Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G612.3 Capsicum annuum HOM05D000729 ORTHO05D001063 4.4e-59 231.1 117 100.0
CAN.G1167.12 Capsicum annuum HOM05D000729 ORTHO05D001063 2.3e-52 208.8 117 93.2
Gohir.A03G043250 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.4e-43 177.9 92 96.7
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.4e-43 177.9 92 96.7
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 4.4e-43 177.9 92 96.7
Potri.013G139112 Populus trichocarpa HOM05D000729 ORTHO05D001063 9.8e-43 176.8 92 95.7
C06p23140 Brassica napus HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolC2t10586H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolSC29t60627H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolSC35t60718H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolSC37t60784H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolSC49t61156H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BolSC49t61215H Brassica oleracea HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BraSC138t45543Z Brassica rapa HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
BraSC58t46449Z Brassica rapa HOM05D000729 ORTHO05D001063 1.3e-42 176.4 92 95.7
Gohir.A09G045500 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.7e-42 176.0 92 95.7
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr00c0747g0577151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr02g0059631 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr15g0489701 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
RcHm_v2.0_CPg0501741 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
RcHm_v2.0_CPg0502671 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
Sed0008128 Sechium edule HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
Sed0019191 Sechium edule HOM05D000729 ORTHO05D001063 2.2e-42 175.6 92 95.7
C06p21330 Brassica napus HOM05D000729 ORTHO05D001063 2.8e-42 175.3 92 94.6
HanXRQChr00c0214g0572641 Helianthus annuus HOM05D000729 ORTHO05D001063 2.8e-42 175.3 105 85.7
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 3.7e-42 174.9 92 94.6
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 3.7e-42 174.9 92 94.6
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 3.7e-42 174.9 92 94.6
HanXRQChr13g0413721 Helianthus annuus HOM05D000729 ORTHO05D001063 6.3e-42 174.1 92 94.6
HanXRQChr13g0413871 Helianthus annuus HOM05D000729 ORTHO05D001063 6.3e-42 174.1 92 94.6
Hund27858 Selenicereus undatus HOM05D000729 ORTHO05D001063 6.3e-42 174.1 92 94.6
Nn029s41588 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
Nn031s41603 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
Nn206s45069 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
Nn219s45284 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
Nn233s45561 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
Nn269s46005 Nelumbo nucifera HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 94.6
RcHm_v2.0_Chr5g0051091 Rosa chinensis HOM05D000729 ORTHO05D001063 8.3e-42 173.7 92 93.5
Migut.F01470 Erythranthe guttata HOM05D000729 ORTHO05D001063 1.1e-41 173.3 92 94.6
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 1.1e-41 173.3 92 94.6
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 1.1e-41 173.3 92 94.6
Hund07988 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund08790 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund22780 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund27635 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund27885 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund27951 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund28172 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund28540 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund28970 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund29048 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund29105 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund29118 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund29149 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Hund29155 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.4e-41 172.9 92 93.5
Thhalv10011731m.g Eutrema salsugineum HOM05D000729 ORTHO05D001063 1.8e-41 172.6 92 93.5
HanXRQChr09g0249681 Helianthus annuus HOM05D000729 ORTHO05D001063 1.8e-41 172.6 92 94.6
Gohir.A10G100333 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-41 172.2 92 94.6
