Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 0.0e+00 1615.1 935 100.0
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 5.2e-296 1021.1 957 69.7
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 6.8e-296 1020.8 956 69.8
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 3.6e-273 945.3 908 68.2
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 8.1e-265 917.5 975 64.0
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.2e-263 913.7 904 67.6
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 8.3e-185 651.7 868 55.8
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 7.3e-165 585.5 963 47.0
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 8.9e-163 578.6 1033 44.1
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.2e-159 568.2 996 46.1
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 4.3e-157 559.7 1014 46.5
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 4.3e-157 559.7 983 45.7
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 5.6e-149 532.7 1016 46.1
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 2.4e-147 527.3 946 45.3
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.4e-147 527.3 1021 41.0
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.7e-145 521.2 937 44.5
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 1.9e-144 517.7 937 44.4
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 3.5e-143 513.5 973 44.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 3.1e-139 500.4 965 39.9
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 1.5e-138 498.0 943 43.4
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 2.0e-138 497.7 985 43.1
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 5.1e-134 483.0 904 42.8
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 9.6e-133 478.8 975 40.0
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 3.1e-131 473.8 961 40.3
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 5.8e-130 469.5 959 41.9
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 7.6e-130 469.2 965 40.1
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 3.8e-129 466.8 1029 36.4
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 3.2e-128 463.8 1005 40.3
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 7.1e-128 462.6 961 42.1
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.2e-127 461.8 916 39.7
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 3.9e-126 456.8 945 39.6
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 1.6e-124 451.4 1096 38.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 2.1e-124 451.1 1025 39.5
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 1.8e-123 448.0 981 38.7
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.4e-122 443.7 1005 39.8
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 2.5e-120 437.6 945 38.4
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.3e-118 431.8 962 38.7
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 4.3e-117 426.8 589 48.9
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 1.1e-115 422.2 493 53.5
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.8e-115 421.4 973 39.7
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 2.4e-115 421.0 950 39.8
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 5.3e-115 419.9 984 41.7
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 5.3e-115 419.9 626 45.8
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.7e-113 414.8 750 41.5
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.4e-113 412.5 965 39.4
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 7.2e-112 409.5 971 40.2
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 9.3e-112 409.1 971 38.4
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.2e-111 408.7 414 57.2
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 2.7e-111 407.5 969 38.3
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 6.1e-111 406.4 483 54.7
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.3e-110 405.2 947 38.9
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.5e-109 401.7 934 36.7
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 9.7e-109 399.1 965 40.5
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 8.2e-108 396.0 504 49.6
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.4e-107 394.4 531 47.8
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 2.0e-106 391.3 938 38.2
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 4.5e-106 390.2 470 53.0
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.3e-105 388.7 918 39.1
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 2.2e-105 387.9 898 38.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 3.8e-105 387.1 436 54.1
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.9e-104 384.8 444 52.3
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 4.2e-104 383.6 970 38.4
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 2.7e-103 380.9 976 38.4
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 3.6e-103 380.6 844 39.8
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 7.9e-103 379.4 461 51.6
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 7.9e-103 379.4 582 46.6
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.4e-102 378.6 445 51.7
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 2.3e-102 377.9 509 49.7
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.0e-102 377.5 441 50.8
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.9e-102 377.1 582 48.1
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 9.7e-101 372.5 429 50.6
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 2.8e-100 370.9 901 40.0
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 2.4e-99 367.9 521 47.8
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 3.1e-99 367.5 891 39.4
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 4.5e-98 363.6 576 44.8
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 5.9e-98 363.2 438 48.6
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 3.8e-97 360.5 449 48.6
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 3.8e-97 360.5 362 56.4
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 8.5e-97 359.4 458 49.6
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 9.4e-96 355.9 431 53.1
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 2.7e-95 354.4 432 49.3
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 3.0e-94 350.9 974 36.0
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 3.3e-93 347.4 1009 35.0
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 5.7e-93 346.7 420 49.5
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 1.8e-91 341.7 998 35.0
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 3.1e-91 340.9 432 47.9
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 2.0e-90 338.2 431 48.0
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 4.5e-90 337.0 369 52.8
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 1.4e-86 325.5 432 46.3
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.4e-83 315.5 409 49.1
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 2.7e-79 301.2 927 37.0
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 2.6e-77 294.7 530 41.3
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 5.9e-74 283.5 566 39.0
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 1.6e-66 258.8 936 34.1
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 2.0e-66 258.5 829 34.0
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 9.8e-53 213.0 344 39.5
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 9.8e-53 213.0 344 39.5
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 6.6e-49 200.3 329 43.5
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.6e-42 179.1 973 26.8
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 6.2e-39 167.2 149 59.7
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 1.7e-33 149.1 318 37.1
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 5.1e-33 147.5 764 27.6
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 6.6e-33 147.1 314 38.9
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 2.1e-26 125.6 133 51.1
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.2e-21 109.8 84 65.5
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 1.2e-21 109.8 188 51.1
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 2.0e-21 109.0 147 47.6
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 5.8e-21 107.5 672 30.7
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 1.6e-18 99.4 275 31.3
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 4.6e-18 97.8 83 62.7
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 6.0e-18 97.4 364 33.0
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 8.7e-17 93.6 295 38.3
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 2.1e-15 89.0 94 55.3
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 5.3e-14 84.3 177 42.4
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 4.9e-12 77.8 140 42.1
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 1.0e-09 70.1 53 73.6
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 8.7e-09 67.0 299 39.1
Glyma.10G258901 Glycine max HOM05D006481 ORTHO05D008160 1.5e-08 66.2 73 47.9
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 4.3e-08 64.7 114 40.4
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 3.7e-07 61.6 43 62.8


User provided reference genes

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