Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 5.7e-92 340.9 170 100.0
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 2.5e-47 192.6 265 45.7
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 9.5e-39 164.1 265 41.5
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 6.2e-38 161.4 265 41.1
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 3.1e-37 159.1 265 40.8
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 3.4e-36 155.6 89 85.4
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.7e-32 143.3 259 39.8
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 3.0e-32 142.5 145 57.9
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 2.5e-31 139.4 258 38.4
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 1.2e-30 137.1 81 85.2
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 3.6e-30 135.6 266 36.8
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 4.4e-28 128.6 81 79.0
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 5.2e-21 105.1 262 32.4
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 7.6e-20 101.3 261 31.0
CAN.G1417.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.1e-18 97.4 162 40.7
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 1.9e-18 96.7 144 45.8
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 3.2e-18 95.9 261 30.3
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 9.3e-18 94.4 213 32.9
CAN.G1129.41 Capsicum annuum HOM05D003900 ORTHO05D005009 1.2e-17 94.0 149 45.6
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 1.6e-17 93.6 258 30.2
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 2.1e-17 93.2 263 30.4
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 4.6e-17 92.0 263 30.4
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.0e-16 89.4 252 29.4
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 1.1e-15 87.4 291 27.5
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.9e-15 86.7 254 27.2
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 1.9e-15 86.7 254 27.2
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 5.6e-15 85.1 258 28.3
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.8e-14 82.8 256 27.0
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 3.6e-14 82.4 265 28.7
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 3.6e-14 82.4 254 28.7
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.8e-14 82.0 252 28.2
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 8.1e-14 81.3 260 29.6
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 1.1e-13 80.9 267 25.8
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.4e-13 79.7 256 27.3
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.0e-13 79.0 251 28.3
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 9.0e-13 77.8 267 26.2
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.6e-12 76.3 251 27.5
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 3.4e-12 75.9 255 25.9
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 4.5e-12 75.5 255 27.5
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 5.8e-12 75.1 281 25.6
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.8e-12 75.1 257 27.6
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 9.9e-12 74.3 54 64.8
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 1.7e-11 73.6 43 79.1
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 2.9e-11 72.8 150 34.0
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 3.8e-11 72.4 141 34.8
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 3.8e-11 72.4 268 26.5
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 3.8e-11 72.4 253 25.7
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 4.9e-11 72.0 268 26.1
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 1.4e-10 70.5 268 25.4
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 1.4e-10 70.5 251 27.1
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 2.4e-10 69.7 256 25.4
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 2.4e-10 69.7 240 24.2
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 2.4e-10 69.7 263 25.5
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 3.2e-10 69.3 269 23.8
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 4.2e-10 68.9 79 49.4
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 4.2e-10 68.9 152 34.2
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 4.2e-10 68.9 52 55.8
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 5.4e-10 68.6 250 25.6
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 5.4e-10 68.6 54 59.3
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 9.3e-10 67.8 254 24.8
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 1.2e-09 67.4 45 66.7
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.6e-09 67.0 49 57.1
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.6e-09 67.0 171 32.2
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.6e-09 67.0 124 37.1
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 2.1e-09 66.6 157 29.9
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 2.1e-09 66.6 52 65.4
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 2.1e-09 66.6 49 61.2
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 2.7e-09 66.2 50 62.0
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 2.7e-09 66.2 153 32.7
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 3.5e-09 65.9 53 50.9
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 3.5e-09 65.9 53 52.8
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 4.6e-09 65.5 55 58.2
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 7.9e-09 64.7 257 24.5
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.0e-08 64.3 41 73.2
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.0e-08 64.3 53 58.5
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.0e-08 64.3 53 60.4
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.3e-08 63.9 56 58.9
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.3e-08 63.9 56 58.9
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 1.3e-08 63.9 45 62.2
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.8e-08 63.5 45 60.0
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 2.3e-08 63.2 49 61.2
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 2.3e-08 63.2 79 46.8
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 2.3e-08 63.2 79 46.8
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 2.3e-08 63.2 54 55.6
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 2.3e-08 63.2 53 50.9
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 3.9e-08 62.4 56 57.1
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 5.1e-08 62.0 56 55.4
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 5.1e-08 62.0 56 55.4
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 5.1e-08 62.0 56 53.6
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 5.1e-08 62.0 53 58.5
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 6.7e-08 61.6 120 35.8
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 6.7e-08 61.6 56 55.4
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 6.7e-08 61.6 142 33.1
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 8.7e-08 61.2 150 31.3
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 1.1e-07 60.8 38 71.1
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 1.1e-07 60.8 208 27.4
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.5e-07 60.5 56 53.6
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.5e-07 60.5 43 67.4
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 1.5e-07 60.5 124 33.9
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.5e-07 60.5 75 45.3
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.9e-07 60.1 57 52.6
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 2.5e-07 59.7 163 29.4
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 2.5e-07 59.7 56 55.4
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.5e-07 59.7 43 58.1
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 2.5e-07 59.7 45 57.8
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 5.6e-07 58.5 129 34.9
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 5.6e-07 58.5 129 34.1
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 5.6e-07 58.5 52 55.8
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 7.4e-07 58.2 75 41.3
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 7.4e-07 58.2 45 57.8
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 9.6e-07 57.8 129 34.1
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 1.3e-06 57.4 45 57.8
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-06 57.0 54 48.1
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.6e-06 57.0 75 42.7
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-06 56.2 45 55.6
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.8e-06 56.2 45 53.3
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 4.8e-06 55.5 103 34.0
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 4.8e-06 55.5 46 54.3
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 8.1e-06 54.7 45 51.1


User provided reference genes

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