Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 5.8e-43 177.2 91 100.0
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 7.1e-33 143.7 79 92.4
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 5.1e-31 137.5 79 86.1
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 6.7e-31 137.1 79 84.8
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 6.7e-31 137.1 79 84.8
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 6.7e-31 137.1 79 83.5
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 8.7e-31 136.7 79 83.5
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 8.7e-31 136.7 79 83.5
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 8.7e-31 136.7 79 86.1
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 1.1e-30 136.3 79 86.1
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.5e-30 136.0 78 84.6
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 1.5e-30 136.0 78 84.6
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 1.9e-30 135.6 79 86.1
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 2.5e-30 135.2 79 83.5
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 3.3e-30 134.8 79 83.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 3.3e-30 134.8 79 83.5
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 3.3e-30 134.8 78 83.3
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 4.3e-30 134.4 79 86.1
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.6e-30 134.0 79 84.8
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 5.6e-30 134.0 79 84.8
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 5.6e-30 134.0 79 86.1
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 5.6e-30 134.0 79 82.3
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 7.4e-30 133.7 79 83.5
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 9.6e-30 133.3 79 82.3
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 1.3e-29 132.9 78 82.1
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 1.3e-29 132.9 79 83.5
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.3e-29 132.9 78 84.6
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.7e-29 131.3 79 84.8
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 6.2e-29 130.6 79 82.3
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 6.2e-29 130.6 79 83.5
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 6.2e-29 130.6 79 82.3
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 6.2e-29 130.6 79 79.7
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 8.2e-29 130.2 78 82.1
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 1.1e-28 129.8 78 82.1
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 1.1e-28 129.8 79 81.0
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 1.1e-28 129.8 79 81.0
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 1.1e-28 129.8 79 81.0
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 1.1e-28 129.8 79 81.0
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 1.4e-28 129.4 79 81.0
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 1.4e-28 129.4 79 78.5
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 1.4e-28 129.4 79 78.5
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 82.3
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 79.7
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 79.7
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 81.0
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 78.5
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 1.8e-28 129.0 79 81.0
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 2.4e-28 128.6 78 82.1
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 2.4e-28 128.6 79 79.7
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 3.1e-28 128.3 87 72.4
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 3.1e-28 128.3 87 72.4
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 3.1e-28 128.3 87 72.4
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 3.1e-28 128.3 79 83.5
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 3.1e-28 128.3 78 83.3
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 4.0e-28 127.9 87 72.4
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 5.3e-28 127.5 79 78.5
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 5.3e-28 127.5 79 78.5
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 5.3e-28 127.5 87 72.4
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 5.3e-28 127.5 88 71.6
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 5.3e-28 127.5 98 71.4
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 6.9e-28 127.1 79 81.0
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 1.2e-27 126.3 78 79.5
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 1.2e-27 126.3 79 78.5
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.2e-27 126.3 78 80.8
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 1.2e-27 126.3 78 80.8
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 1.5e-27 125.9 79 75.9
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 2.0e-27 125.6 79 75.9
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 2.0e-27 125.6 79 79.7
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 3.4e-27 124.8 79 81.0
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 4.5e-27 124.4 78 78.2
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 5.8e-27 124.0 79 78.5
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 7.6e-27 123.6 79 78.5
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 1.3e-26 122.9 79 75.9
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 1.3e-26 122.9 79 74.7
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 1.7e-26 122.5 78 78.2
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 2.2e-26 122.1 79 74.7
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 3.8e-26 121.3 78 76.9
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 4.9e-26 120.9 79 72.2
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 4.9e-26 120.9 79 74.7
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 4.9e-26 120.9 79 74.7
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 4.9e-26 120.9 78 76.9
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 6.5e-26 120.6 83 71.1
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 6.5e-26 120.6 79 77.2
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 6.5e-26 120.6 78 79.5
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 8.4e-26 120.2 87 72.4
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 1.4e-25 119.4 75 80.0
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 3.2e-25 118.2 78 71.8
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 4.2e-25 117.9 69 82.6
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 4.2e-25 117.9 79 73.4
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 7.1e-25 117.1 75 78.7
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 7.1e-25 117.1 78 74.4
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 4.6e-24 114.4 69 79.7
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 6.0e-24 114.0 98 63.3
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 3.0e-23 111.7 79 68.4
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 3.0e-23 111.7 79 65.8
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 3.9e-23 111.3 79 65.8
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 6.7e-23 110.5 79 65.8
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 8.7e-23 110.2 79 65.8
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 8.7e-23 110.2 78 67.9
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 1.9e-22 109.0 89 59.6
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 1.9e-22 109.0 79 68.4
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 2.5e-22 108.6 78 64.1
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 4.3e-22 107.8 119 52.9
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 7.4e-22 107.1 79 63.3
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 9.7e-22 106.7 89 58.4
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.6e-21 105.9 89 58.4
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 3.7e-21 104.8 79 68.4
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 6.3e-21 104.0 80 61.2
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 8.2e-21 103.6 87 57.5
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 1.4e-20 102.8 79 63.3
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.2e-19 99.8 79 64.6
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 1.0e-18 96.7 78 60.3
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 2.5e-17 92.0 47 100.0
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.2e-17 91.7 75 60.0
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 4.2e-17 91.3 75 60.0
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 6.1e-16 87.4 81 53.1
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 1.8e-15 85.9 67 61.2
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 1.8e-12 75.9 47 78.7
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.5e-09 65.5 47 68.1
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 4.2e-09 64.7 40 87.5
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 7.2e-09 63.9 32 93.8


User provided reference genes

Program Settings