Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G61.5 Capsicum annuum HOM05D003152 ORTHO05D031617 1.4e-33 145.6 70 100.0
CAN.G1500.8 Capsicum annuum HOM05D003152 ORTHO05D031617 3.3e-22 107.8 59 86.4
CAN.G732.11 Capsicum annuum HOM05D003152 ORTHO05D004094 1.7e-10 68.9 33 93.9
Nitab4.5_0000021g1070 Nicotiana tabacum HOM05D003152 ORTHO05D004094 1.7e-10 68.9 33 93.9
Nitab4.5_0004670g0040 Nicotiana tabacum HOM05D003152 ORTHO05D004094 1.7e-10 68.9 33 93.9
Peaxi162Scf00516g00327 Petunia axillaris HOM05D003152 ORTHO05D004094 3.8e-10 67.8 33 90.9
Solyc03g097470.3 Solanum lycopersicum HOM05D003152 ORTHO05D004094 3.8e-10 67.8 33 90.9
Sopen03g028240 Solanum pennellii HOM05D003152 ORTHO05D004094 3.8e-10 67.8 33 90.9
vmacro14103 Vaccinium macrocarpon HOM05D003152 ORTHO05D004094 8.5e-10 66.6 33 87.9
ECA246G1886 Erigeron canadensis HOM05D003152 ORTHO05D004094 1.1e-09 66.2 33 87.9
Actinidia27454 Actinidia chinensis HOM05D003152 ORTHO05D004094 1.5e-09 65.9 45 71.1
CSS0031797 Camellia sinensis var. sinensis HOM05D003152 ORTHO05D004094 1.5e-09 65.9 45 71.1
MSTRG.26221 Avicennia marina HOM05D003152 ORTHO05D004094 1.9e-09 65.5 45 68.9
Rhsim07G0104900 Rhododendron simsii HOM05D003152 ORTHO05D004094 1.9e-09 65.5 33 84.8
SalBow6G1354 Salvia bowleyana HOM05D003152 ORTHO05D004094 1.9e-09 65.5 33 87.9
MSTRG.19706 Avicennia marina HOM05D003152 ORTHO05D004094 2.5e-09 65.1 45 68.9
CSS0013092 Camellia sinensis var. sinensis HOM05D003152 ORTHO05D004094 2.5e-09 65.1 45 68.9
Cc06_g13250 Coffea canephora HOM05D003152 ORTHO05D004094 2.5e-09 65.1 45 68.9
SGA_v2.0_scaffold69G23257 Striga asiatica HOM05D003152 ORTHO05D004094 2.5e-09 65.1 33 84.8
ECA233G4900 Erigeron canadensis HOM05D003152 ORTHO05D004094 3.2e-09 64.7 33 84.8
HanXRQChr02g0049441 Helianthus annuus HOM05D003152 ORTHO05D004094 3.2e-09 64.7 33 84.8
HanXRQChr05g0148701 Helianthus annuus HOM05D003152 ORTHO05D004094 3.2e-09 64.7 33 84.8
Lsat_1_v5_gn_6_1880 Lactuca sativa HOM05D003152 ORTHO05D004094 3.2e-09 64.7 33 84.8
SalBow1G3248 Salvia bowleyana HOM05D003152 ORTHO05D004094 3.2e-09 64.7 52 59.6
vmacro06967 Vaccinium macrocarpon HOM05D003152 ORTHO05D004094 3.2e-09 64.7 33 84.8
QL06p053048 Quercus lobata HOM05D003152 ORTHO05D004094 4.2e-09 64.3 33 84.8
Sabra01G0093100 Salix brachista HOM05D003152 ORTHO05D004094 4.2e-09 64.3 33 84.8
TWI81G1045 Tripterygium wilfordii HOM05D003152 ORTHO05D004094 4.2e-09 64.3 33 84.8
Actinidia02109 Actinidia chinensis HOM05D003152 ORTHO05D004094 5.5e-09 63.9 45 66.7
Ciclev10020462m.g Citrus clementina HOM05D003152 ORTHO05D004094 7.2e-09 63.5 33 81.8
Lj8C258T8 Lonicera japonica HOM05D003152 ORTHO05D004094 7.2e-09 63.5 33 81.8
Nitab4.5_0000011g0260 Nicotiana tabacum HOM05D003152 ORTHO05D004094 7.2e-09 63.5 32 87.5
Oeu002545.1 Olea europaea HOM05D003152 ORTHO05D004094 7.2e-09 63.5 32 84.4
Oeu009849.2 Olea europaea HOM05D003152 ORTHO05D004094 7.2e-09 63.5 45 66.7
Aqoxy1G02009 Aquilegia oxysepala HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
Aqoxy5G03922 Aquilegia oxysepala HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
Eucgr.E00458 Eucalyptus grandis HOM05D003152 ORTHO05D004094 9.4e-09 63.2 45 66.7
Lsat_1_v5_gn_6_109081 Lactuca sativa HOM05D003152 ORTHO05D004094 9.4e-09 63.2 32 84.4
Manes.01G076900 Manihot esculenta HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
Nitab4.5_0001108g0030 Nicotiana tabacum HOM05D003152 ORTHO05D004094 9.4e-09 63.2 34 82.4
