Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 1.2e-82 309.7 147 100.0
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 8.7e-73 276.9 141 94.3
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 1.5e-69 266.2 141 90.8
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.8e-68 261.5 141 88.7
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 8.4e-68 260.4 141 89.4
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 8.4e-68 260.4 141 89.4
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 2.1e-66 255.8 141 88.7
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 3.5e-66 255.0 141 85.8
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 1.3e-55 219.9 139 71.2
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.7e-55 219.5 141 70.2
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 4.8e-55 218.0 142 70.4
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.1e-54 216.9 141 69.5
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 1.4e-54 216.5 135 73.3
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 1.8e-54 216.1 142 69.7
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 1.8e-54 216.1 142 69.0
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 1.2e-53 213.4 143 68.5
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 1.5e-53 213.0 137 70.1
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 5.9e-53 211.1 135 72.6
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 5.9e-53 211.1 137 70.1
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 2.2e-52 209.1 141 68.8
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 2.9e-52 208.8 136 68.4
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 2.9e-52 208.8 136 68.4
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 2.9e-52 208.8 136 68.4
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 2.9e-52 208.8 136 70.6
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 1.1e-51 206.8 137 67.2
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 2.5e-51 205.7 146 65.8
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 4.2e-51 204.9 142 66.2
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 3.6e-50 201.8 138 66.7
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 4.7e-50 201.4 142 66.9
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 7.9e-50 200.7 145 66.2
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.8e-49 199.5 140 67.1
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 5.1e-49 198.0 137 63.5
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 6.7e-49 197.6 138 64.5
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 1.5e-48 196.4 138 68.1
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.0e-48 196.1 138 65.9
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 2.6e-48 195.7 138 65.9
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 3.3e-48 195.3 144 66.0
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 3.3e-48 195.3 141 63.8
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 3.3e-48 195.3 152 61.8
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 4.4e-48 194.9 142 65.5
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 4.4e-48 194.9 141 63.8
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 9.7e-48 193.7 141 64.5
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.3e-47 193.4 144 66.0
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 1.7e-47 193.0 143 62.2
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.7e-47 193.0 147 64.6
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 2.2e-47 192.6 141 63.8
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 2.8e-47 192.2 142 64.8
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 4.8e-47 191.4 140 63.6
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 4.8e-47 191.4 137 66.4
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 6.3e-47 191.0 141 62.4
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 6.3e-47 191.0 138 65.9
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 1.1e-46 190.3 139 64.7
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 1.4e-46 189.9 140 66.4
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.4e-46 189.9 141 61.7
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 1.4e-46 189.9 141 61.7
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 1.8e-46 189.5 137 62.8
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 2.4e-46 189.1 133 65.4
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 4.1e-46 188.3 137 65.0
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 4.1e-46 188.3 141 61.7
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 5.3e-46 188.0 144 61.8
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 5.3e-46 188.0 138 62.3
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 9.1e-46 187.2 147 61.2
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 9.1e-46 187.2 141 65.2
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.5e-45 186.4 140 64.3
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.6e-45 185.7 141 61.7
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 3.4e-45 185.3 141 65.2
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.4e-45 185.3 141 64.5
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 3.4e-45 185.3 141 63.8
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 7.7e-45 184.1 141 63.1
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 5.0e-44 181.4 142 57.7
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 1.1e-43 180.3 143 58.0
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 1.9e-43 179.5 142 58.5
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 1.2e-42 176.8 142 55.6
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 1.6e-42 176.4 142 55.6
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 1.6e-42 176.4 142 55.6
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.6e-42 176.4 142 55.6
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 1.6e-42 176.4 142 55.6
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 2.7e-42 175.6 142 56.3
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 3.6e-42 175.3 142 59.2
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 4.7e-42 174.9 143 60.1
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 6.1e-42 174.5 135 62.2
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 6.1e-42 174.5 135 60.7
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 8.0e-42 174.1 142 54.9
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.0e-41 173.7 132 58.3
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.0e-41 173.7 132 58.3
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 1.4e-41 173.3 141 55.3
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 1.4e-41 173.3 142 55.6
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 3.0e-41 172.2 142 54.9
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 3.0e-41 172.2 142 54.9
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 3.0e-41 172.2 142 54.9
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 3.0e-41 172.2 146 56.8
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 5.2e-41 171.4 137 61.3
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 6.7e-41 171.0 142 55.6
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 6.7e-41 171.0 131 60.3
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 8.8e-41 170.6 143 59.4
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 8.8e-41 170.6 142 52.8
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.5e-40 169.9 144 55.6
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 1.5e-40 169.9 165 51.5
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 7.4e-40 167.5 142 53.5
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 9.7e-40 167.2 142 54.2
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 1.7e-39 166.4 147 55.8
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 2.2e-39 166.0 136 60.3
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.2e-39 166.0 135 59.3
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 6.3e-39 164.5 135 60.0
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 1.4e-38 163.3 135 55.6
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 4.1e-38 161.8 143 52.4
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 5.3e-38 161.4 141 54.6
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 2.0e-37 159.5 143 52.4
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 2.0e-37 159.5 143 53.8
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 3.5e-37 158.7 145 52.4
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 3.5e-37 158.7 145 52.4
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 5.9e-37 157.9 142 54.9
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 5.9e-37 157.9 134 54.5
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.7e-36 156.4 135 54.1
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 5.0e-36 154.8 144 52.1
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 6.5e-36 154.5 144 54.2
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 8.5e-36 154.1 146 55.5
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 8.5e-36 154.1 132 54.5
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 3.2e-35 152.1 144 51.4
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 4.2e-35 151.8 143 51.7
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 7.2e-35 151.0 95 68.4
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 4.7e-34 148.3 149 51.7
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 5.2e-33 144.8 141 53.2
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 3.3e-32 142.1 135 51.9
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.1e-30 137.1 89 69.7
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.8e-30 136.3 143 50.3
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 2.0e-29 132.9 263 32.7
CAN.G266.1 Capsicum annuum HOM05D004681 ORTHO05D005541 5.5e-27 124.8 88 70.5
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.6e-26 122.1 133 51.1
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 3.4e-24 115.5 138 41.3
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 1.3e-23 113.6 137 44.5
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 2.2e-23 112.8 141 39.7
Pp3c4_10660 Physcomitrium patens HOM05D004681 ORTHO05D005541 9.1e-22 107.5 142 38.7
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 2.0e-21 106.3 81 59.3
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 3.5e-21 105.5 142 41.5
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 1.8e-17 93.2 126 36.5
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 4.4e-16 88.6 142 35.2
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 4.9e-15 85.1 100 46.0
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 3.5e-13 79.0 40 85.0
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 2.3e-12 76.3 41 73.2
CBR_g39348 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-11 73.2 142 32.4
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 6.1e-10 68.2 44 68.2
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 8.0e-10 67.8 41 70.7
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.3e-09 66.2 41 70.7
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 1.5e-08 63.5 135 34.8
MELO3C029108.2 Cucumis melo HOM05D004681 ORTHO05D005541 2.0e-08 63.2 46 60.9


User provided reference genes

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