Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 7.7e-67 257.3 158 100.0
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 5.4e-44 181.4 159 71.1
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 7.0e-44 181.0 161 66.5
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 7.0e-44 181.0 160 75.0
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 4.3e-25 118.6 143 63.6
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 5.6e-25 118.2 143 50.3
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 3.6e-24 115.5 142 55.6
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 6.8e-23 111.3 151 49.0
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 8.9e-23 110.9 143 56.6
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 3.4e-22 109.0 165 57.0
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 4.4e-22 108.6 163 45.4
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.5e-22 107.8 150 46.7
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 9.8e-22 107.5 123 56.1
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 9.8e-22 107.5 151 57.6
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.3e-21 107.1 118 61.9
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 2.9e-21 105.9 165 48.5
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.7e-21 105.5 118 55.9
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 4.9e-21 105.1 155 51.6
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 4.9e-21 105.1 150 60.0
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 6.4e-21 104.8 61 70.5
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 1.9e-20 103.2 162 40.1
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 3.2e-20 102.4 155 47.1
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 3.2e-20 102.4 153 56.9
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 5.4e-20 101.7 130 54.6
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 5.4e-20 101.7 141 45.4
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 7.0e-20 101.3 169 49.1
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 9.2e-20 100.9 183 50.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 2.0e-19 99.8 139 50.4
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.0e-19 99.8 114 62.3
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 2.7e-19 99.4 144 47.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 3.5e-19 99.0 116 67.2
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 3.5e-19 99.0 150 34.0
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 3.5e-19 99.0 145 55.2
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 6.0e-19 98.2 153 42.5
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 7.8e-19 97.8 132 58.3
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 1.0e-18 97.4 141 51.1
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 1.3e-18 97.1 144 35.4
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 1.7e-18 96.7 146 51.4
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 2.3e-18 96.3 115 55.7
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 5.0e-18 95.1 121 47.1
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.1e-17 94.0 116 63.8
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 2.5e-17 92.8 139 43.9
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 2.5e-17 92.8 58 56.9
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 3.3e-17 92.4 110 54.5
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 4.3e-17 92.0 142 50.0
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.6e-17 91.7 116 62.9
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 7.3e-17 91.3 170 48.2
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 7.3e-17 91.3 158 51.9
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 9.5e-17 90.9 60 58.3
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 1.2e-16 90.5 172 40.7
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 1.2e-16 90.5 140 47.1
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 1.2e-16 90.5 119 49.6
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.6e-16 90.1 154 46.8
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 6.2e-16 88.2 120 65.8
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.1e-15 87.4 56 60.7
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-15 87.4 132 62.1
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 1.1e-15 87.4 115 45.2
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 1.4e-15 87.0 141 46.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 1.8e-15 86.7 125 60.8
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 1.8e-15 86.7 164 48.8
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.3e-15 86.3 153 52.9
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 3.1e-15 85.9 148 50.7
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 4.0e-15 85.5 109 47.7
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.2e-15 85.1 58 55.2
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 6.8e-15 84.7 53 64.2
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 6.8e-15 84.7 165 42.4
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 8.9e-15 84.3 110 60.0
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 1.2e-14 84.0 55 54.5
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 1.2e-14 84.0 55 54.5
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 1.2e-14 84.0 55 54.5
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.2e-14 84.0 110 62.7
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 1.2e-14 84.0 131 53.4
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 1.2e-14 84.0 168 50.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.2e-14 84.0 156 42.9
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 2.0e-14 83.2 113 56.6
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 2.0e-14 83.2 58 51.7
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 2.0e-14 83.2 58 51.7
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 2.0e-14 83.2 58 51.7
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 2.0e-14 83.2 58 51.7
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.0e-14 83.2 116 57.8
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 2.6e-14 82.8 55 54.5
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 2.6e-14 82.8 55 54.5
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.6e-14 82.8 116 57.8
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 2.6e-14 82.8 116 57.8
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 2.6e-14 82.8 116 57.8
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.6e-14 82.8 145 49.0
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 3.4e-14 82.4 55 56.4
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 3.4e-14 82.4 54 53.7
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 55 52.7
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 4.4e-14 82.0 55 54.5
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 4.4e-14 82.0 55 52.7
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 4.4e-14 82.0 55 52.7
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 4.4e-14 82.0 55 52.7
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.4e-14 82.0 55 54.5
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.4e-14 82.0 55 52.7
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.4e-14 82.0 143 39.2
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 4.4e-14 82.0 149 55.0
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 5.8e-14 81.6 49 63.3
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 1.3e-13 80.5 112 56.2
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-13 80.5 113 43.4
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-13 80.5 113 43.4
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.3e-13 80.5 111 42.3
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 1.7e-13 80.1 144 53.5
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.2e-13 79.7 131 57.3
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 2.2e-13 79.7 117 49.6
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 2.2e-13 79.7 144 34.0
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 2.9e-13 79.3 112 63.4
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 2.9e-13 79.3 109 40.4
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 3.7e-13 79.0 142 35.2
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.9e-13 78.6 132 55.3
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 4.9e-13 78.6 139 38.8
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 8.3e-13 77.8 114 60.5
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 1.1e-12 77.4 164 45.7
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 1.1e-12 77.4 53 56.6
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 1.9e-12 76.6 114 60.5
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 1.9e-12 76.6 54 55.6
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 3.2e-12 75.9 54 55.6
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 3.2e-12 75.9 49 61.2
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 3.2e-12 75.9 120 47.5
ATR0626G310 Amborella trichopoda HOM05D005179 ORTHO05D006225 4.1e-12 75.5 145 46.9
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.1e-12 75.5 142 46.5
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 4.1e-12 75.5 58 48.3
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.4e-12 75.1 58 55.2
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.4e-12 75.1 122 52.5
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 5.4e-12 75.1 49 61.2
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 7.1e-12 74.7 51 54.9
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 9.2e-12 74.3 58 53.4
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 1.6e-11 73.6 51 52.9
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-11 73.6 51 52.9
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.6e-11 73.6 54 51.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 1.6e-11 73.6 55 49.1
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 2.1e-11 73.2 56 48.2
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.1e-11 73.2 51 52.9
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.1e-11 73.2 51 52.9
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 2.7e-11 72.8 177 35.6
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 3.5e-11 72.4 58 53.4
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.5e-11 72.4 52 50.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 3.5e-11 72.4 52 50.0
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 7.8e-11 71.2 151 43.0
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 1.0e-10 70.9 48 50.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.7e-10 70.1 48 52.1
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 2.3e-10 69.7 51 47.1
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 2.3e-10 69.7 51 47.1
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 3.0e-10 69.3 54 50.0
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 5.1e-10 68.6 49 53.1
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 6.6e-10 68.2 47 51.1
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 1.1e-09 67.4 53 47.2
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 2.5e-09 66.2 57 43.9
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 4.3e-09 65.5 47 48.9
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 7.3e-09 64.7 53 45.3
vmacro14931 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 1.1e-07 60.8 107 41.1
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 1.4e-07 60.5 135 34.8
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 1.8e-07 60.1 42 52.4


User provided reference genes

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