Oeu056513.1 Olea europaea HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
Potri.001G120900 Populus trichocarpa HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
Rhsim03G0143900 Rhododendron simsii HOM05D003152 ORTHO05D004094 9.4e-09 63.2 32 84.4
TWI60G0644 Tripterygium wilfordii HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
unitig_21.g20649 Utricularia gibba HOM05D003152 ORTHO05D004094 9.4e-09 63.2 33 81.8
CANSAT21G0390 Cannabis sativa HOM05D003152 ORTHO05D004094 1.2e-08 62.8 33 78.8
GSVIVG01001278001 Vitis vinifera HOM05D003152 ORTHO05D004094 1.2e-08 62.8 33 81.8
GSVIVG01004779001 Vitis vinifera HOM05D003152 ORTHO05D004094 1.2e-08 62.8 33 81.8
Ah.02g115360 Amaranthus hybridus HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 78.8
Cfa012769 Carpinus fangiana HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
CiPaw.11G150900 Carya illinoinensis HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
Haze_07861 Corylus avellana HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
Manes.02G036200 Manihot esculenta HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
Nn2g11781 Nelumbo nucifera HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
Nn8g39222 Nelumbo nucifera HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
Sopen08g002520 Solanum pennellii HOM05D003152 ORTHO05D004094 1.6e-08 62.4 32 84.4
TAR629G0380 Trochodendron aralioides HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
TAR636G2130 Trochodendron aralioides HOM05D003152 ORTHO05D004094 1.6e-08 62.4 33 81.8
CiPaw.12G107100 Carya illinoinensis HOM05D003152 ORTHO05D004094 2.1e-08 62.0 33 78.8
Peaxi162Scf00133g00053 Petunia axillaris HOM05D003152 ORTHO05D004094 2.1e-08 62.0 32 84.4
Peaxi162Scf01440g00025 Petunia axillaris HOM05D003152 ORTHO05D020396 2.1e-08 62.0 35 77.1
Ah.12g062230 Amaranthus hybridus HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
CAN.G285.10 Capsicum annuum HOM05D003152 ORTHO05D004094 2.7e-08 61.6 32 84.4
ClCG01G003860 Citrullus lanatus HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
MELO3C005558.2 Cucumis melo HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
CsaV3_5G003990 Cucumis sativus L. HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
FvH4_5g00250 Fragaria vesca HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
FAN04G1135 Fragaria x ananassa HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
FAN08G1487 Fragaria x ananassa HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
FAN13G2916 Fragaria x ananassa HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
FAN18G0254 Fragaria x ananassa HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
Lj8C337T1 Lonicera japonica HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
Prupe.5G075100 Prunus persica HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
SHI20570 Sapria himalayana HOM05D003152 ORTHO05D004094 2.7e-08 61.6 33 78.8
PGSC0003DMG400026308 Solanum tuberosum HOM05D003152 ORTHO05D004094 2.7e-08 61.6 32 84.4
arahy.Tifrunner.gnm1.ann1.EZ70MQ Arachis hypogaea HOM05D003152 ORTHO05D004094 3.6e-08 61.2 32 78.1
arahy.Tifrunner.gnm1.ann1.F63DWU Arachis hypogaea HOM05D003152 ORTHO05D031617 3.6e-08 61.2 32 78.1
arahy.Tifrunner.gnm1.ann1.UBEE9G Arachis hypogaea HOM05D003152 ORTHO05D004094 3.6e-08 61.2 32 78.1
Migut.J01479 Erythranthe guttata HOM05D003152 ORTHO05D004094 4.7e-08 60.8 33 78.8
THA.LOC104823549 Tarenaya hassleriana HOM05D003152 ORTHO05D004094 4.7e-08 60.8 33 78.8
