
SEGI_01185 Sequoiadendron giganteum HOM05D004144 ORTHO05D004902 1.3e-83 313.9 205 76.1
arahy.Tifrunner.gnm1.ann1.F8HJNJ Arachis hypogaea HOM05D004144 ORTHO05D004902 1.6e-83 313.5 277 60.6
BolC5t28904H Brassica oleracea HOM05D004144 ORTHO05D004902 1.6e-83 313.5 199 77.4
BcaB03g13513 Brassica carinata HOM05D004144 ORTHO05D004902 1.4e-82 310.5 192 79.2
BraA10t42397Z Brassica rapa HOM05D004144 ORTHO05D004902 5.3e-82 308.5 198 77.3
Oeu048969.2 Olea europaea HOM05D004144 ORTHO05D004902 6.9e-82 308.1 318 55.3
BcaNung06859 Brassica carinata HOM05D004144 ORTHO05D004902 2.9e-80 302.8 194 75.3
Actinidia28789 Actinidia chinensis HOM05D004144 ORTHO05D004902 5.0e-80 302.0 246 65.4
Aqoxy3G04002 Aquilegia oxysepala HOM05D004144 ORTHO05D004902 1.4e-79 300.4 293 56.3
Dinv19068 Davidia involucrata HOM05D004144 ORTHO05D000107 9.3e-79 297.7 271 60.9
BcaB01g06133 Brassica carinata HOM05D004144 ORTHO05D004902 1.5e-76 290.4 223 66.4
C04p03290 Brassica napus HOM05D004144 ORTHO05D004902 2.8e-75 286.2 180 77.8
FAN03G0820 Fragaria x ananassa HOM05D004144 ORTHO05D004902 1.4e-74 283.9 149 92.6
SMO169G0145 Selaginella moellendorffii HOM05D004144 ORTHO05D004902 2.0e-73 280.0 180 73.3
PSO782G2695 Papaver somniferum HOM05D004144 ORTHO05D004902 4.5e-73 278.9 152 86.8
Mapoly0070s0059 Marchantia polymorpha HOM05D004144 ORTHO05D004902 3.8e-72 275.8 181 71.3
Sabra01G0055800 Salix brachista HOM05D004144 ORTHO05D004902 2.5e-71 273.1 365 46.6
Medtr3g064810 Medicago truncatula HOM05D004144 ORTHO05D004902 7.2e-71 271.6 181 74.6
Rhsim08G0020500 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.7e-67 260.4 237 60.8
CBR_g51986 Chara braunii HOM05D004144 ORTHO05D004902 1.8e-66 256.9 188 66.0
AagrBONN_evm.TU.Sc2ySwM_228.342 Anthoceros agrestis HOM05D004144 ORTHO05D004902 6.9e-66 255.0 165 73.3
QL02p060046 Quercus lobata HOM05D004144 ORTHO05D004902 1.2e-62 244.2 228 61.0
Rhsim05G0054900 Rhododendron simsii HOM05D004144 ORTHO05D004902 1.2e-62 244.2 211 64.0
AUR62023515 Chenopodium quinoa HOM05D004144 ORTHO05D004902 2.3e-61 240.0 178 67.4
CANSAT35G0424 Cannabis sativa HOM05D004144 ORTHO05D004902 2.0e-60 236.9 227 59.0
MCO11G668 Micromonas commoda HOM05D004144 ORTHO05D004902 1.2e-57 227.6 178 59.0
AUR62037409 Chenopodium quinoa HOM05D004144 ORTHO05D004902 1.7e-56 223.8 142 78.9
Cre01.g055550 Chlamydomonas reinhardtii HOM05D004144 ORTHO05D004902 2.2e-56 223.4 190 59.5
SHI20752 Sapria himalayana HOM05D004144 ORTHO05D004902 3.3e-52 209.5 135 76.3
Hma1.2p1_0158F.1_g069830 Hydrangea macrophylla HOM05D004144 ORTHO05D004902 6.5e-48 195.3 227 51.5
PRCOL_00006103 Prasinoderma coloniale HOM05D004144 ORTHO05D004902 1.8e-45 187.2 188 51.6
