Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 6.5e-118 427.6 239 100.0
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 5.0e-86 321.6 237 81.9
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 1.6e-63 246.9 198 79.8
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.5e-50 203.8 235 48.9
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.5e-50 203.8 235 48.9
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.4e-50 202.2 235 48.5
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 4.9e-49 198.7 251 51.4
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 9.2e-48 194.5 272 45.6
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 9.2e-48 194.5 222 50.5
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.9e-45 186.8 221 49.3
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 3.3e-45 186.0 257 50.6
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.2e-44 184.1 219 53.0
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 1.2e-44 184.1 230 48.3
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 6.2e-44 181.8 250 47.6
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 1.1e-43 181.0 279 48.4
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 1.8e-43 180.3 252 49.2
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 2.4e-43 179.9 267 43.1
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 5.2e-43 178.7 254 49.2
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.2e-43 178.7 246 45.9
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 6.9e-43 178.3 228 51.3
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 9.0e-43 177.9 250 54.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.0e-42 176.8 257 49.0
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.4e-42 175.6 259 48.6
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 4.4e-42 175.6 215 47.0
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 9.9e-42 174.5 276 45.7
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 9.9e-42 174.5 249 47.8
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.3e-41 174.1 231 48.1
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.3e-41 174.1 239 51.5
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.3e-41 174.1 259 45.6
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 2.2e-41 173.3 222 55.0
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 3.8e-41 172.6 206 48.5
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.4e-41 171.8 218 50.0
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 2.4e-40 169.9 251 50.2
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 3.2e-40 169.5 246 47.2
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 3.2e-40 169.5 276 43.8
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 4.2e-40 169.1 228 50.9
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 5.4e-40 168.7 228 54.8
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 1.6e-39 167.2 212 53.8
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 4.6e-39 165.6 241 46.1
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 4.6e-39 165.6 225 47.6
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.6e-39 165.6 229 46.3
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-38 164.1 251 45.8
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 1.7e-38 163.7 207 51.7
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.3e-38 163.3 293 40.3
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 3.0e-38 162.9 269 43.9
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.9e-38 162.5 174 60.3
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 6.6e-38 161.8 174 62.1
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 6.6e-38 161.8 204 52.0
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 6.6e-38 161.8 211 45.5
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 1.1e-37 161.0 215 54.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-37 160.6 239 45.6
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.9e-37 160.2 204 48.0
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 3.3e-37 159.5 263 44.5
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.6e-37 157.9 277 42.6
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 9.6e-37 157.9 277 42.6
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 9.6e-37 157.9 233 46.4
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 1.3e-36 157.5 268 41.8
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.3e-36 157.5 261 47.9
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.6e-36 156.0 228 44.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.6e-36 156.0 281 41.6
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 8.1e-36 154.8 221 44.8
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 1.1e-35 154.5 204 47.5
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.2e-34 151.0 277 48.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.5e-34 150.6 245 44.9
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.5e-34 150.6 230 43.9
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 2.0e-34 150.2 257 40.9
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.6e-34 149.8 240 45.0
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 2.6e-34 149.8 162 59.3
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 3.4e-34 149.4 219 46.1
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 2.9e-33 146.4 217 45.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 8.4e-33 144.8 235 42.1
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 4.2e-32 142.5 235 42.6
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.6e-31 140.6 267 42.7
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 1.6e-31 140.6 100 73.0
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.1e-31 140.2 210 51.0
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 2.7e-31 139.8 197 44.7
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 4.6e-31 139.0 224 43.3
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.9e-29 133.7 233 43.3
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 5.6e-29 132.1 216 43.5
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 7.4e-29 131.7 259 45.6
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 1.3e-28 131.0 212 42.9
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 1.6e-28 130.6 209 43.5
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.6e-28 130.6 215 45.6