AL2G13230 Arabidopsis lyrata HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
AT1G62640 Arabidopsis thaliana HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BcaB07g31342 Brassica carinata HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BcaC04g22425 Brassica carinata HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BcaC04g22757 Brassica carinata HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
A09p13150 Brassica napus HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
A09p16150 Brassica napus HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
C09p15600 Brassica napus HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
C09p19490 Brassica napus HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BolC9t54465H Brassica oleracea HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BolC9t54852H Brassica oleracea HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BraA09t36961Z Brassica rapa HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
BraA09t37250Z Brassica rapa HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
CARHR049250 Cardamine hirsuta HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
Cpa.g.sc29.131 Carica papaya HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
Thhalv10023499m.g Eutrema salsugineum HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
PSO063G1414 Papaver somniferum HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
PSO782G4661 Papaver somniferum HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
Peaxi162Scf03529g00006 Petunia axillaris HOM05D003152 ORTHO05D004094 6.1e-08 60.5 32 81.2
Sp2g02000 Schrenkiella parvula HOM05D003152 ORTHO05D004094 6.1e-08 60.5 33 78.8
Solyc08g006560.3 Solanum lycopersicum HOM05D003152 ORTHO05D004094 6.1e-08 60.5 32 81.2
Glyma.09G277400 Glycine max HOM05D003152 ORTHO05D004094 8.0e-08 60.1 44 61.4
Glyma.18G211400 Glycine max HOM05D003152 ORTHO05D004094 8.0e-08 60.1 44 61.4
Lj3g0024855 Lotus japonicus HOM05D003152 ORTHO05D004094 8.0e-08 60.1 32 75.0
Peaxi162Scf02044g00012 Petunia axillaris HOM05D003152 ORTHO05D004094 8.0e-08 60.1 32 81.2
VMungo1383G1558 Vigna mungo HOM05D003152 ORTHO05D004094 8.0e-08 60.1 44 61.4
CDE09G1199 Ceratophyllum demersum HOM05D003152 ORTHO05D004094 1.0e-07 59.7 32 81.2
CDE11G1032 Ceratophyllum demersum HOM05D003152 ORTHO05D004094 1.0e-07 59.7 32 81.2
Dinv39108 Davidia involucrata HOM05D003152 ORTHO05D004094 1.0e-07 59.7 45 66.7
Sc19g0002810 Simmondsia chinensis HOM05D003152 ORTHO05D004094 1.0e-07 59.7 33 75.8
arahy.Tifrunner.gnm1.ann1.AX7FJG Arachis hypogaea HOM05D003152 ORTHO05D004094 1.4e-07 59.3 32 75.0
arahy.Tifrunner.gnm1.ann1.U0ISBZ Arachis hypogaea HOM05D003152 ORTHO05D004094 1.4e-07 59.3 32 75.0
Carub.0002s0233 Capsella rubella HOM05D003152 ORTHO05D004094 1.4e-07 59.3 33 75.8
CAN.G530.5 Capsicum annuum HOM05D003152 ORTHO05D004094 1.4e-07 59.3 32 84.4
Phvul.008G086600 Phaseolus vulgaris HOM05D003152 ORTHO05D004094 1.4e-07 59.3 44 61.4
Sed0001437 Sechium edule HOM05D003152 ORTHO05D004094 1.4e-07 59.3 33 75.8
THA.LOC104809460 Tarenaya hassleriana HOM05D003152 ORTHO05D004094 1.4e-07 59.3 33 75.8
Atru.chr9.1375 Acer truncatum HOM05D003152 ORTHO05D004094 2.3e-07 58.5 33 75.8
Aa31LG2G230 Aethionema arabicum HOM05D003152 ORTHO05D004094 2.3e-07 58.5 33 75.8
Dinv21605 Davidia involucrata HOM05D003152 ORTHO05D004094 2.3e-07 58.5 33 78.8
