Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G606.79 Capsicum annuum HOM05D002370 ORTHO05D020284 6.2e-126 454.1 229 100.0
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 2.2e-75 286.2 205 76.6
CAN.G1627.3 Capsicum annuum HOM05D002370 ORTHO05D003878 2.9e-75 285.8 240 68.8
CAN.G1164.4 Capsicum annuum HOM05D002370 ORTHO05D003878 8.5e-75 284.3 212 74.1
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 8.5e-75 284.3 205 76.1
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 8.5e-75 284.3 205 76.1
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 9.4e-74 280.8 205 74.6
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.4e-71 271.9 205 73.2
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 4.4e-71 271.9 205 73.2
CAN.G289.59 Capsicum annuum HOM05D002370 ORTHO05D003878 2.0e-68 263.1 205 73.2
CAN.G1164.1 Capsicum annuum HOM05D002370 ORTHO05D003878 8.0e-65 251.1 205 70.7
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 3.0e-64 249.2 207 66.7
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 2.0e-63 246.5 208 64.4
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 2.2e-62 243.0 207 64.3
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 3.1e-61 239.2 207 62.8
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 9.1e-61 237.7 207 63.8
Cc02_g20170 Coffea canephora HOM05D002370 ORTHO05D003878 1.2e-60 237.3 207 61.4
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 5.9e-60 235.0 207 63.3
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 1.0e-59 234.2 207 61.4
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.3e-59 233.8 207 61.4
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.9e-59 232.6 207 59.9
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.8e-59 232.3 206 60.2
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 5.0e-59 231.9 208 63.9
Cpa.g.sc106.24 Carica papaya HOM05D002370 ORTHO05D003878 8.5e-59 231.1 208 60.6
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 8.5e-59 231.1 207 59.9
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.1e-58 230.7 208 63.0
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.1e-58 230.7 207 61.8
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 2.5e-58 229.6 207 62.8
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 3.2e-58 229.2 205 59.5
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 3.2e-58 229.2 205 59.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 3.2e-58 229.2 205 60.0
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 3.2e-58 229.2 205 60.0
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 4.2e-58 228.8 208 62.0
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 5.5e-58 228.4 205 59.0
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 9.4e-58 227.6 208 60.1
CAN.G1627.7 Capsicum annuum HOM05D002370 ORTHO05D003878 1.2e-57 227.3 175 74.3
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 1.6e-57 226.9 190 63.2
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 2.1e-57 226.5 212 59.4
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 2.7e-57 226.1 208 60.6
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 2.7e-57 226.1 206 60.2
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.7e-57 226.1 212 59.4
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 2.7e-57 226.1 205 62.0
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 3.6e-57 225.7 205 61.5
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 3.6e-57 225.7 208 59.1
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 3.6e-57 225.7 208 60.1
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 3.6e-57 225.7 208 58.2
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 3.6e-57 225.7 208 58.2
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 8.0e-57 224.6 208 59.1
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.4e-56 223.8 209 59.3
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.8e-56 223.4 208 59.6
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.8e-56 223.4 208 59.6
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 1.8e-56 223.4 208 59.1
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 3.0e-56 222.6 208 60.6
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 3.0e-56 222.6 209 58.9
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 3.0e-56 222.6 208 59.6
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 4.0e-56 222.2 208 58.7
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 4.0e-56 222.2 208 59.1
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.0e-56 222.2 208 60.1
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 4.0e-56 222.2 205 61.0
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 5.2e-56 221.9 208 60.6
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 5.2e-56 221.9 201 59.7
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 6.8e-56 221.5 209 58.9
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 6.8e-56 221.5 207 60.4
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 6.8e-56 221.5 204 58.8
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 8.8e-56 221.1 206 58.7
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 2.0e-55 219.9 206 57.8
QL11p028985 Quercus lobata HOM05D002370 ORTHO05D003878 2.6e-55 219.5 187 61.5
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 3.4e-55 219.2 209 58.4
TAR625G0605 Trochodendron aralioides HOM05D002370 ORTHO05D003878 3.4e-55 219.2 207 58.0
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 4.4e-55 218.8 208 57.2
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 5.7e-55 218.4 204 55.4
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 5.7e-55 218.4 208 57.7
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 1.3e-54 217.2 206 58.7
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 1.7e-54 216.9 208 57.7
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 2.2e-54 216.5 206 57.3