Haze_26263 Corylus avellana HOM05D004144 ORTHO05D004902 3.7e-43 179.5 222 43.2
Haze_26986 Corylus avellana HOM05D004144 ORTHO05D004902 1.1e-39 167.9 178 45.5
BcaNung07044 Brassica carinata HOM05D004144 ORTHO05D004902 2.0e-36 157.1 94 79.8
Cfa022599 Carpinus fangiana HOM05D004144 ORTHO05D004902 5.7e-36 155.6 147 55.8
CsaV3_UNG141080 Cucumis sativus L. HOM05D004144 ORTHO05D004902 5.7e-36 155.6 101 76.2
CsaV3_UNG216460 Cucumis sativus L. HOM05D004144 ORTHO05D004902 5.7e-36 155.6 101 76.2
BcaB03g15782 Brassica carinata HOM05D004144 ORTHO05D004902 1.0e-32 144.8 136 56.6
DCAR_025183 Daucus carota HOM05D002069 ORTHO05D004902 5.0e-32 142.5 77 89.6
BcaB03g13511 Brassica carinata HOM05D004144 ORTHO05D004902 1.1e-31 141.4 179 49.2
Pp3c16_1230 Physcomitrium patens HOM05D004144 ORTHO05D004902 2.5e-31 140.2 170 49.4
BcaB08g36056 Brassica carinata HOM05D004144 ORTHO05D004902 3.3e-31 139.8 100 74.0
Gohir.A10G080150 Gossypium hirsutum HOM05D004144 ORTHO05D004902 2.0e-28 130.6 97 70.1
BolC9t57687H Brassica oleracea HOM05D004144 ORTHO05D004902 1.7e-27 127.5 92 77.2
TAR002G0001 Trochodendron aralioides HOM05D004144 ORTHO05D004902 3.5e-25 119.8 170 44.7
Dinv36681 Davidia involucrata HOM05D004144 ORTHO05D004902 3.0e-24 116.7 107 57.0
BcaNung06862 Brassica carinata HOM05D004144 ORTHO05D004902 5.0e-24 115.9 91 64.8
AUR62038774 Chenopodium quinoa HOM05D004144 ORTHO05D004902 7.3e-23 112.1 75 73.3
Gohir.A08G125401 Gossypium hirsutum HOM05D004144 ORTHO05D004902 1.8e-21 107.5 107 57.0
BcaC04g20051 Brassica carinata HOM05D004144 ORTHO05D004902 5.2e-21 105.9 95 63.2
arahy.Tifrunner.gnm1.ann1.GZZ31L Arachis hypogaea HOM05D001327 ORTHO05D004902 8.3e-19 98.6 65 73.8
BcaC02g12462 Brassica carinata HOM05D004144 ORTHO05D004902 3.2e-18 96.7 69 66.7
Oeu009435.1 Olea europaea HOM05D004144 ORTHO05D004902 7.0e-18 95.5 48 93.8
C09p48370 Brassica napus HOM05D004144 ORTHO05D004902 4.6e-17 92.8 85 58.8
HanXRQChr03g0088171 Helianthus annuus HOM05D004144 ORTHO05D004902 1.7e-16 90.9 50 84.0
HanXRQChr13g0395861 Helianthus annuus HOM05D004144 ORTHO05D004902 1.7e-16 90.9 50 84.0
arahy.Tifrunner.gnm1.ann1.9TQH81 Arachis hypogaea HOM05D001327 ORTHO05D001271 2.3e-16 90.5 62 72.6
BcaNung06861 Brassica carinata HOM05D004144 ORTHO05D004902 3.0e-16 90.1 69 63.8
BcaC05g24626 Brassica carinata HOM05D004144 ORTHO05D004902 3.6e-14 83.2 54 72.2
arahy.Tifrunner.gnm1.ann1.X1YH8V Arachis hypogaea HOM05D004144 ORTHO05D038922 3.4e-12 76.6 63 65.1
CDE06G2511 Ceratophyllum demersum HOM05D004144 ORTHO05D004902 2.9e-11 73.6 58 63.8
Oeu009434.1 Olea europaea HOM05D004144 ORTHO05D004902 1.4e-10 71.2 36 94.4


User provided reference genes

Program Settings