PSO170G2789 Papaver somniferum HOM05D003152 ORTHO05D004094 2.3e-07 58.5 33 72.7
Peaxi162Scf00909g00216 Petunia axillaris HOM05D003152 ORTHO05D004094 2.3e-07 58.5 32 78.1
PGR042G2869 Punica granatum HOM05D003152 ORTHO05D004094 2.3e-07 58.5 45 62.2
Glyma.15G003100 Glycine max HOM05D003152 ORTHO05D046704 3.0e-07 58.2 44 59.1
Hma1.2p1_1414F.1_g281900 Hydrangea macrophylla HOM05D003152 ORTHO05D004094 3.0e-07 58.2 33 75.8
Lalb_Chr00c36g0408951 Lupinus albus HOM05D003152 ORTHO05D004094 3.0e-07 58.2 38 68.4
QL12p013407 Quercus lobata HOM05D003152 ORTHO05D004094 3.0e-07 58.2 33 75.8
RcHm_v2.0_Chr7g0202391 Rosa chinensis HOM05D003152 ORTHO05D004094 3.0e-07 58.2 33 75.8
Duzib084G0469 Durio zibethinus HOM05D003152 ORTHO05D004094 4.0e-07 57.8 32 75.0
AUR62011765 Chenopodium quinoa HOM05D003152 ORTHO05D004094 5.2e-07 57.4 33 69.7
AUR62024611 Chenopodium quinoa HOM05D003152 ORTHO05D004094 5.2e-07 57.4 33 69.7
Ca_01015_v3 Cicer arietinum L. HOM05D003152 ORTHO05D004094 5.2e-07 57.4 32 68.8
Lalb_Chr00c36g0408821 Lupinus albus HOM05D003152 ORTHO05D004094 5.2e-07 57.4 32 75.0
Lalb_Chr22g0349441 Lupinus albus HOM05D003152 ORTHO05D004094 5.2e-07 57.4 32 75.0
Lalb_Chr24g0392881 Lupinus albus HOM05D003152 ORTHO05D004094 5.2e-07 57.4 32 75.0
Duzib068G0523 Durio zibethinus HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 75.0
MD08G1135900 Malus domestica HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 78.1
MD09G1022600 Malus domestica HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 78.1
MD12G1033000 Malus domestica HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 78.1
PSO017G6794 Papaver somniferum HOM05D003152 ORTHO05D004094 8.8e-07 56.6 33 69.7
Psat5g306080 Pisum sativum HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 71.9
Thecc.03G256500 Theobroma cacao HOM05D003152 ORTHO05D004094 8.8e-07 56.6 32 75.0
AUR62039936 Chenopodium quinoa HOM05D003152 ORTHO05D004094 1.2e-06 56.2 33 66.7
HanXRQChr17g0550351 Helianthus annuus HOM05D003152 ORTHO05D004094 1.2e-06 56.2 32 75.0
MD04G1085000 Malus domestica HOM05D003152 ORTHO05D004094 1.5e-06 55.8 32 75.0
Peaxi162Scf00133g00016 Petunia axillaris HOM05D003152 ORTHO05D004094 1.5e-06 55.8 32 75.0
TPR.G19173 Trifolium pratense HOM05D003152 ORTHO05D004094 2.6e-06 55.1 32 65.6
Gohir.A09G195600 Gossypium hirsutum HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 68.8
Gohir.D09G190200 Gossypium hirsutum HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 68.8
Gorai.006G212800 Gossypium raimondii HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 68.8
Peaxi162Scf00133g00527 Petunia axillaris HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 75.0
Peaxi162Scf00909g00014 Petunia axillaris HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 71.9
Peaxi162Scf01440g00024 Petunia axillaris HOM05D003152 ORTHO05D004094 4.4e-06 54.3 32 75.0
EL10Ac5g13014 Beta vulgaris HOM05D003152 ORTHO05D004094 5.7e-06 53.9 30 76.7
AUR62007480 Chenopodium quinoa HOM05D003152 ORTHO05D004094 5.7e-06 53.9 40 62.5
COL.COLO4_37209 Corchorus olitorius HOM05D003152 ORTHO05D004094 5.7e-06 53.9 32 68.8
Gorai.007G028000 Gossypium raimondii HOM05D003152 ORTHO05D004094 5.7e-06 53.9 32 75.0
Peaxi162Scf00133g00411 Petunia axillaris HOM05D003152 ORTHO05D020396 5.7e-06 53.9 32 71.9
Medtr4g007180 Medicago truncatula HOM05D003152 ORTHO05D004094 9.7e-06 53.1 32 68.8


User provided reference genes

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