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 2.2e-54 216.5 207 58.0
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 2.2e-54 216.5 207 58.0
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 2.8e-54 216.1 208 58.7
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 2.8e-54 216.1 185 62.7
Haze_10321 Corylus avellana HOM05D002370 ORTHO05D003878 1.4e-53 213.8 214 55.1
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 2.4e-53 213.0 185 61.6
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 2.4e-53 213.0 185 61.1
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 3.1e-53 212.6 208 55.3
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 4.1e-53 212.2 194 59.3
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 9.1e-53 211.1 194 58.2
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 9.1e-53 211.1 205 56.1
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 3.5e-52 209.1 208 55.3
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 4.5e-52 208.8 204 54.9
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 5.9e-52 208.4 208 56.2
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 5.9e-52 208.4 208 56.2
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 7.7e-52 208.0 208 55.3
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 7.7e-52 208.0 205 54.6
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 1.3e-51 207.2 205 57.1
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 1.3e-51 207.2 209 55.5
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-51 207.2 209 56.5
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 1.7e-51 206.8 208 55.3
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 2.9e-51 206.1 208 54.8
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 6.6e-51 204.9 205 53.7
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 6.6e-51 204.9 204 52.9
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 8.6e-51 204.5 205 54.1
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 1.9e-50 203.4 205 53.7
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.5e-50 203.0 216 53.2
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 3.3e-50 202.6 185 58.9
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 7.2e-50 201.4 207 52.7
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 7.2e-50 201.4 207 53.6
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 7.2e-50 201.4 207 53.6
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 1.6e-49 200.3 207 53.6
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.6e-49 200.3 207 53.6
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 6.1e-49 198.4 208 53.4
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 1.0e-48 197.6 208 54.3
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 3.0e-48 196.1 208 52.4
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 6.8e-48 194.9 208 51.9
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 8.9e-48 194.5 208 51.0
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 8.9e-48 194.5 208 51.0
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 5.7e-47 191.8 206 51.0
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 3.7e-46 189.1 208 50.0
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.2e-45 186.0 168 61.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 1.0e-43 181.0 358 38.3
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.7e-43 180.3 170 60.0
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 2.3e-43 179.9 178 56.2
Ah.01g024560 Amaranthus hybridus HOM05D002370 ORTHO05D003878 1.5e-42 177.2 168 57.7
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 1.2e-41 174.1 170 57.6
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.2e-41 174.1 203 50.2
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 2.3e-40 169.9 172 54.7
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 6.8e-40 168.3 172 54.1
CAN.G10698.1 Capsicum annuum HOM05D002370 ORTHO05D003878 1.7e-38 163.7 86 96.5
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 3.7e-38 162.5 210 49.5
Gohir.A01G009566 Gossypium hirsutum HOM05D002370 ORTHO05D003878 1.4e-37 160.6 142 62.0
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 9.5e-34 147.9 185 47.0
CAN.G411.107 Capsicum annuum HOM05D002370 ORTHO05D003878 1.6e-33 147.1 143 55.9
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 4.7e-33 145.6 168 48.2
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 1.7e-30 137.1 148 52.0
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 2.2e-30 136.7 185 47.6
FAN20G0378 Fragaria x ananassa HOM05D002370 ORTHO05D020284 2.1e-28 130.2 173 45.1
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 2.3e-27 126.7 154 48.1
Atru.chr5.2257 Acer truncatum HOM05D002370 ORTHO05D003878 4.9e-22 109.0 70 80.0
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 3.2e-21 106.3 182 36.8
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 4.1e-21 105.9 231 32.9
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 7.8e-20 101.7 54 90.7
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 5.1e-19 99.0 190 36.8
CDE04G3197 Ceratophyllum demersum HOM05D002370 ORTHO05D020284 2.1e-12 77.0 43 86.0
Cfa026368 Carpinus fangiana HOM05D002370 ORTHO05D003878 7.8e-12 75.1 94 40.4
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 3.0e-11 73.2 187 31.0
Haze_26242 Corylus avellana HOM05D002370 ORTHO05D003878 1.6e-09 67.4 138 30.4
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 6.2e-09 65.5 33 93.9
FvH4_2g06710 Fragaria vesca HOM05D002370 ORTHO05D020284 1.4e-08 64.3 51 64.7
CAN.G1164.5 Capsicum annuum HOM05D009846 ORTHO05D002175 1.8e-08 63.9 42 73.8
FAN24G2034 Fragaria x ananassa HOM05D002370 ORTHO05D020284 9.0e-08 61.6 38 78.9
Lalb_Chr16g0376331 Lupinus albus HOM05D002370 ORTHO05D020284 9.0e-08 61.6 29 96.6


User provided reference genes

Program Settings