Eucgr.I01854 Eucalyptus grandis HOM05D000729 ORTHO05D001063 3.1e-41 171.8 92 93.5
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 4.1e-41 171.4 92 93.5
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 4.1e-41 171.4 92 93.5
Solyc09g061460.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 5.4e-41 171.0 92 93.5
CAN.G30.9 Capsicum annuum HOM05D000729 ORTHO05D001063 2.0e-40 169.1 92 92.4
Hund03965 Selenicereus undatus HOM05D000729 ORTHO05D001063 2.0e-40 169.1 92 91.3
Gohir.D01G134200 Gossypium hirsutum HOM05D000729 ORTHO05D001063 3.5e-40 168.3 102 85.3
CSS0034759 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.0e-39 166.8 90 92.2
CAN.G398.11 Capsicum annuum HOM05D000729 ORTHO05D001063 3.8e-39 164.9 92 89.1
CAN.G1185.9 Capsicum annuum HOM05D000729 ORTHO05D001063 6.6e-39 164.1 92 89.1
Hund01554 Selenicereus undatus HOM05D000729 ORTHO05D001063 1.2e-37 159.8 86 94.2
Gohir.D01G101826 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.6e-37 159.5 86 94.2
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 1.0e-36 156.8 88 89.8
Nitab4.5_0004920g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.0e-36 156.8 87 90.8
Peaxi162Scf00014g00287 Petunia axillaris HOM05D000729 ORTHO05D001063 5.2e-36 154.5 82 95.1
BolSC56t61238H Brassica oleracea HOM05D000729 ORTHO05D001063 8.9e-36 153.7 120 72.5
arahy.Tifrunner.gnm1.ann1.B0WG4N Arachis hypogaea HOM05D000729 ORTHO05D001063 4.4e-35 151.4 86 89.5
CAN.G1298.16 Capsicum annuum HOM05D000729 ORTHO05D001063 9.8e-35 150.2 78 97.4
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 1.3e-34 149.8 86 88.4
arahy.Tifrunner.gnm1.ann1.6Q4XIG Arachis hypogaea HOM05D000729 ORTHO05D001063 1.7e-34 149.4 86 88.4
arahy.Tifrunner.gnm1.ann1.984MHU Arachis hypogaea HOM05D000729 ORTHO05D001063 4.1e-33 144.8 86 86.0
CAN.G1738.18 Capsicum annuum HOM05D000729 ORTHO05D001063 4.1e-33 144.8 78 92.3
Sed0012918 Sechium edule HOM05D000729 ORTHO05D001063 5.4e-33 144.4 92 84.8
CiPaw.03G002000 Carya illinoinensis HOM05D000729 ORTHO05D001063 1.6e-32 142.9 81 91.4
HanXRQChr13g0413651 Helianthus annuus HOM05D000729 ORTHO05D001063 3.5e-32 141.7 77 93.5
Gohir.A04G039450 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.0e-31 140.2 74 95.9
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.0e-31 140.2 74 95.9
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 1.0e-31 140.2 74 95.9
Gohir.D08G147600 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.7e-31 139.4 84 83.3
Nitab4.5_0004929g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-31 139.0 86 84.9
arahy.Tifrunner.gnm1.ann1.E8A372 Arachis hypogaea HOM05D000729 ORTHO05D001063 2.9e-31 138.7 83 84.3
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 5.0e-31 137.9 74 94.6
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 5.0e-31 137.9 74 94.6
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 5.0e-31 137.9 74 94.6
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 5.0e-31 137.9 74 94.6
Hund27921 Selenicereus undatus HOM05D000729 ORTHO05D001063 8.6e-31 137.1 75 92.0
HanXRQChr00c0379g0574301 Helianthus annuus HOM05D000729 ORTHO05D001063 1.1e-30 136.7 77 90.9
BraSC143t45669Z Brassica rapa HOM05D000729 ORTHO05D001063 2.5e-30 135.6 74 91.9
HanXRQChr00c0780g0577311 Helianthus annuus HOM05D000729 ORTHO05D001063 2.5e-30 135.6 87 81.6
Lalb_Chr07g0191631 Lupinus albus HOM05D000729 ORTHO05D001063 3.3e-30 135.2 74 93.2
CSS0018773 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.6e-29 132.9 87 78.2
Nitab4.5_0006542g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.8e-29 132.1 71 94.4
Solyc11g021120.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.8e-29 132.1 77 89.6
Gohir.A09G093100 Gossypium hirsutum HOM05D000729 ORTHO05D001063 8.0e-29 130.6 74 89.2
Phvul.003G089802 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.4e-28 129.8 74 89.2
Phvul.009G090272 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 1.4e-28 129.8 74 89.2
Gohir.D02G152152 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.8e-28 129.4 74 90.5
Gohir.A05G306433 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.3e-28 129.0 86 80.2
HanXRQChr16g0530791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.3e-28 129.0 69 94.2
Nitab4.5_0000729g0070 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.0e-28 128.6 92 77.2
HanXRQChr02g0059781 Helianthus annuus HOM05D000729 ORTHO05D001063 5.2e-28 127.9 72 90.3