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 3.7e-28 129.4 215 46.5
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.8e-28 129.0 209 43.5
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 8.1e-28 128.3 213 42.7
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.1e-27 127.9 203 44.3
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 1.1e-27 127.9 236 40.7
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.8e-27 127.1 165 48.5
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 3.4e-26 122.9 261 43.7
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 2.9e-25 119.8 213 40.8
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 3.8e-25 119.4 213 40.8
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 3.8e-25 119.4 213 40.8
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 3.8e-25 119.4 213 40.8
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.8e-25 119.4 99 63.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.4e-24 117.5 212 40.6
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 5.5e-24 115.5 90 67.8
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 7.1e-24 115.2 202 42.6
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 7.1e-24 115.2 202 42.6
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 3.5e-23 112.8 101 60.4
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 7.9e-23 111.7 175 48.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.0e-22 111.3 218 44.5
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.8e-22 110.5 213 46.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 3.9e-22 109.4 119 53.8
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 5.1e-22 109.0 252 41.3
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 3.3e-21 106.3 204 41.7
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 3.3e-21 106.3 157 43.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 4.3e-21 105.9 106 59.4
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 4.3e-21 105.9 191 41.9
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 5.6e-21 105.5 201 44.8
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 7.4e-21 105.1 105 60.0
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 9.6e-21 104.8 215 37.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 9.6e-21 104.8 218 37.6
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.6e-20 104.0 201 42.8
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 4.8e-20 102.4 197 39.1
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 8.2e-20 101.7 218 44.0
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.4e-19 100.9 256 34.8
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.4e-19 100.9 104 57.7
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 3.1e-19 99.8 202 39.1
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 5.3e-19 99.0 115 48.7
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 9.0e-19 98.2 112 53.6
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 9.0e-19 98.2 112 53.6
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.6e-18 96.7 64 71.9
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 5.8e-18 95.5 90 54.4
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 4.9e-17 92.4 52 78.8
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 4.9e-17 92.4 173 38.2
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 8.4e-17 91.7 202 44.1
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 8.4e-17 91.7 207 39.1
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 8.4e-17 91.7 44 90.9
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 4.2e-16 89.4 196 42.9
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 5.5e-16 89.0 108 52.8
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 5.5e-16 89.0 210 38.6
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 5.5e-16 89.0 108 52.8
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.1e-15 87.0 223 39.9
Peaxi162Scf00382g00826 Petunia axillaris HOM05D004123 ORTHO05D004768 2.1e-15 87.0 63 73.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 6.0e-15 85.5 266 36.5
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 3.0e-14 83.2 177 44.1
Migut.L01390 Erythranthe guttata HOM05D004123 ORTHO05D004768 6.7e-14 82.0 179 46.4
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 1.8e-11 73.9 211 35.5
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 1.5e-10 70.9 260 28.8
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.0e-10 70.5 66 56.1
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.4e-10 69.7 56 58.9
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.4e-10 69.7 56 58.9
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 5.9e-10 68.9 61 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 7.7e-10 68.6 62 58.1
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 7.7e-10 68.6 61 54.1
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 8.5e-09 65.1 63 49.2
CSS0040364 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 1.1e-08 64.7 210 31.4
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 1.4e-08 64.3 49 63.3
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 2.5e-08 63.5 179 35.8
DCAR_007247 Daucus carota HOM05D004123 ORTHO05D004768 5.5e-08 62.4 178 44.4
CDE04G0840 Ceratophyllum demersum HOM05D000793 ORTHO05D000783 1.2e-07 61.2 103 37.9
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 1.6e-07 60.8 199 39.7
ECA233G4891 Erigeron canadensis HOM05D004123 ORTHO05D004768 1.6e-07 60.8 46 69.6
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 1.4e-06 57.8 161 36.0
CDE06G0381 Ceratophyllum demersum HOM05D001250 ORTHO05D000627 1.8e-06 57.4 82 36.6
Duzib235G1042 Durio zibethinus HOM05D000333 ORTHO05D000190 1.8e-06 57.4 98 33.7
C07p39490 Brassica napus HOM05D000333 ORTHO05D000190 3.9e-06 56.2 99 38.4
Lsat_1_v5_gn_8_40320 Lactuca sativa HOM05D001250 ORTHO05D000627 5.1e-06 55.8 92 40.2
CDE12G0399 Ceratophyllum demersum HOM05D004610 ORTHO05D001148 6.7e-06 55.5 101 34.7
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.7e-06 55.5 204 37.3
BcaC06g30727 Brassica carinata HOM05D000333 ORTHO05D000190 8.8e-06 55.1 96 38.5
BcaC06g30748 Brassica carinata HOM05D000333 ORTHO05D000190 8.8e-06 55.1 84 40.5
BolC7t44468H Brassica oleracea HOM05D000333 ORTHO05D000190 8.8e-06 55.1 84 40.5
Eucgr.F02505 Eucalyptus grandis HOM05D001250 ORTHO05D000627 8.8e-06 55.1 84 35.7


User provided reference genes

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