Gohir.A06G098106 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.5e-27 126.3 84 81.0
Nitab4.5_0012558g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.5e-27 126.3 71 90.1
SalBow6G4786 Salvia bowleyana HOM05D000729 ORTHO05D001063 3.4e-27 125.2 66 95.5
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 9.8e-27 123.6 68 92.6
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 9.8e-27 123.6 92 71.7
Psat5g286120 Pisum sativum HOM05D000729 ORTHO05D001063 2.2e-26 122.5 74 83.8
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 4.1e-25 118.2 61 95.1
MD01G1004600 Malus domestica HOM05D000729 ORTHO05D001063 1.6e-24 116.3 74 81.1
Gohir.A05G307266 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.0e-24 115.9 60 96.7
Solyc09g050070.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 3.5e-24 115.2 61 95.1
arahy.Tifrunner.gnm1.ann1.NY619X Arachis hypogaea HOM05D000729 ORTHO05D001063 7.8e-24 114.0 72 86.1
Lalb_Chr07g0191591 Lupinus albus HOM05D000729 ORTHO05D001063 1.7e-23 112.8 63 92.1
CsaV3_UNG208970 Cucumis sativus L. HOM05D000729 ORTHO05D001063 1.5e-22 109.8 54 100.0
MBI05_g23317_MAGBIO Magnolia biondii HOM05D000729 ORTHO05D001063 5.6e-22 107.8 75 77.3
Os04g0309100 Oryza sativa ssp. japonica HOM05D000729 ORTHO05D001063 5.6e-22 107.8 69 82.6
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 7.3e-22 107.5 63 87.3
EL10As10g23961 Beta vulgaris HOM05D000963 ORTHO05D005131 2.1e-21 105.9 84 70.2
Nitab4.5_0000684g0120 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.8e-21 105.5 71 78.9
Peaxi162Scf00005g04915 Petunia axillaris HOM05D000729 ORTHO05D001063 8.0e-21 104.0 67 85.1
Lalb_Chr25g0281801 Lupinus albus HOM05D000729 ORTHO05D001063 8.9e-20 100.5 59 88.1
HanXRQChr00c0264g0572831 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-19 99.8 53 94.3
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-19 99.8 53 94.3
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 1.5e-19 99.8 53 94.3
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.6e-19 99.0 57 87.7
Hund23965 Selenicereus undatus HOM05D000729 ORTHO05D001063 3.4e-19 98.6 63 82.5
HanXRQChr13g0413801 Helianthus annuus HOM05D000729 ORTHO05D001063 7.5e-19 97.4 66 77.3
arahy.Tifrunner.gnm1.ann1.M13VEQ Arachis hypogaea HOM05D000729 ORTHO05D001063 9.8e-19 97.1 51 94.1
Nitab4.5_0012234g0040 Nicotiana tabacum HOM05D000729 ORTHO05D001063 9.8e-19 97.1 63 81.0
Lsat_1_v5_gn_8_77240 Lactuca sativa HOM05D000729 ORTHO05D001063 1.3e-18 96.7 53 90.6
HanXRQChr13g0399651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.9e-18 95.5 53 90.6
Solyc06g009580.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.9e-18 95.5 49 95.9
Nitab4.5_0003957g0020 Nicotiana tabacum HOM05D000729 ORTHO05D002596 1.2e-16 90.1 53 84.9
Gohir.A08G078001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.1e-16 89.4 56 80.4
BolSC45t60896H Brassica oleracea HOM05D000729 ORTHO05D001063 2.3e-15 85.9 46 89.1
HanXRQChr08g0227771 Helianthus annuus HOM05D000729 ORTHO05D001063 3.0e-15 85.5 56 76.8
Sc20g0001970 Simmondsia chinensis HOM05D000680 ORTHO05D000738 6.6e-15 84.3 46 89.1
RcHm_v2.0_Chr2g0118391 Rosa chinensis HOM05D000729 ORTHO05D001063 8.6e-15 84.0 46 89.1
Solyc02g011890.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.6e-15 84.0 55 76.4
Nitab4.5_0004533g0060 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.3e-14 82.0 59 72.9
Nitab4.5_0007979g0050 Nicotiana tabacum HOM05D000729 ORTHO05D001063 3.3e-14 82.0 84 57.1
Phvul.002G064700 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 5.6e-14 81.3 46 84.8
Medtr4g103280 Medicago truncatula HOM05D000729 ORTHO05D002596 1.6e-13 79.7 44 90.9
Hund03962 Selenicereus undatus HOM05D000729 ORTHO05D002596 1.5e-11 73.2 45 86.7
Potri.008G207100 Populus trichocarpa HOM05D000729 ORTHO05D001063 2.6e-11 72.4 97 49.5
HanXRQChr00c0634g0576581 Helianthus annuus HOM05D000729 ORTHO05D001063 3.7e-10 68.6 33 97.0
Gohir.A05G089950 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.4e-10 67.8 36 91.7
Lsat_1_v5_gn_6_40860 Lactuca sativa HOM05D000729 ORTHO05D001063 2.1e-08 62.8 52 63.5
Cc00_g23030 Coffea canephora HOM05D000729 ORTHO05D001063 4.6e-08 61.6 39 79.5
Nitab4.5_0000174g0030 Nicotiana tabacum HOM05D000729 ORTHO05D001063 2.3e-07 59.3 56 60.7
Lalb_Chr25g0281891 Lupinus albus HOM05D000729 ORTHO05D001063 3.9e-07 58.5 70 51.4
SMO086G0067 Selaginella moellendorffii HOM05D000729 ORTHO05D001063 1.9e-06 56.2 83 47.0


User provided reference genes

Program Settings